Secondary structure and disorder prediction

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Sequence		M	K	N	I	V	P	D	Y	R	L	D	M	V	G	E	P	C	P	Y	P	A	V	A	T	L	E	A	M	P	Q	L	K	K	G	E	I	L	E	V	V	S	D	C	P	Q	S	I	N	N	I	P	L	D	A	R	N	H	G	Y	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Sequence		V	L	D	I	Q	Q	D	G	P	T	I	R	Y	L	I	Q	K
Secondary structure
SS confidence
Disorder																		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1je3 chain A Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 100% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1dcj chain A Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 30% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1jdq chain A Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 39% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1pav chain A Region: 3 - 77 Aligned: 75 Modelled: 75 Confidence: 99.8% Identity: 23% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 3hz7 chain A Region: 8 - 77 Aligned: 70 Modelled: 70 Confidence: 99.8% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a Phyre2 PDB 1yg0 chain A Region: 8 - 62 Aligned: 55 Modelled: 55 Confidence: 92.8% Identity: 13% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1cc8 chain A Region: 5 - 66 Aligned: 59 Modelled: 61 Confidence: 92.1% Identity: 17% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1y3k chain A Region: 8 - 69 Aligned: 62 Modelled: 62 Confidence: 89.9% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 2l3m chain A Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 89.3% Identity: 20% PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames Phyre2 PDB 1p6t chain A domain 1 Region: 7 - 62 Aligned: 56 Modelled: 56 Confidence: 88.9% Identity: 18% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2qif chain A domain 1 Region: 5 - 61 Aligned: 57 Modelled: 57 Confidence: 88.5% Identity: 21% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2kt2 chain A Region: 9 - 62 Aligned: 54 Modelled: 54 Confidence: 86.6% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase Phyre2 PDB 1kvj chain A Region: 5 - 67 Aligned: 63 Modelled: 63 Confidence: 86.1% Identity: 11% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ldi chain A Region: 4 - 61 Aligned: 58 Modelled: 58 Confidence: 85.8% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant Phyre2 PDB 2ofh chain X Region: 4 - 62 Aligned: 59 Modelled: 59 Confidence: 85.2% Identity: 20% PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form Phyre2 PDB 2aw0 chain A Region: 4 - 62 Aligned: 59 Modelled: 59 Confidence: 85.2% Identity: 12% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1p6t chain A domain 2 Region: 8 - 69 Aligned: 62 Modelled: 62 Confidence: 84.9% Identity: 11% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ggp chain B domain 1 Region: 7 - 67 Aligned: 61 Modelled: 61 Confidence: 84.4% Identity: 16% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2gcf chain A Region: 7 - 67 Aligned: 61 Modelled: 61 Confidence: 83.2% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form Phyre2 PDB 1q8l chain A Region: 7 - 69 Aligned: 63 Modelled: 63 Confidence: 82.5% Identity: 13% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 1 d1je3a_ 2 d1dcja_ 3 d1jdqa_ 4 d1pava_ 5 c3hz7A_ 6 c1yg0A_ 7 d1cc8a_ 8 c1y3kA_ 9 c2l3mA_ 10 d1p6ta1 11 d2qifa1 12 c2kt2A_ 13 d1kvja_ 14 c2ldiA_ 15 c2ofhX_ 16 d2aw0a_ 17 d1p6ta2 18 d2ggpb1 19 c2gcfA_ 20 d1q8la_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1je3a_ 99.9 100 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 2 d1dcja_ 99.9 30 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 3 d1jdqa_ 99.9 39 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 4 d1pava_ 99.8 23 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 5 c3hz7A_ 99.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 6 c1yg0A_ 92.8 13 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 7 d1cc8a_ 92.1 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 8 c1y3kA_ 89.9 11 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 9 c2l3mA_ 89.3 20 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 10 d1p6ta1 88.9 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 11 d2qifa1 88.5 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 12 c2kt2A_ 86.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 13 d1kvja_ 86.1 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 14 c2ldiA_ 85.8 24 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 15 c2ofhX_ 85.2 20 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 16 d2aw0a_ 85.2 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 17 d1p6ta2 84.9 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 18 d2ggpb1 84.4 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 19 c2gcfA_ 83.2 16 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 20 d1q8la_ 82.5 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 21 d1mwza_ not modelled 82.3 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 22 c3dxsX_ not modelled 82.2 13 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 23 d1s6ua_ not modelled 80.9 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 24 d2d9ia1 not modelled 77.6 11 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 25 c1yjrA_ not modelled 76.2 10 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 26 c3qwuA_ not modelled 75.7 10 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 27 d1cpza_ not modelled 74.8 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 28 c2kyzA_ not modelled 74.5 16 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 29 c3grzA_ not modelled 73.4 10 PDB header:transferase Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus 30 c2kkhA_ not modelled 72.6 10 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 31 d1osda_ not modelled 71.4 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 32 d1afia_ not modelled 70.7 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 33 d1sb6a_ not modelled 68.4 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 c2k2pA_ not modelled 67.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 35 c2vkcA_ not modelled 67.1 12 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 36 d2nxca1 not modelled 64.1 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ribosomal protein L11 methyltransferase PrmA 37 c3nf5A_ not modelled 58.9 3 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup116; PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup116 from candida glabrata 38 c2aivA_ not modelled 58.0 11 PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p 39 c1ko6A_ not modelled 53.6 7 PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98 40 c2zqeA_ not modelled 52.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 41 c3fryB_ not modelled 51.4 16 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 42 c2q5xA_ not modelled 50.8 7 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of the c-terminal domain of hnup98 43 c3kepA_ not modelled 49.2 6 PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae 44 c2rogA_ not modelled 44.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 45 c2ga7A_ not modelled 43.6 9 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 46 d1fe0a_ not modelled 42.0 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 47 c2rmlA_ not modelled 38.9 14 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 48 d2cc0a1 not modelled 32.6 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 49 c2kngA_ not modelled 31.5 26 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 50 d1dusa_ not modelled 30.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein MJ0882 51 d1qupa2 not modelled 28.1 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 52 c3iz6A_ not modelled 28.0 12 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 53 c2ropA_ not modelled 27.6 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 54 c3qd7X_ not modelled 27.3 11 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 55 d1ny1a_ not modelled 25.5 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 56 c3dlcA_ not modelled 22.5 13 PDB header:transferase Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution 57 d2c1ia1 not modelled 20.8 24 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 58 d2obba1 not modelled 20.7 14 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 59 c3fpnB_ not modelled 19.2 15 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 60 c3ntaA_ not modelled 19.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase 61 d1h8ca_ not modelled 18.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 62 c3evzA_ not modelled 17.7 27 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus 63 d1l3ia_ not modelled 17.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Precorrin-6Y methyltransferase (CbiT) 64 d1jvaa3 not modelled 17.5 11 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 65 d1wj4a_ not modelled 17.3 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 66 c2vyoA_ not modelled 16.6 11 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 67 c2eseA_ not modelled 16.2 22 PDB header:protein/rna complex Chain: A: PDB Molecule:vts1p; PDBTitle: structure of the sam domain of vts1p in complex with rna 68 c2aj1A_ not modelled 16.1 11 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 69 d2naca2 not modelled 15.5 10 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 70 c3lteH_ not modelled 14.9 20 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 71 d2j13a1 not modelled 14.2 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 72 c2b6gA_ not modelled 14.1 22 PDB header:rna binding protein Chain: A: PDB Molecule:vts1p; PDBTitle: rna recognition by the vts1 sam domain 73 d2cr5a1 not modelled 13.4 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 74 c3qq5A_ not modelled 13.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 75 c3njrB_ not modelled 13.2 17 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y methylase; PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus 76 c3c5yD_ not modelled 13.2 16 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 77 c2yvaB_ not modelled 12.9 15 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 78 c3hjhA_ not modelled 12.9 13 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 79 c3hm2G_ not modelled 12.6 17 PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae 80 d2b2na1 not modelled 12.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 81 c2pwyB_ not modelled 11.8 15 PDB header:transferase Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a m1a58 trna methyltransferase 82 d1ofla_ not modelled 11.6 13 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 83 c3e05B_ not modelled 11.4 15 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating); PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15 84 c3trjC_ not modelled 10.9 15 PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis 85 d1tk9a_ not modelled 10.6 18 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 86 c3icrA_ not modelled 10.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd 87 c2ziuA_ not modelled 10.5 9 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 88 c3ndjA_ not modelled 10.4 20 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 89 d1o54a_ not modelled 9.9 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 90 c3cxjB_ not modelled 9.7 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 91 c2ew9A_ not modelled 9.6 12 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 92 c1w17A_ not modelled 9.5 16 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 93 c3cg6A_ not modelled 9.4 7 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 94 c2rpiA_ not modelled 9.1 14 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h 95 d1jg5a_ not modelled 9.0 24 Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP 96 c3dh0B_ not modelled 8.9 16 PDB header:transferase Chain: B: PDB Molecule:sam dependent methyltransferase; PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus 97 d1x92a_ not modelled 8.9 15 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 98 c1dbgA_ not modelled 8.9 13 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 99 c2fe9A_ not modelled 8.8 21 PDB header:rna binding protein Chain: A: PDB Molecule:protein vts1; PDBTitle: solution structure of the vts1 sam domain in the presence2 of rna

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0