Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	K	F	G	E	G	R	D	P	Y	L	Y	P	G	L	D	I	M	R	N	R	L	N	I	R	Q	Q	Q	R	L	E	Q	A	A	Y	E	M	T	A	L	R	A	A	T	I	E	L	G	P	L	V	R	G	L	P	H	L	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	I	H	R	Q	L	Y	Q	D	I	F	D	W	A	G	Q	L	R	E	V	D	I	Y	Q	G	D	T	P	F	C	H	F	A	Y	I	E	K	E	G	N	A	L	M	Q	D	L	E	E	E	G	Y	L	V	G	L	E	K	A	K	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	E	R	L	A	H	Y	Y	C	E	I	N	V	L	H	P	F	R	V	G	S	G	L	A	Q	R	I	F	F	E	Q	L	A	I	H	A	G	Y	Q	L	S	W	Q	G	I	E	K	E	A	W	N	Q	A	N	Q	S	G	A	M	G
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence		D	L	T	A	L	Q	M	I	F	S	K	V	V	S	E	A	G	E	S	E
Secondary structure
SS confidence
Disorder																		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vza chain D Region: 10 - 195 Aligned: 186 Modelled: 186 Confidence: 100.0% Identity: 32% PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa Phyre2 PDB 2f6s chain A domain 1 Region: 28 - 200 Aligned: 157 Modelled: 161 Confidence: 100.0% Identity: 24% Fold: Fic-like Superfamily: Fic-like Family: Fic-like Phyre2 PDB 2f6s chain A Region: 28 - 200 Aligned: 157 Modelled: 161 Confidence: 100.0% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cell filamentation protein, putative; PDBTitle: structure of cell filamentation protein (fic) from helicobacter pylori Phyre2 PDB 2g03 chain A domain 1 Region: 28 - 200 Aligned: 157 Modelled: 161 Confidence: 100.0% Identity: 26% Fold: Fic-like Superfamily: Fic-like Family: Fic-like Phyre2 PDB 3cuc chain B Region: 19 - 198 Aligned: 177 Modelled: 180 Confidence: 100.0% Identity: 12% PDB header:signaling protein Chain: B: PDB Molecule:protein of unknown function with a fic domain; PDBTitle: crystal structure of a fic domain containing signaling protein2 (bt_2513) from bacteroides thetaiotaomicron vpi-5482 at 2.71 a3 resolution Phyre2 PDB 3eqx chain B Region: 25 - 198 Aligned: 170 Modelled: 174 Confidence: 99.9% Identity: 12% PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution Phyre2 PDB 3n3v chain A Region: 33 - 200 Aligned: 164 Modelled: 168 Confidence: 99.9% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:adenosine monophosphate-protein transferase ibpa; PDBTitle: crystal structure of ibpafic2-h3717a in complex with adenylylated2 cdc42 Phyre2 PDB 3dd7 chain A Region: 54 - 192 Aligned: 118 Modelled: 139 Confidence: 99.1% Identity: 12% PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd Phyre2 PDB 3let chain B Region: 38 - 157 Aligned: 109 Modelled: 120 Confidence: 98.3% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops Phyre2 PDB 1s0p chain A Region: 84 - 179 Aligned: 95 Modelled: 96 Confidence: 83.0% Identity: 13% Fold: N-terminal domain of adenylylcyclase associated protein, CAP Superfamily: N-terminal domain of adenylylcyclase associated protein, CAP Family: N-terminal domain of adenylylcyclase associated protein, CAP Phyre2 PDB 3etj chain A domain 2 Region: 140 - 162 Aligned: 18 Modelled: 23 Confidence: 59.7% Identity: 33% Fold: PreATP-grasp domain Superfamily: PreATP-grasp domain Family: BC N-terminal domain-like Phyre2 PDB 1yl7 chain A domain 1 Region: 140 - 161 Aligned: 22 Modelled: 22 Confidence: 30.7% Identity: 23% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 1yn9 chain B Region: 140 - 175 Aligned: 36 Modelled: 36 Confidence: 26.6% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:polynucleotide 5'-phosphatase; PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate Phyre2 PDB 1s2x chain A Region: 96 - 143 Aligned: 48 Modelled: 46 Confidence: 23.0% Identity: 15% Fold: STAT-like Superfamily: Cag-Z Family: Cag-Z Phyre2 PDB 1s2x chain A Region: 96 - 143 Aligned: 48 Modelled: 46 Confidence: 23.0% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:cag-z; PDBTitle: crystal structure of cag-z from helicobacter pylori Phyre2 PDB 2img chain A Region: 138 - 160 Aligned: 23 Modelled: 23 Confidence: 22.8% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion Phyre2 PDB 3awf chain C Region: 88 - 159 Aligned: 60 Modelled: 71 Confidence: 21.2% Identity: 10% PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:voltage-sensor containing phosphatase; PDBTitle: crystal structure of pten-like domain of ci-vsp (236-576) Phyre2 PDB 3rgq chain A Region: 140 - 161 Aligned: 22 Modelled: 22 Confidence: 20.6% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p Phyre2 PDB 1hdg chain O domain 1 Region: 140 - 166 Aligned: 27 Modelled: 27 Confidence: 19.1% Identity: 15% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 1ohe chain A domain 2 Region: 140 - 161 Aligned: 22 Modelled: 22 Confidence: 18.4% Identity: 14% Fold: (Phosphotyrosine protein) phosphatases II Superfamily: (Phosphotyrosine protein) phosphatases II Family: Dual specificity phosphatase-like Phyre2 1 c2vzaD_ 2 d2f6sa1 3 c2f6sA_ 4 d2g03a1 5 c3cucB_ 6 c3eqxB_ 7 c3n3vA_ 8 c3dd7A_ 9 c3letB_ 10 d1s0pa_ 11 d3etja2 12 d1yl7a1 13 c1yn9B_ 14 d1s2xa_ 15 c1s2xA_ 16 c2imgA_ 17 c3awfC_ 18 c3rgqA_ 19 d1hdgo1 20 d1ohea2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vzaD_ 100.0 32 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 2 d2f6sa1 100.0 24 Fold:Fic-like Superfamily:Fic-like Family:Fic-like 3 c2f6sA_ 100.0 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cell filamentation protein, putative; PDBTitle: structure of cell filamentation protein (fic) from helicobacter pylori 4 d2g03a1 100.0 26 Fold:Fic-like Superfamily:Fic-like Family:Fic-like 5 c3cucB_ 100.0 12 PDB header:signaling protein Chain: B: PDB Molecule:protein of unknown function with a fic domain; PDBTitle: crystal structure of a fic domain containing signaling protein2 (bt_2513) from bacteroides thetaiotaomicron vpi-5482 at 2.71 a3 resolution 6 c3eqxB_ 99.9 12 PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution 7 c3n3vA_ 99.9 12 PDB header:transferase Chain: A: PDB Molecule:adenosine monophosphate-protein transferase ibpa; PDBTitle: crystal structure of ibpafic2-h3717a in complex with adenylylated2 cdc42 8 c3dd7A_ 99.1 12 PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd 9 c3letB_ 98.3 16 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops 10 d1s0pa_ 83.0 13 Fold:N-terminal domain of adenylylcyclase associated protein, CAP Superfamily:N-terminal domain of adenylylcyclase associated protein, CAP Family:N-terminal domain of adenylylcyclase associated protein, CAP 11 d3etja2 59.7 33 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 12 d1yl7a1 30.7 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 13 c1yn9B_ 26.6 17 PDB header:hydrolase Chain: B: PDB Molecule:polynucleotide 5'-phosphatase; PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate 14 d1s2xa_ 23.0 15 Fold:STAT-like Superfamily:Cag-Z Family:Cag-Z 15 c1s2xA_ 23.0 15 PDB header:unknown function Chain: A: PDB Molecule:cag-z; PDBTitle: crystal structure of cag-z from helicobacter pylori 16 c2imgA_ 22.8 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion 17 c3awfC_ 21.2 10 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:voltage-sensor containing phosphatase; PDBTitle: crystal structure of pten-like domain of ci-vsp (236-576) 18 c3rgqA_ 20.6 9 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p 19 d1hdgo1 19.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 20 d1ohea2 18.4 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 21 d1diha1 not modelled 18.3 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 22 c1yl7F_ not modelled 18.1 23 PDB header:oxidoreductase Chain: F: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: the crystal structure of mycobacterium tuberculosis2 dihydrodipicolinate reductase (rv2773c) in complex with nadh (crystal3 form c) 23 c2vfwB_ not modelled 17.4 22 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 24 c3ijpA_ not modelled 17.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution 25 c2vg2C_ not modelled 16.9 25 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 26 d1u8fo1 not modelled 16.5 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 27 d1j0xo1 not modelled 16.4 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 28 c2gwoC_ not modelled 15.1 17 PDB header:hydrolase Chain: C: PDB Molecule:dual specificity protein phosphatase 13; PDBTitle: crystal structure of tmdp 29 d1mkpa_ not modelled 15.0 9 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 30 d1i32a1 not modelled 14.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 31 d1ggaa1 not modelled 14.3 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 32 d1k3ta1 not modelled 13.8 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 33 c2d2rA_ not modelled 13.5 25 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 34 d3gpdg1 not modelled 13.3 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 35 c2wgpA_ not modelled 13.0 13 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 14; PDBTitle: crystal structure of human dual specificity phosphatase 14 36 c2y96A_ not modelled 13.0 21 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 37 c3ihtB_ not modelled 13.0 40 PDB header:transferase Chain: B: PDB Molecule:s-adenosyl-l-methionine methyl transferase; PDBTitle: crystal structure of s-adenosyl-l-methionine methyl transferase2 (yp_165822.1) from silicibacter pomeroyi dss-3 at 1.80 a resolution 38 d1ueha_ not modelled 12.7 25 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 39 c1zzwA_ not modelled 12.0 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 40 d1vm6a3 not modelled 11.9 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 41 c3h2zA_ not modelled 11.7 31 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri 42 c1wrmA_ not modelled 11.5 4 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 22; PDBTitle: crystal structure of jsp-1 43 c2c46B_ not modelled 11.5 9 PDB header:transferase Chain: B: PDB Molecule:mrna capping enzyme; PDBTitle: crystal structure of the human rna guanylyltransferase and2 5'-phosphatase 44 d2j0141 not modelled 11.4 44 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 45 c2j034_ not modelled 11.4 44 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii. 46 c2e0tA_ not modelled 11.4 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 47 c2i6oA_ not modelled 11.2 23 PDB header:hydrolase Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n 48 d1rm4a1 not modelled 11.1 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 49 c3emuA_ not modelled 10.9 17 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 50 c1i32D_ not modelled 10.9 15 PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors 51 c1jp3A_ not modelled 10.7 25 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 52 c3qvoA_ not modelled 10.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nmra family protein; PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri. 53 c2p1nD_ not modelled 10.3 10 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 54 c2r0bA_ not modelled 10.1 9 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 55 c2nt2C_ not modelled 9.7 13 PDB header:hydrolase Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2; PDBTitle: crystal structure of slingshot phosphatase 2 56 c1hdgO_ not modelled 9.6 15 PDB header:oxidoreductase (aldehy(d)-nad(a)) Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution 57 c2g6zB_ not modelled 9.5 17 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 5; PDBTitle: crystal structure of human dusp5 58 c1drwA_ not modelled 9.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: escherichia coli dhpr/nhdh complex 59 d2b4ro1 not modelled 9.0 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 60 c3h2sA_ not modelled 8.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19. 61 d1vs6z1 not modelled 8.5 44 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L31p 62 d1cf2o1 not modelled 8.5 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 63 d1bf4a_ not modelled 8.4 30 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 64 d1dssg1 not modelled 8.3 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 65 d1hdoa_ not modelled 8.2 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 66 c2hcmA_ not modelled 8.1 22 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium 67 c3cieC_ not modelled 7.9 14 PDB header:oxidoreductase Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum 68 c3ew7A_ not modelled 7.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162. 69 d1m3ga_ not modelled 7.7 17 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 70 c2oudA_ not modelled 7.6 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 71 c1yz4A_ not modelled 7.6 13 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 72 d2hf5a1 not modelled 7.6 15 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 73 d1vhra_ not modelled 7.6 13 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 74 c3s4oB_ not modelled 7.5 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein; PDBTitle: protein tyrosine phosphatase (putative) from leishmania major 75 c3hq4R_ not modelled 7.4 14 PDB header:oxidoreductase Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution 76 c2b664_ not modelled 7.4 44 PDB header:ribosome Chain: 4: PDB Molecule:50s ribosomal protein l31; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 77 d2pkqo1 not modelled 7.4 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 78 c3bbo1_ not modelled 7.4 44 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein l31; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 79 d1gado1 not modelled 7.2 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 80 c2d2iO_ not modelled 7.1 22 PDB header:oxidoreductase Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+ 81 d1obfo1 not modelled 7.1 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 82 d1f75a_ not modelled 7.0 25 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 83 c1yx7A_ not modelled 6.9 5 PDB header:metal binding protein Chain: A: PDB Molecule:calsensin; PDBTitle: nmr structure of calsensin, energy minimized average2 structure. 84 c1vm6B_ not modelled 6.6 25 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520) from2 thermotoga maritima at 2.27 a resolution 85 c3nmeA_ not modelled 6.6 27 PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase 86 c2ep7B_ not modelled 6.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5 87 c3e8xA_ not modelled 6.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad-dependent epimerase/dehydratase; PDBTitle: putative nad-dependent epimerase/dehydratase from bacillus halodurans. 88 c3docD_ not modelled 6.3 15 PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis 89 c2b4rQ_ not modelled 6.2 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site 90 c2i5pO_ not modelled 6.2 14 PDB header:oxidoreductase Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus 91 d1i9sa_ not modelled 6.2 8 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 92 c2jx3A_ not modelled 6.1 33 PDB header:dna binding protein Chain: A: PDB Molecule:protein dek; PDBTitle: nmr solution structure of the n-terminal domain of dek 93 c3sthA_ not modelled 6.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii 94 c2hwyB_ not modelled 6.0 33 PDB header:rna binding protein Chain: B: PDB Molecule:protein smg5; PDBTitle: structure of pin domain of human smg5. 95 d3cmco1 not modelled 5.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 c3n0aA_ not modelled 5.7 11 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase auxilin; PDBTitle: crystal structure of auxilin (40-400) 97 c2aucC_ not modelled 5.7 17 PDB header:membrane protein Chain: C: PDB Molecule:myosin a tail interacting protein; PDBTitle: structure of the plasmodium mtip-myoa complex, a key component of the2 parasite invasion motor 98 c2p4dA_ not modelled 5.6 9 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors 99 c3oakC_ not modelled 5.5 60 PDB header:transcription Chain: C: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0