18/01/2012 11:31:32 : INFO  : Run start: Wed Jan 18 11:31:32 GMT 2012
18/01/2012 11:31:32 : INFO  : Initialised job
18/01/2012 11:31:32 : INFO  : Renaming log file 'phyre2_20120118_113132.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/phyre_20120118_113132.log'
18/01/2012 11:31:32 : INFO  : Initialised job:
Sequence
>batch____
MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLP
ESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKRVTFEGIPPKDDKSSRVTV
SIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLPSGKTGA
INKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNKYVTDLK

18/01/2012 11:31:32 : INFO  : Checked sequence
18/01/2012 11:31:32 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 11:31:32 : INFO  : PSI-BLAST 3 iterations
18/01/2012 11:32:57 : INFO  : PSI-BLAST 5 iterations
18/01/2012 11:34:17 : INFO  : Finished PSI-BLAST
18/01/2012 11:34:17 : INFO  : Running Buildali to generate a3m file
18/01/2012 11:38:19 : INFO  : Converting to HMM
18/01/2012 11:38:19 : INFO  : Calibrating HMM
18/01/2012 11:38:25 : INFO  : Searching HMM database
18/01/2012 11:42:47 : INFO  : Finished buildali
18/01/2012 11:42:47 : INFO  : Predicting secondary structure
18/01/2012 11:42:47 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 11:42:47 : INFO  : Predicting Disordered regions
18/01/2012 11:42:47 : INFO  : Predicted Disorder (Disopred)
18/01/2012 11:42:47 : INFO  : Running memsat_svm check
18/01/2012 11:44:07 : INFO  : Running memsat_svm full
18/01/2012 11:47:07 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd166b8b34544e516'
18/01/2012 11:47:07 : INFO  : Initialising fold library search
18/01/2012 11:47:07 : INFO  : Initialised search input
18/01/2012 11:47:07 : INFO  : Building Ensemble models
18/01/2012 11:47:07 : INFO  : Building hh.c1z9sA_.model.1.pdb
18/01/2012 11:47:08 : INFO  : Building hh.c2co7B_.model.2.pdb
18/01/2012 11:47:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/hh.c2co7B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/c2co7B_.2.pdb
18/01/2012 11:47:08 : INFO  : Building hh.c1qunA_.model.3.pdb
18/01/2012 11:47:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/hh.c1qunA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/c1qunA_.3.pdb
18/01/2012 11:47:09 : INFO  : Building hh.c1qpxA_.model.4.pdb
18/01/2012 11:47:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/hh.c1qpxA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/c1qpxA_.4.pdb
18/01/2012 11:47:09 : INFO  : Building hh.c1l4iA_.model.5.pdb
18/01/2012 11:47:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/hh.c1l4iA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/c1l4iA_.5.pdb
18/01/2012 11:47:10 : INFO  : Building hh.c3q48B_.model.6.pdb
18/01/2012 11:47:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/hh.c3q48B_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d166b8b34544e516/c3q48B_.6.pdb
18/01/2012 11:47:10 : INFO  : Building c1z9sA_.1.pdb
18/01/2012 11:47:10 : INFO  : Building c2co7B_.2.pdb
18/01/2012 11:47:11 : INFO  : Building c1qunA_.3.pdb
18/01/2012 11:47:11 : INFO  : Building c1qpxA_.4.pdb
18/01/2012 11:47:12 : INFO  : Building c1l4iA_.5.pdb
18/01/2012 11:47:12 : INFO  : Building c3q48B_.6.pdb
18/01/2012 11:47:12 : INFO  : Building c3f6iB_.7.pdb
18/01/2012 11:47:13 : INFO  : Building d1p5va1.8.pdb
18/01/2012 11:47:13 : INFO  : Building d2co7b1.9.pdb
18/01/2012 11:47:13 : INFO  : Building d2j2za1.10.pdb
18/01/2012 11:47:13 : INFO  : Building d3bwuc1.11.pdb
18/01/2012 11:47:14 : INFO  : Building d1l4ia1.12.pdb
18/01/2012 11:47:14 : INFO  : Building d3bwuc2.13.pdb
18/01/2012 11:47:14 : INFO  : Building d1p5va2.14.pdb
18/01/2012 11:47:15 : INFO  : Building d2co7b2.15.pdb
18/01/2012 11:47:15 : INFO  : Building d2j2za2.16.pdb
18/01/2012 11:47:15 : INFO  : Building d1l4ia2.17.pdb
18/01/2012 11:47:16 : INFO  : Building d1m1sa_.18.pdb
18/01/2012 11:47:16 : INFO  : Building d1grwa_.19.pdb
18/01/2012 11:47:16 : INFO  : Building d1rowa_.20.pdb
18/01/2012 11:47:22 : INFO  : Finished HH model building
18/01/2012 11:47:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 11:47:27 : INFO  : html domain output complete ID 'd166b8b34544e516'
18/01/2012 12:15:35 : INFO  : Run end  : Wed Jan 18 12:15:35 GMT 2012
