Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	A	K	I	R	R	D	D	E	V	I	V	L	T	G	K	D	K	G	K	R	G	K	V	K	N	V	L	S	S	G	K	V	I	V	E	G	I	N	L	V	K	K	H	Q	K	P	V	P	A	L	N	Q	P	G	G	I	V	E
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?																																									?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Sequence		K	E	A	A	I	Q	V	S	N	V	A	I	F	N	A	A	T	G	K	A	D	R	V	G	F	R	F	E	D	G	K	K	V	R	F	F	K	S	N	S	E	T	I	K
Secondary structure
SS confidence
Disorder			?																			?																	?	?	?	?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gyc chain S domain 1 Region: 4 - 102 Aligned: 99 Modelled: 99 Confidence: 100.0% Identity: 100% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 2zjr chain R domain 1 Region: 2 - 102 Aligned: 100 Modelled: 101 Confidence: 100.0% Identity: 43% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 3bbo chain W Region: 2 - 103 Aligned: 101 Modelled: 102 Confidence: 100.0% Identity: 34% PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2j01 chain Y domain 1 Region: 1 - 98 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 43% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 2ftc chain N Region: 8 - 103 Aligned: 94 Modelled: 96 Confidence: 100.0% Identity: 30% PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 3iz5 chain Y Region: 3 - 99 Aligned: 83 Modelled: 97 Confidence: 99.9% Identity: 28% PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1vqo chain T domain 1 Region: 3 - 85 Aligned: 71 Modelled: 71 Confidence: 99.9% Identity: 27% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 4a1c chain S Region: 2 - 82 Aligned: 69 Modelled: 69 Confidence: 99.9% Identity: 32% PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 1s1i chain U Region: 3 - 83 Aligned: 69 Modelled: 69 Confidence: 99.8% Identity: 29% PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 2zkr chain T Region: 2 - 74 Aligned: 61 Modelled: 73 Confidence: 99.2% Identity: 33% PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2kvq chain G Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 96.2% Identity: 19% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 2jvv chain A Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 96.2% Identity: 19% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 1npp chain A domain 2 Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 96.0% Identity: 25% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 3p8b chain B Region: 5 - 74 Aligned: 54 Modelled: 54 Confidence: 95.7% Identity: 28% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 1nz9 chain A Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 95.5% Identity: 31% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2joy chain A domain 1 Region: 1 - 46 Aligned: 45 Modelled: 46 Confidence: 95.3% Identity: 24% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal protein L14e Phyre2 PDB 2do3 chain A domain 1 Region: 4 - 36 Aligned: 32 Modelled: 33 Confidence: 95.0% Identity: 28% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 2ckk chain A Region: 6 - 37 Aligned: 32 Modelled: 32 Confidence: 94.0% Identity: 16% PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. Phyre2 PDB 2xhc chain A Region: 5 - 37 Aligned: 33 Modelled: 33 Confidence: 93.0% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) Phyre2 PDB 1m1g chain B Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 92.3% Identity: 25% PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Phyre2 1 d2gycs1 2 d2zjrr1 3 c3bboW_ 4 d2j01y1 5 c2ftcN_ 6 c3iz5Y_ 7 d1vqot1 8 c4a1cS_ 9 c1s1iU_ 10 c2zkrt_ 11 c2kvqG_ 12 c2jvvA_ 13 d1nppa2 14 c3p8bB_ 15 d1nz9a_ 16 d2joya1 17 d2do3a1 18 c2ckkA_ 19 c2xhcA_ 20 c1m1gB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gycs1 100.0 100 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 2 d2zjrr1 100.0 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 3 c3bboW_ 100.0 34 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 4 d2j01y1 100.0 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 5 c2ftcN_ 100.0 30 PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 6 c3iz5Y_ 99.9 28 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 7 d1vqot1 99.9 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 8 c4a1cS_ 99.9 32 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 9 c1s1iU_ 99.8 29 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 10 c2zkrt_ 99.2 33 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 11 c2kvqG_ 96.2 19 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 12 c2jvvA_ 96.2 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 13 d1nppa2 96.0 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 14 c3p8bB_ 95.7 28 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1nz9a_ 95.5 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 16 d2joya1 95.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 17 d2do3a1 95.0 28 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 18 c2ckkA_ 94.0 16 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 19 c2xhcA_ 93.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 20 c1m1gB_ 92.3 25 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 21 c4a19F_ not modelled 91.0 26 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 22 c3izcN_ not modelled 90.7 23 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 23 c3iz5N_ not modelled 90.3 23 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 24 c3izcG_ not modelled 89.9 24 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 25 c2e6zA_ not modelled 87.6 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 26 c4a1dE_ not modelled 83.9 35 PDB header:ribosome Chain: E: PDB Molecule:rpl6; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 27 c4a18N_ not modelled 82.2 30 PDB header:ribosome Chain: N: PDB Molecule:rpl27; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 28 c2e70A_ not modelled 78.6 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 29 c3iz5G_ not modelled 74.8 32 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 30 c2xzmW_ not modelled 56.5 16 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 31 c3kbgA_ not modelled 49.5 12 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 32 c3iz6D_ not modelled 44.8 29 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 33 d1vhka1 not modelled 43.3 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 34 c3izca_ not modelled 42.1 25 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 35 c4a1aP_ not modelled 35.8 32 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 36 c3iz5a_ not modelled 35.4 28 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 37 d1nxza1 not modelled 30.1 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 38 c2dxcG_ not modelled 28.5 22 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 39 d1o12a1 not modelled 24.8 29 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 40 c3k7aM_ not modelled 22.8 15 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 41 d1ng2a2 not modelled 22.8 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 c2kmmA_ not modelled 20.7 28 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 43 c3qz9D_ not modelled 20.3 33 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 44 d1wlpb2 not modelled 20.1 30 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 45 c3izbD_ not modelled 19.3 23 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 46 c3gqhB_ not modelled 19.3 19 PDB header:viral protein Chain: B: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 c-terminal fragment 47 d1pfta_ not modelled 18.9 14 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 48 d1tova_ not modelled 18.9 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 49 d1jb0e_ not modelled 18.7 23 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 50 d1dl6a_ not modelled 18.3 3 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 51 d1psea_ not modelled 18.0 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 52 c2k6dA_ not modelled 16.9 30 PDB header:sh3 domain/ubiquitin Chain: A: PDB Molecule:sh3 domain-containing kinase-binding protein 1; PDBTitle: cin85 sh3-c domain in complex with ubiquitin 53 d1ugpb_ not modelled 16.7 30 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 54 d1p7ba1 not modelled 15.1 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 55 d1qp3a_ not modelled 14.5 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 56 c3dclC_ not modelled 14.4 40 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 57 d1k4us_ not modelled 14.4 35 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 58 c2ed0A_ not modelled 14.2 17 PDB header:signaling protein Chain: A: PDB Molecule:abl interactor 2; PDBTitle: solution structure of the sh3 domain of abl interactor 22 (abelson interactor 2) 59 c2eyxA_ not modelled 13.6 30 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 60 c2gb5B_ not modelled 13.5 8 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 61 d1v29b_ not modelled 13.3 11 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 62 d2dk3a1 not modelled 12.8 38 Fold:SH3-like barrel Superfamily:Mib/herc2 domain-like Family:Mib/herc2 domain 63 c2l0aA_ not modelled 12.4 17 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 1; PDBTitle: solution nmr structure of signal transducing adapter molecule 1 stam-12 from homo sapiens, northeast structural genomics consortium target3 hr4479e 64 d2cona1 not modelled 12.4 25 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 65 d2c78a1 not modelled 12.2 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 66 c2drmB_ not modelled 11.8 39 PDB header:contractile protein Chain: B: PDB Molecule:acanthamoeba myosin ib; PDBTitle: acanthamoeba myosin i sh3 domain bound to acan125 67 c2dnuA_ not modelled 11.8 22 PDB header:structural genomics, structural protein Chain: A: PDB Molecule:sh3 multiple domains 1; PDBTitle: solution structure of rsgi ruh-061, a sh3 domain from human 68 c2xzm1_ not modelled 11.8 31 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 69 d1xl4a1 not modelled 11.7 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 70 d1ne3a_ not modelled 11.2 38 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 71 d1nlqa_ not modelled 11.1 9 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Nucleoplasmin-like core domain Family:Nucleoplasmin-like core domain 72 d1ppya_ not modelled 10.9 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 73 d1ny4a_ not modelled 10.8 46 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 d1gria2 not modelled 10.8 30 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 75 d1ka5a_ not modelled 10.7 28 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 76 c2csqA_ not modelled 10.7 14 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:rim binding protein 2; PDBTitle: solution structure of the second sh3 domain of human rim-2 binding protein 2 77 c1x2qA_ not modelled 10.6 22 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 2; PDBTitle: solution structure of the sh3 domain of the signal2 transducing adaptor molecule 2 78 d2hpra_ not modelled 10.5 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 79 c1wi7A_ not modelled 10.3 26 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: solution structure of the sh3 domain of sh3-domain kinase2 binding protein 1 80 c3t07D_ not modelled 10.3 19 PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid 81 c1u4fD_ not modelled 10.1 25 PDB header:allergen Chain: D: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: crystal structure of cytoplasmic domains of irk1 (kir2.1)2 channel 82 d2b1ya1 not modelled 10.0 26 Fold:Atu1913-like Superfamily:Atu1913-like Family:Atu1913-like 83 c2bz8B_ not modelled 10.0 22 PDB header:sh3 domain Chain: B: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: n-terminal sh3 domain of cin85 bound to cbl-b peptide 84 d1n9pa_ not modelled 9.8 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 85 d1mxaa2 not modelled 9.8 40 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 86 d1cm3a_ not modelled 9.7 17 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 87 c3ihsB_ not modelled 9.6 22 PDB header:transport protein Chain: B: PDB Molecule:phosphocarrier protein hpr; PDBTitle: crystal structure of a phosphocarrier protein hpr from2 bacillus anthracis str. ames 88 d2nzul1 not modelled 9.5 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 89 c3iz5U_ not modelled 9.5 31 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 90 c1wxbA_ not modelled 9.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:epidermal growth factor receptor pathway PDBTitle: solution structure of the sh3 domain from human epidermal2 growth factor receptor pathway substrate 8-like protein 91 c2zkrq_ not modelled 9.1 36 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 d1uhfa_ not modelled 8.9 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 93 c2bzxA_ not modelled 8.8 22 PDB header:sh3 domain Chain: A: PDB Molecule:crk-like protein; PDBTitle: atomic model of crkl-sh3c monomer 94 d1ug1a_ not modelled 8.8 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 95 c2djqA_ not modelled 8.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: the solution structure of the first sh3 domain of mouse sh32 domain containing ring finger 2 96 d1ptfa_ not modelled 8.7 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 97 d1wlpb1 not modelled 8.6 13 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 98 c2wh7A_ not modelled 8.3 26 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 99 c2e4fA_ not modelled 8.2 18 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0