 |
| Job Description | P60624 | | Confidence | 22.83% | Date | Thu Jan 5 12:06:57 GMT 2012 |
| Rank | 40 | Aligned Residues | 34 |
| % Identity | 15% | Template | c3k7aM_ |
| PDB info |
PDB header:transcription | Chain: M: PDB Molecule:transcription initiation factor iib; |
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
|
| Resolution | 3.80 Å |
|
|   |   |
69 | 70 | . | . | . | . | . | . | . | . | |
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
N | V | A | I | F | N | A | A | T | G | . |
K | A | D | R | V | G | F | R | F | E | D | G | K | K | V | R | F | F | K | S | N | S | E | T | I | K |
| Query Conservation |   |
|
|   |
|
|
|
|   |   |   | . |
|   |
|
|
|   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|
|
|   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |
|
|   |
|
|   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |
| . | . |
|   |   |
|
|   |
|
|   |
| Template Sequence |   |
N | I | V | L | T | C | P | E | C | K | V | Y | P | P | K | I | V | E | R | F | S | E | G | D | V | V | . |
. |
C | A | L | C | G | L | V | L | S |
| Template Known Secondary structure |   |
|
|
|
|
|
| S | T | T |
|
| S |
|
|
|
|
|
|
| S | S | S |
| S |
|
| . | . |
| S | S | S |
|
|
|
|
|
| Template Predicted Secondary structure |   |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  | . | . |  |
|
|
|
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
. | . | . | . | . | 50 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|