Phyre 2 Results for P0ABW0

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0ABW0
Date | Thu Jan 5 11:16:30 GMT 2012
Unique Job ID | cc81a9c98213d71c

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template d1fqta_
Top template information
Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
105 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | R | I | Y | A | C | P | V | A | D | V | P | E | G | E | A | L | R | I | D | T | S | P | V | I | A | L | F | N | V | G | G | E | F | Y | A | I | N | D | R | C | S | H | G | N | A | S | M | S | E | G | Y | L | E | D | D | A | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | .
Sequence |  | E | C | P | L | H | A | A | S | F | C | L | K | T | G | K | A | L | C | L | P | A | T | D | P | L | T | T | Y | P | V | H | V | E | G | G | D | I | F | I | D | L | P | E | A | Q | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1fqta_ |

### PDB 1fqt chain A

Region: 1 - 105
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 39%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2
2 |
| c2qpzA_ |

### PDB 2qpz chain A

Region: 1 - 102
Aligned: 101
Modelled: 102
Confidence: 100.0%
Identity: 45%
PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin

Phyre2
3 |
| c2i7fB_ |

### PDB 2i7f chain B

Region: 2 - 102
Aligned: 100
Modelled: 101
Confidence: 100.0%
Identity: 40%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin

Phyre2
4 |
| c2de7E_ |

### PDB 2de7 chain E

Region: 2 - 104
Aligned: 102
Modelled: 103
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2
5 |
| c3gceA_ |

### PDB 3gce chain A

Region: 2 - 101
Aligned: 100
Modelled: 100
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177

Phyre2
6 |
| d3c0da1 |

### PDB 3c0d chain A domain 1

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 100.0%
Identity: 25%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2
7 |
| c3dqyA_ |

### PDB 3dqy chain A

Region: 2 - 105
Aligned: 102
Modelled: 104
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin

Phyre2
8 |
| d2de6a1 |

### PDB 2de6 chain A domain 1

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 24%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
9 |
| d1z01a1 |

### PDB 1z01 chain A domain 1

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 31%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2
10 |
| d1vm9a_ |

### PDB 1vm9 chain A

Region: 2 - 106
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 27%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2
11 |
| c3d89A_ |

### PDB 3d89 chain A

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 22%
PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus

Phyre2
12 |
| d2jzaa1 |

### PDB 2jza chain A domain 1

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 25%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2
13 |
| c2de7B_ |

### PDB 2de7 chain B

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 25%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2
14 |
| c3gkqB_ |

### PDB 3gkq chain B

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1

Phyre2
15 |
| d2jo6a1 |

### PDB 2jo6 chain A domain 1

Region: 1 - 100
Aligned: 99
Modelled: 100
Confidence: 99.9%
Identity: 17%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2
16 |
| c3gcfC_ |

### PDB 3gcf chain C

Region: 3 - 106
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 28%
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177

Phyre2
17 |
| c2zylA_ |

### PDB 2zyl chain A

Region: 2 - 106
Aligned: 103
Modelled: 105
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis

Phyre2
18 |
| c1z01D_ |

### PDB 1z01 chain D

Region: 3 - 105
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 32%
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction

Phyre2
19 |
| c3n0qA_ |

### PDB 3n0q chain A

Region: 2 - 106
Aligned: 104
Modelled: 105
Confidence: 99.9%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution

Phyre2
20 |
| c3gteB_ |

### PDB 3gte chain B

Region: 3 - 106
Aligned: 102
Modelled: 104
Confidence: 99.9%
Identity: 23%
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1fqta_ |
|  | 100.0 | 39 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
2 | c2qpzA_ |
|  | 100.0 | 45 | PDB header:metal binding protein Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
3 | c2i7fB_ |
|  | 100.0 | 40 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin component of dioxygenase; PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
4 | c2de7E_ |
|  | 100.0 | 34 | PDB header:oxidoreductase Chain: E: PDB Molecule:ferredoxin component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
5 | c3gceA_ |
|  | 100.0 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a- PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
6 | d3c0da1 |
|  | 100.0 | 25 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
7 | c3dqyA_ |
|  | 100.0 | 39 | PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
8 | d2de6a1 |
|  | 99.9 | 24 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
9 | d1z01a1 |
|  | 99.9 | 31 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
10 | d1vm9a_ |
|  | 99.9 | 27 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
11 | c3d89A_ |
|  | 99.9 | 22 | PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
12 | d2jzaa1 |
|  | 99.9 | 25 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
13 | c2de7B_ |
|  | 99.9 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
14 | c3gkqB_ |
|  | 99.9 | 28 | PDB header:oxidoreductase Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1
15 | d2jo6a1 |
|  | 99.9 | 17 | Fold:ISP domain Superfamily:ISP domain Family:NirD-like
16 | c3gcfC_ |
|  | 99.9 | 28 | PDB header:oxidoreductase Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a- PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
17 | c2zylA_ |
|  | 99.9 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:possible oxidoreductase; PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
18 | c1z01D_ |
|  | 99.9 | 32 | PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction
19 | c3n0qA_ |
|  | 99.9 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase; PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
20 | c3gteB_ |
|  | 99.9 | 23 | PDB header:electron transport, oxidoreductase Chain: B: PDB Molecule:ddmc; PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron
21 | d1ulia1 |
| not modelled | 99.9 | 16 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
22 | d1wqla1 |
| not modelled | 99.9 | 14 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
23 | d2bmoa1 |
| not modelled | 99.9 | 14 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
24 | c1uljA_ |
| not modelled | 99.9 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:biphenyl dioxygenase large subunit; PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
25 | d2b1xa1 |
| not modelled | 99.9 | 23 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
26 | c1wqlA_ |
| not modelled | 99.9 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase; PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
27 | d1o7na1 |
| not modelled | 99.9 | 18 | Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain
28 | d1g8kb_ |
| not modelled | 99.9 | 22 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
29 | c2gbxE_ |
| not modelled | 99.9 | 19 | PDB header:oxidoreductase Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
30 | c2hmnA_ |
| not modelled | 99.9 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit; PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
31 | c2b1xE_ |
| not modelled | 99.9 | 19 | PDB header:oxidoreductase Chain: E: PDB Molecule:naphthalene dioxygenase large subunit; PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
32 | d3cx5e1 |
| not modelled | 99.9 | 16 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
33 | d1rfsa_ |
| not modelled | 99.8 | 17 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
34 | d1q90c_ |
| not modelled | 99.8 | 19 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
35 | d1riea_ |
| not modelled | 99.8 | 19 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
36 | d1nyka_ |
| not modelled | 99.8 | 19 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
37 | d2e74d1 |
| not modelled | 99.8 | 20 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
38 | c2e76D_ |
| not modelled | 99.7 | 19 | PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
39 | c1p84E_ |
| not modelled | 99.7 | 18 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
40 | c2nvgA_ |
| not modelled | 99.7 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit; PDBTitle: soluble domain of rieske iron sulfur protein.
41 | c2fyuE_ |
| not modelled | 99.7 | 18 | PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
42 | d1jm1a_ |
| not modelled | 99.6 | 28 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
43 | c2fynO_ |
| not modelled | 99.6 | 20 | PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
44 | d2hf1a1 |
| not modelled | 69.9 | 14 | Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like
45 | d2jnya1 |
| not modelled | 69.8 | 14 | Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like
46 | c2jr6A_ |
| not modelled | 62.9 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
47 | d2pk7a1 |
| not modelled | 62.9 | 9 | Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like
48 | c2js4A_ |
| not modelled | 60.6 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
49 | c2kpiA_ |
| not modelled | 56.1 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
50 | c2w3nA_ |
| not modelled | 36.3 | 29 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
51 | c3lasA_ |
| not modelled | 32.8 | 25 | PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
52 | d1ddza2 |
| not modelled | 30.5 | 14 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
53 | c1ylkA_ |
| not modelled | 28.9 | 31 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322; PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
54 | c1ddzA_ |
| not modelled | 28.9 | 18 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
55 | c3ucoB_ |
| not modelled | 28.8 | 25 | PDB header:lyase/lyase inhibitor Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
56 | c3eyxB_ |
| not modelled | 28.7 | 9 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
57 | c2a8cE_ |
| not modelled | 27.5 | 15 | PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase
58 | d1ekja_ |
| not modelled | 26.5 | 8 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
59 | d1ddza1 |
| not modelled | 26.4 | 18 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
60 | c2a5vB_ |
| not modelled | 24.9 | 23 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
61 | d1i6pa_ |
| not modelled | 24.8 | 14 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
62 | d1g5ca_ |
| not modelled | 23.2 | 21 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
63 | c3eoiB_ |
| not modelled | 12.6 | 9 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:pilm; PDBTitle: crystal structure of putative protein pilm from escherichia coli b7a
64 | c2k5rA_ |
| not modelled | 12.6 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein xf2673; PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
65 | c2xk0A_ |
| not modelled | 12.0 | 17 | PDB header:transcription Chain: A: PDB Molecule:polycomb protein pcl; PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
66 | d2j7ja2 |
| not modelled | 11.0 | 33 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
67 | d1ubdc1 |
| not modelled | 10.6 | 33 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
68 | d1r2za3 |
| not modelled | 10.2 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
69 | c3hg9B_ |
| not modelled | 10.1 | 5 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:pilm; PDBTitle: crystal structure of putative pilm protein from pseudomonas aeruginosa2 2192
70 | d1l1ta3 |
| not modelled | 8.8 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
71 | d1tdza3 |
| not modelled | 8.8 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
72 | d2c42a2 |
| not modelled | 8.1 | 8 | Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module
73 | d1h7va_ |
| not modelled | 7.9 | 15 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
74 | d1e44b_ |
| not modelled | 7.6 | 38 | Fold:Ribonuclease domain of colicin E3 Superfamily:Ribonuclease domain of colicin E3 Family:Ribonuclease domain of colicin E3
75 | c2w8xB_ |
| not modelled | 7.6 | 15 | PDB header:membrane protein Chain: B: PDB Molecule:ion-channel modulator raklp; PDBTitle: structure of the tick ion-channel modulator ra-klp
76 | d2aqaa1 |
| not modelled | 7.5 | 17 | Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like
77 | c2opfA_ |
| not modelled | 7.5 | 18 | PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
78 | c3izbP_ |
| not modelled | 7.3 | 40 | PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
79 | d1dgwa_ |
| not modelled | 7.2 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
80 | c2kn9A_ |
| not modelled | 7.2 | 15 | PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
81 | c2j6aA_ |
| not modelled | 7.1 | 17 | PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
82 | c2eqjA_ |
| not modelled | 6.9 | 17 | PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
83 | d1ee8a3 |
| not modelled | 6.6 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
84 | c3e59A_ |
| not modelled | 6.5 | 11 | PDB header:transferase Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca; PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa
85 | d1ibia1 |
| not modelled | 6.5 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
86 | d1k3xa3 |
| not modelled | 6.4 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
87 | c2e5pA_ |
| not modelled | 6.3 | 17 | PDB header:transcription Chain: A: PDB Molecule:phd finger protein 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
88 | d1k82a3 |
| not modelled | 6.2 | 18 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
89 | d1dl6a_ |
| not modelled | 6.2 | 25 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain
90 | c3iz6P_ |
| not modelled | 6.2 | 40 | PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
91 | d2apob1 |
| not modelled | 6.1 | 23 | Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like
92 | d2dara1 |
| not modelled | 5.8 | 29 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
93 | d1hq0a_ |
| not modelled | 5.8 | 19 | Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:Type 1 cytotoxic necrotizing factor, catalytic domain
94 | c2xznQ_ |
| not modelled | 5.6 | 40 | PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
95 | d1uika1 |
| not modelled | 5.5 | 23 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
96 | c3dkqB_ |
| not modelled | 5.5 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution
97 | d2ey4e1 |
| not modelled | 5.3 | 23 | Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like
98 | c2e5qA_ |
| not modelled | 5.2 | 12 | PDB header:transcription Chain: A: PDB Molecule:phd finger protein 19; PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0