Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ABW0
DateThu Jan 5 11:16:30 GMT 2012
Unique Job IDcc81a9c98213d71c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1fqta_
Top template information
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
Confidence and coverage
Confidence:100.0% Coverage: 99%
105 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGYLEDDATV
Secondary structure 
SS confidence 
Disorder  ???
Disorder confidence 
 
   .........70.........80.........90.........100......
Sequence  ECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLPEAQP
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1fqt chain A

3D model

Region: 1 - 105
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 39%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2

PDB 2qpz chain A

3D model

Region: 1 - 102
Aligned: 101
Modelled: 102
Confidence: 100.0%
Identity: 45%
PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin

Phyre2

PDB 2i7f chain B

3D model

Region: 2 - 102
Aligned: 100
Modelled: 101
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin

Phyre2

PDB 2de7 chain E

3D model

Region: 2 - 104
Aligned: 102
Modelled: 103
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2

PDB 3gce chain A

3D model

Region: 2 - 101
Aligned: 100
Modelled: 100
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177

Phyre2

PDB 3c0d chain A domain 1

3D model

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 100.0%
Identity: 25%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 3dqy chain A

3D model

Region: 2 - 105
Aligned: 102
Modelled: 104
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin

Phyre2

PDB 2de6 chain A domain 1

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 24%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1z01 chain A domain 1

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 31%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1vm9 chain A

3D model

Region: 2 - 106
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 27%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2

PDB 3d89 chain A

3D model

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 22%
PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus

Phyre2

PDB 2jza chain A domain 1

3D model

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 25%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 2de7 chain B

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2

PDB 3gkq chain B

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1

Phyre2

PDB 2jo6 chain A domain 1

3D model

Region: 1 - 100
Aligned: 99
Modelled: 100
Confidence: 99.9%
Identity: 17%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 3gcf chain C

3D model

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177

Phyre2

PDB 2zyl chain A

3D model

Region: 2 - 106
Aligned: 103
Modelled: 105
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis

Phyre2

PDB 1z01 chain D

3D model

Region: 3 - 105
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 32%
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction

Phyre2

PDB 3n0q chain A

3D model

Region: 2 - 106
Aligned: 104
Modelled: 105
Confidence: 99.9%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution

Phyre2

PDB 3gte chain B

3D model

Region: 3 - 106
Aligned: 102
Modelled: 104
Confidence: 99.9%
Identity: 23%
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron

Phyre2
1
d1fqta_
2
c2qpzA_
3
c2i7fB_
4
c2de7E_
5
c3gceA_
6
d3c0da1
7
c3dqyA_
8
d2de6a1
9
d1z01a1
10
d1vm9a_
11
c3d89A_
12
d2jzaa1
13
c2de7B_
14
c3gkqB_
15
d2jo6a1
16
c3gcfC_
17
c2zylA_
18
c1z01D_
19
c3n0qA_
20
c3gteB_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1fqta_
100.0 39 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
2c2qpzA_
100.0 45 PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
3c2i7fB_
100.0 40 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
4c2de7E_
100.0 34 PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
5c3gceA_
100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
6d3c0da1
100.0 25 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
7c3dqyA_
100.0 39 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
8d2de6a1
99.9 24 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
9d1z01a1
99.9 31 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
10d1vm9a_
99.9 27 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
11c3d89A_
99.9 22 PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
12d2jzaa1
99.9 25 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
13c2de7B_
99.9 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
14c3gkqB_
99.9 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1
15d2jo6a1
99.9 17 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
16c3gcfC_
99.9 28 PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
17c2zylA_
99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
18c1z01D_
99.9 32 PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction
19c3n0qA_
99.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
20c3gteB_
99.9 23 PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron
21d1ulia1
not modelled 99.9 16 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
22d1wqla1
not modelled 99.9 14 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
23d2bmoa1
not modelled 99.9 14 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
24c1uljA_
not modelled 99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
25d2b1xa1
not modelled 99.9 23 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
26c1wqlA_
not modelled 99.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
27d1o7na1
not modelled 99.9 18 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
28d1g8kb_
not modelled 99.9 22 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
29c2gbxE_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
30c2hmnA_
not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
31c2b1xE_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
32d3cx5e1
not modelled 99.9 16 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
33d1rfsa_
not modelled 99.8 17 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
34d1q90c_
not modelled 99.8 19 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
35d1riea_
not modelled 99.8 19 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
36d1nyka_
not modelled 99.8 19 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
37d2e74d1
not modelled 99.8 20 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
38c2e76D_
not modelled 99.7 19 PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
39c1p84E_
not modelled 99.7 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
40c2nvgA_
not modelled 99.7 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
41c2fyuE_
not modelled 99.7 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
42d1jm1a_
not modelled 99.6 28 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
43c2fynO_
not modelled 99.6 20 PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
44d2hf1a1
not modelled 69.9 14 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
45d2jnya1
not modelled 69.8 14 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
46c2jr6A_
not modelled 62.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
47d2pk7a1
not modelled 62.9 9 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
48c2js4A_
not modelled 60.6 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
49c2kpiA_
not modelled 56.1 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
50c2w3nA_
not modelled 36.3 29 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase 2;
PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
51c3lasA_
not modelled 32.8 25 PDB header:lyase
Chain: A: PDB Molecule:putative carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
52d1ddza2
not modelled 30.5 14 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
53c1ylkA_
not modelled 28.9 31 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322;
PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
54c1ddzA_
not modelled 28.9 18 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase;
PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
55c3ucoB_
not modelled 28.8 25 PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
56c3eyxB_
not modelled 28.7 9 PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
57c2a8cE_
not modelled 27.5 15 PDB header:lyase
Chain: E: PDB Molecule:carbonic anhydrase 2;
PDBTitle: haemophilus influenzae beta-carbonic anhydrase
58d1ekja_
not modelled 26.5 8 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
59d1ddza1
not modelled 26.4 18 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
60c2a5vB_
not modelled 24.9 23 PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic
PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
61d1i6pa_
not modelled 24.8 14 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
62d1g5ca_
not modelled 23.2 21 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
63c3eoiB_
not modelled 12.6 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:pilm;
PDBTitle: crystal structure of putative protein pilm from escherichia coli b7a
64c2k5rA_
not modelled 12.6 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein xf2673;
PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
65c2xk0A_
not modelled 12.0 17 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
66d2j7ja2
not modelled 11.0 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67d1ubdc1
not modelled 10.6 33 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
68d1r2za3
not modelled 10.2 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
69c3hg9B_
not modelled 10.1 5 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:pilm;
PDBTitle: crystal structure of putative pilm protein from pseudomonas aeruginosa2 2192
70d1l1ta3
not modelled 8.8 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
71d1tdza3
not modelled 8.8 27 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
72d2c42a2
not modelled 8.1 8 Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
73d1h7va_
not modelled 7.9 15 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
74d1e44b_
not modelled 7.6 38 Fold:Ribonuclease domain of colicin E3
Superfamily:Ribonuclease domain of colicin E3
Family:Ribonuclease domain of colicin E3
75c2w8xB_
not modelled 7.6 15 PDB header:membrane protein
Chain: B: PDB Molecule:ion-channel modulator raklp;
PDBTitle: structure of the tick ion-channel modulator ra-klp
76d2aqaa1
not modelled 7.5 17 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
77c2opfA_
not modelled 7.5 18 PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
78c3izbP_
not modelled 7.3 40 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
79d1dgwa_
not modelled 7.2 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
80c2kn9A_
not modelled 7.2 15 PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
81c2j6aA_
not modelled 7.1 17 PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
82c2eqjA_
not modelled 6.9 17 PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
83d1ee8a3
not modelled 6.6 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
84c3e59A_
not modelled 6.5 11 PDB header:transferase
Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca;
PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa
85d1ibia1
not modelled 6.5 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
86d1k3xa3
not modelled 6.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
87c2e5pA_
not modelled 6.3 17 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
88d1k82a3
not modelled 6.2 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
89d1dl6a_
not modelled 6.2 25 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
90c3iz6P_
not modelled 6.2 40 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
91d2apob1
not modelled 6.1 23 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
92d2dara1
not modelled 5.8 29 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
93d1hq0a_
not modelled 5.8 19 Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:Type 1 cytotoxic necrotizing factor, catalytic domain
94c2xznQ_
not modelled 5.6 40 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
95d1uika1
not modelled 5.5 23 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
96c3dkqB_
not modelled 5.5 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634;
PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution
97d2ey4e1
not modelled 5.3 23 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
98c2e5qA_
not modelled 5.2 12 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0