Phyre 2 Results for P28722

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Email | l.a.kelley@imperial.ac.uk
Description | P28722
Date | Thu Jan 5 11:45:14 GMT 2012
Unique Job ID | d166b8b34544e516

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1z9sA_
Top template information
PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex
Confidence and coverage
Confidence: | 100.0% | Coverage: | 86%
193 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | R | H | I | T | F | T | V | F | I | T | T | S | M | N | T | L | A | T | G | M | V | P | E | T | S | V | L | L | V | D | E | K | R | G | E | A | S | I | N | I | K | N | T | D | D | H | P | S | L | L | Y | T | T | I | V | D | L | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | S | N | K | S | I | R | L | I | P | T | Q | P | V | I | R | V | E | A | G | Q | V | Q | Q | V | R | F | L | L | Q | A | T | V | P | L | Q | S | E | E | L | K | R | V | T | F | E | G | I | P | P | K | D | D | K | S | S | R | V | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | I | R | Q | D | L | P | V | L | I | H | P | A | S | L | P | E | E | R | E | T | W | K | F | L | E | W | R | K | N | G | D | Q | I | E | I | S | N | P | S | N | Y | V | V | R | M | T | L | Q | F | K | T | L | P | S | G | K | T | G | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | .
Sequence |  | I | N | K | T | Y | F | L | P | H | T | S | T | T | T | A | L | T | N | A | T | D | T | K | V | E | F | Y | P | A | S | R | Y | G | Y | R | G | N | K | Y | V | T | D | L | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  | ? |  |  |  |  | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1z9sA_ |

### PDB 1z9s chain A

Region: 17 - 223
Aligned: 193
Modelled: 203
Confidence: 100.0%
Identity: 23%
PDB header:chaperone/immune system
Chain: A: PDB Molecule:chaperone protein caf1m;
PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex

Phyre2
2 |
| c2co7B_ |

### PDB 2co7 chain B

Region: 16 - 223
Aligned: 195
Modelled: 203
Confidence: 100.0%
Identity: 18%
PDB header:fibril protein
Chain: B: PDB Molecule:putative fimbriae assembly chaperone;
PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii)

Phyre2
3 |
| c1qunA_ |

### PDB 1qun chain A

Region: 21 - 224
Aligned: 193
Modelled: 204
Confidence: 100.0%
Identity: 17%
PDB header:chaperone/structural protein
Chain: A: PDB Molecule:papd-like chaperone fimc;
PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli

Phyre2
4 |
| c1qpxA_ |

### PDB 1qpx chain A

Region: 21 - 218
Aligned: 187
Modelled: 198
Confidence: 100.0%
Identity: 19%
PDB header:chaperone
Chain: A: PDB Molecule:papd chaperone;
PDBTitle: crystal structures of self-capping papd chaperone homodimers

Phyre2
5 |
| c1l4iA_ |

### PDB 1l4i chain A

Region: 21 - 223
Aligned: 185
Modelled: 197
Confidence: 100.0%
Identity: 18%
PDB header:chaperone
Chain: A: PDB Molecule:sfae protein;
PDBTitle: crystal structure of the periplasmic chaperone sfae

Phyre2
6 |
| c3q48B_ |

### PDB 3q48 chain B

Region: 23 - 223
Aligned: 181
Modelled: 200
Confidence: 100.0%
Identity: 20%
PDB header:chaperone
Chain: B: PDB Molecule:chaperone cupb2;
PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone

Phyre2
7 |
| c3f6iB_ |

### PDB 3f6i chain B

Region: 21 - 220
Aligned: 179
Modelled: 200
Confidence: 100.0%
Identity: 16%
PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein faee;
PDBTitle: structure of the semet labeled f4 fibrial chaperone faee

Phyre2
8 |
| d1p5va1 |

### PDB 1p5v chain A domain 1

Region: 15 - 135
Aligned: 111
Modelled: 121
Confidence: 100.0%
Identity: 27%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
9 |
| d2co7b1 |

### PDB 2co7 chain B domain 1

Region: 16 - 135
Aligned: 116
Modelled: 120
Confidence: 100.0%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
10 |
| d2j2za1 |

### PDB 2j2z chain A domain 1

Region: 21 - 138
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
11 |
| d3bwuc1 |

### PDB 3bwu chain C domain 1

Region: 21 - 136
Aligned: 114
Modelled: 116
Confidence: 100.0%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
12 |
| d1l4ia1 |

### PDB 1l4i chain A domain 1

Region: 21 - 135
Aligned: 110
Modelled: 115
Confidence: 100.0%
Identity: 21%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
13 |
| d3bwuc2 |

### PDB 3bwu chain C domain 2

Region: 138 - 224
Aligned: 82
Modelled: 87
Confidence: 99.8%
Identity: 15%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2
14 |
| d1p5va2 |

### PDB 1p5v chain A domain 2

Region: 137 - 223
Aligned: 77
Modelled: 82
Confidence: 99.8%
Identity: 18%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2
15 |
| d2co7b2 |

### PDB 2co7 chain B domain 2

Region: 137 - 223
Aligned: 78
Modelled: 87
Confidence: 99.7%
Identity: 17%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2
16 |
| d2j2za2 |

### PDB 2j2z chain A domain 2

Region: 139 - 218
Aligned: 78
Modelled: 80
Confidence: 99.7%
Identity: 21%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2
17 |
| d1l4ia2 |

### PDB 1l4i chain A domain 2

Region: 135 - 223
Aligned: 77
Modelled: 89
Confidence: 99.7%
Identity: 16%
Fold: C2 domain-like
Superfamily: Periplasmic chaperone C-domain
Family: Periplasmic chaperone C-domain

Phyre2
18 |
| d1m1sa_ |

### PDB 1m1s chain A

Region: 19 - 114
Aligned: 88
Modelled: 96
Confidence: 97.5%
Identity: 11%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2
19 |
| d1grwa_ |

### PDB 1grw chain A

Region: 19 - 132
Aligned: 108
Modelled: 114
Confidence: 97.2%
Identity: 14%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2
20 |
| d1rowa_ |

### PDB 1row chain A

Region: 22 - 114
Aligned: 85
Modelled: 82
Confidence: 97.0%
Identity: 13%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: MSP-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1z9sA_ |
|  | 100.0 | 23 | PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex
2 | c2co7B_ |
|  | 100.0 | 18 | PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii)
3 | c1qunA_ |
|  | 100.0 | 17 | PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli
4 | c1qpxA_ |
|  | 100.0 | 19 | PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers
5 | c1l4iA_ |
|  | 100.0 | 18 | PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae
6 | c3q48B_ |
|  | 100.0 | 20 | PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone
7 | c3f6iB_ |
|  | 100.0 | 16 | PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee
8 | d1p5va1 |
|  | 100.0 | 27 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
9 | d2co7b1 |
|  | 100.0 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
10 | d2j2za1 |
|  | 100.0 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
11 | d3bwuc1 |
|  | 100.0 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
12 | d1l4ia1 |
|  | 100.0 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
13 | d3bwuc2 |
|  | 99.8 | 15 | Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain
14 | d1p5va2 |
|  | 99.8 | 18 | Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain
15 | d2co7b2 |
|  | 99.7 | 17 | Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain
16 | d2j2za2 |
|  | 99.7 | 21 | Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain
17 | d1l4ia2 |
|  | 99.7 | 16 | Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain
18 | d1m1sa_ |
|  | 97.5 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like
19 | d1grwa_ |
|  | 97.2 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like
20 | d1rowa_ |
|  | 97.0 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like
21 | d1mspa_ |
| not modelled | 96.1 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like
22 | c2e6jA_ |
| not modelled | 96.0 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein
23 | c2qsvA_ |
| not modelled | 96.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83
24 | c3qisA_ |
| not modelled | 96.0 | 7 | PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl
25 | c2ys4A_ |
| not modelled | 95.6 | 6 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human
26 | c1z9oB_ |
| not modelled | 95.1 | 18 | PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif
27 | c3qbtH_ |
| not modelled | 94.5 | 8 | PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp
28 | d1wica_ |
| not modelled | 94.3 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like
29 | c3o0lB_ |
| not modelled | 89.5 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
30 | d1ejxb_ |
| not modelled | 87.2 | 21 | Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit
31 | d4ubpb_ |
| not modelled | 86.6 | 23 | Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit
32 | d1e9ya1 |
| not modelled | 83.4 | 20 | Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit
33 | d1ufga_ |
| not modelled | 82.7 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
34 | c2lllA_ |
| not modelled | 81.9 | 18 | PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
35 | c3qgaD_ |
| not modelled | 81.2 | 16 | PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
36 | d1e42a1 |
| not modelled | 80.6 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like
37 | d2vzsa2 |
| not modelled | 79.3 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain
38 | c1e9zA_ |
| not modelled | 79.2 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease
39 | c3jt0B_ |
| not modelled | 72.2 | 16 | PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a
40 | d1ifra_ |
| not modelled | 72.1 | 12 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
41 | c1yycA_ |
| not modelled | 60.9 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1
42 | d1aoza2 |
| not modelled | 60.6 | 14 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
43 | c2qvkA_ |
| not modelled | 59.9 | 10 | PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis
44 | c1e42A_ |
| not modelled | 56.7 | 14 | PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2
45 | d1hfua2 |
| not modelled | 54.6 | 14 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
46 | c3eujB_ |
| not modelled | 51.8 | 9 | PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer
47 | c3ginB_ |
| not modelled | 49.2 | 12 | PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1
48 | d1xo8a_ |
| not modelled | 46.1 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like
49 | d1gyca2 |
| not modelled | 44.5 | 17 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
50 | d1ivta_ |
| not modelled | 42.2 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
51 | d1v10a2 |
| not modelled | 40.8 | 13 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
52 | d2q9oa2 |
| not modelled | 38.8 | 17 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
53 | d1kyaa2 |
| not modelled | 37.1 | 13 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins
54 | c3butA_ |
| not modelled | 36.8 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus
55 | c3h6aB_ |
| not modelled | 34.8 | 10 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium
56 | d2fwua1 |
| not modelled | 32.7 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain
57 | d1k3ra1 |
| not modelled | 30.6 | 11 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain
58 | c1v10A_ |
| not modelled | 29.7 | 10 | PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals
59 | c3isyA_ |
| not modelled | 28.9 | 15 | PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
60 | d2phla2 |
| not modelled | 28.3 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
61 | d1khua_ |
| not modelled | 26.6 | 10 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain
62 | c3ac0B_ |
| not modelled | 26.4 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
63 | c3hs8A_ |
| not modelled | 25.0 | 14 | PDB header:endocytosis Chain: A: PDB Molecule:adaptor protein complex ap-2, alpha 2 subunit; PDBTitle: intersectin 1-peptide-ap2 alpha ear complex
64 | c3rb7E_ |
| not modelled | 24.1 | 13 | PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2
65 | c3fcsA_ |
| not modelled | 24.1 | 15 | PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3
66 | c1zpuE_ |
| not modelled | 19.3 | 16 | PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import
67 | c2x41A_ |
| not modelled | 18.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose
68 | d2dpka1 |
| not modelled | 18.0 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain
69 | d1ygsa_ |
| not modelled | 16.2 | 13 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain
70 | d1dd1a_ |
| not modelled | 15.1 | 13 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain
71 | c3ppsD_ |
| not modelled | 15.0 | 17 | PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria
72 | d1khxa_ |
| not modelled | 14.9 | 10 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain
73 | c1khxA_ |
| not modelled | 14.9 | 10 | PDB header:transcription Chain: A: PDB Molecule:smad2; PDBTitle: crystal structure of a phosphorylated smad2
74 | d1jz8a2 |
| not modelled | 14.6 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain
75 | c3tqzA_ |
| not modelled | 13.7 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii
76 | d1w8oa1 |
| not modelled | 13.5 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes
77 | d1exha_ |
| not modelled | 13.5 | 20 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II
78 | c2q9oA_ |
| not modelled | 12.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase
79 | c1wkwB_ |
| not modelled | 11.7 | 22 | PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide
80 | c2jwyA_ |
| not modelled | 10.8 | 12 | PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540
81 | c1l9mB_ |
| not modelled | 10.2 | 8 | PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
82 | c3e9tD_ |
| not modelled | 10.1 | 14 | PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain
83 | d1mjsa_ |
| not modelled | 9.6 | 11 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain
84 | c2ii8F_ |
| not modelled | 9.4 | 14 | PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer
85 | c3e9uA_ |
| not modelled | 9.0 | 8 | PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain
86 | c1l5gA_ |
| not modelled | 8.9 | 13 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand
87 | c1a65A_ |
| not modelled | 8.5 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus
88 | c2qziA_ |
| not modelled | 7.7 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311.
89 | d1ex0a2 |
| not modelled | 7.6 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains
90 | d1euwa_ |
| not modelled | 7.6 | 24 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
91 | c2r39A_ |
| not modelled | 7.3 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus
92 | d1plca_ |
| not modelled | 7.1 | 16 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like
93 | c2l02B_ |
| not modelled | 6.7 | 17 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
94 | c3rfrI_ |
| not modelled | 6.3 | 16 | PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
95 | c1gycA_ |
| not modelled | 6.2 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions
96 | c2phgB_ |
| not modelled | 6.1 | 33 | PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib
97 | c2pheC_ |
| not modelled | 6.1 | 33 | PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4
98 | c2frgP_ |
| not modelled | 5.9 | 12 | PDB header:immune system Chain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1
99 | c2qv2A_ |
| not modelled | 5.9 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a role of the lowe syndrome protein ocrl in early steps of2 the endocytic pathway

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0