Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	R	H	I	T	F	T	V	F	I	T	T	S	M	N	T	L	A	T	G	M	V	P	E	T	S	V	L	L	V	D	E	K	R	G	E	A	S	I	N	I	K	N	T	D	D	H	P	S	L	L	Y	T	T	I	V	D	L	P
Secondary structure
SS confidence
Disorder		?																	?	?	?	?			?											?		?																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	S	N	K	S	I	R	L	I	P	T	Q	P	V	I	R	V	E	A	G	Q	V	Q	Q	V	R	F	L	L	Q	A	T	V	P	L	Q	S	E	E	L	K	R	V	T	F	E	G	I	P	P	K	D	D	K	S	S	R	V	T	V
Secondary structure
SS confidence
Disorder		?	?			?														?													?	?													?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	I	R	Q	D	L	P	V	L	I	H	P	A	S	L	P	E	E	R	E	T	W	K	F	L	E	W	R	K	N	G	D	Q	I	E	I	S	N	P	S	N	Y	V	V	R	M	T	L	Q	F	K	T	L	P	S	G	K	T	G	A
Secondary structure
SS confidence
Disorder														?		?	?	?	?	?	?		?										?																?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence		I	N	K	T	Y	F	L	P	H	T	S	T	T	T	A	L	T	N	A	T	D	T	K	V	E	F	Y	P	A	S	R	Y	G	Y	R	G	N	K	Y	V	T	D	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?							?					?		?	?	?	?																?	?				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z9s chain A Region: 17 - 223 Aligned: 193 Modelled: 203 Confidence: 100.0% Identity: 23% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 16 - 223 Aligned: 195 Modelled: 203 Confidence: 100.0% Identity: 18% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1qun chain A Region: 21 - 224 Aligned: 193 Modelled: 204 Confidence: 100.0% Identity: 17% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1qpx chain A Region: 21 - 218 Aligned: 187 Modelled: 198 Confidence: 100.0% Identity: 19% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1l4i chain A Region: 21 - 223 Aligned: 185 Modelled: 197 Confidence: 100.0% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3q48 chain B Region: 23 - 223 Aligned: 181 Modelled: 200 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 3f6i chain B Region: 21 - 220 Aligned: 179 Modelled: 200 Confidence: 100.0% Identity: 16% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 1p5v chain A domain 1 Region: 15 - 135 Aligned: 111 Modelled: 121 Confidence: 100.0% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 16 - 135 Aligned: 116 Modelled: 120 Confidence: 100.0% Identity: 19% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 21 - 138 Aligned: 118 Modelled: 118 Confidence: 100.0% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 21 - 136 Aligned: 114 Modelled: 116 Confidence: 100.0% Identity: 19% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 21 - 135 Aligned: 110 Modelled: 115 Confidence: 100.0% Identity: 21% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 138 - 224 Aligned: 82 Modelled: 87 Confidence: 99.8% Identity: 15% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 137 - 223 Aligned: 77 Modelled: 82 Confidence: 99.8% Identity: 18% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 137 - 223 Aligned: 78 Modelled: 87 Confidence: 99.7% Identity: 17% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 139 - 218 Aligned: 78 Modelled: 80 Confidence: 99.7% Identity: 21% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 135 - 223 Aligned: 77 Modelled: 89 Confidence: 99.7% Identity: 16% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 19 - 114 Aligned: 88 Modelled: 96 Confidence: 97.5% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 19 - 132 Aligned: 108 Modelled: 114 Confidence: 97.2% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 22 - 114 Aligned: 85 Modelled: 82 Confidence: 97.0% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1z9sA_ 2 c2co7B_ 3 c1qunA_ 4 c1qpxA_ 5 c1l4iA_ 6 c3q48B_ 7 c3f6iB_ 8 d1p5va1 9 d2co7b1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d2co7b2 16 d2j2za2 17 d1l4ia2 18 d1m1sa_ 19 d1grwa_ 20 d1rowa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1z9sA_ 100.0 23 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 2 c2co7B_ 100.0 18 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 3 c1qunA_ 100.0 17 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 4 c1qpxA_ 100.0 19 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 5 c1l4iA_ 100.0 18 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 6 c3q48B_ 100.0 20 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 7 c3f6iB_ 100.0 16 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 8 d1p5va1 100.0 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d2co7b1 100.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 100.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.8 15 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.8 18 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d2co7b2 99.7 17 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d2j2za2 99.7 21 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d1l4ia2 99.7 16 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1grwa_ 97.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1rowa_ 97.0 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 d1mspa_ not modelled 96.1 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 22 c2e6jA_ not modelled 96.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 23 c2qsvA_ not modelled 96.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 24 c3qisA_ not modelled 96.0 7 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 25 c2ys4A_ not modelled 95.6 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 26 c1z9oB_ not modelled 95.1 18 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 27 c3qbtH_ not modelled 94.5 8 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 28 d1wica_ not modelled 94.3 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 29 c3o0lB_ not modelled 89.5 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 30 d1ejxb_ not modelled 87.2 21 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 31 d4ubpb_ not modelled 86.6 23 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 32 d1e9ya1 not modelled 83.4 20 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 33 d1ufga_ not modelled 82.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 34 c2lllA_ not modelled 81.9 18 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 35 c3qgaD_ not modelled 81.2 16 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 36 d1e42a1 not modelled 80.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 37 d2vzsa2 not modelled 79.3 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 38 c1e9zA_ not modelled 79.2 19 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 39 c3jt0B_ not modelled 72.2 16 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 40 d1ifra_ not modelled 72.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 41 c1yycA_ not modelled 60.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 42 d1aoza2 not modelled 60.6 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 43 c2qvkA_ not modelled 59.9 10 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 44 c1e42A_ not modelled 56.7 14 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 45 d1hfua2 not modelled 54.6 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 46 c3eujB_ not modelled 51.8 9 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 47 c3ginB_ not modelled 49.2 12 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 48 d1xo8a_ not modelled 46.1 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 49 d1gyca2 not modelled 44.5 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 d1ivta_ not modelled 42.2 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 51 d1v10a2 not modelled 40.8 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 52 d2q9oa2 not modelled 38.8 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 53 d1kyaa2 not modelled 37.1 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 54 c3butA_ not modelled 36.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 55 c3h6aB_ not modelled 34.8 10 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 56 d2fwua1 not modelled 32.7 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 57 d1k3ra1 not modelled 30.6 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 58 c1v10A_ not modelled 29.7 10 PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals 59 c3isyA_ not modelled 28.9 15 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 60 d2phla2 not modelled 28.3 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 61 d1khua_ not modelled 26.6 10 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 62 c3ac0B_ not modelled 26.4 21 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 63 c3hs8A_ not modelled 25.0 14 PDB header:endocytosis Chain: A: PDB Molecule:adaptor protein complex ap-2, alpha 2 subunit; PDBTitle: intersectin 1-peptide-ap2 alpha ear complex 64 c3rb7E_ not modelled 24.1 13 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 65 c3fcsA_ not modelled 24.1 15 PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3 66 c1zpuE_ not modelled 19.3 16 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 67 c2x41A_ not modelled 18.0 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 68 d2dpka1 not modelled 18.0 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 69 d1ygsa_ not modelled 16.2 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 70 d1dd1a_ not modelled 15.1 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 71 c3ppsD_ not modelled 15.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 72 d1khxa_ not modelled 14.9 10 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 73 c1khxA_ not modelled 14.9 10 PDB header:transcription Chain: A: PDB Molecule:smad2; PDBTitle: crystal structure of a phosphorylated smad2 74 d1jz8a2 not modelled 14.6 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 75 c3tqzA_ not modelled 13.7 24 PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii 76 d1w8oa1 not modelled 13.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 77 d1exha_ not modelled 13.5 20 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 78 c2q9oA_ not modelled 12.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 79 c1wkwB_ not modelled 11.7 22 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 80 c2jwyA_ not modelled 10.8 12 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 81 c1l9mB_ not modelled 10.2 8 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 82 c3e9tD_ not modelled 10.1 14 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 83 d1mjsa_ not modelled 9.6 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 84 c2ii8F_ not modelled 9.4 14 PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer 85 c3e9uA_ not modelled 9.0 8 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 86 c1l5gA_ not modelled 8.9 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand 87 c1a65A_ not modelled 8.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus 88 c2qziA_ not modelled 7.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 89 d1ex0a2 not modelled 7.6 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 90 d1euwa_ not modelled 7.6 24 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 91 c2r39A_ not modelled 7.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 92 d1plca_ not modelled 7.1 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 93 c2l02B_ not modelled 6.7 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 94 c3rfrI_ not modelled 6.3 16 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 95 c1gycA_ not modelled 6.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions 96 c2phgB_ not modelled 6.1 33 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 97 c2pheC_ not modelled 6.1 33 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 98 c2frgP_ not modelled 5.9 12 PDB header:immune system Chain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1 99 c2qv2A_ not modelled 5.9 13 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a role of the lowe syndrome protein ocrl in early steps of2 the endocytic pathway

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0