Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	E	K	D	Y	V	V	I	I	G	S	A	N	I	D	V	A	G	Y	S	H	E	S	L	N	Y	A	D	S	N	P	G	K	I	K	F	T	P	G	G	V	G	R	N	I	A	Q	N	L	A	L	L	G	N	K	A	W	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	V	G	S	D	F	Y	G	Q	S	L	L	T	Q	T	N	Q	S	G	V	Y	V	D	K	C	L	I	V	P	G	E	N	T	S	S	Y	L	S	L	L	D	N	T	G	E	M	L	V	A	I	N	D	M	N	I	S	N	A	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	A	E	Y	L	A	Q	H	G	E	F	I	Q	R	A	K	V	I	V	A	D	C	N	I	S	E	E	A	L	A	W	I	L	D	N	A	A	N	V	P	V	F	V	D	P	V	S	A	W	K	C	V	K	V	R	D	R	L	N	Q
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	H	T	L	K	P	N	R	L	E	A	E	T	L	S	G	I	A	L	S	G	R	E	D	V	A	K	V	A	A	W	F	H	Q	H	G	L	N	R	L	V	L	S	M	G	G	D	G	V	Y	Y	S	D	I	S	G	E	S	G	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	A	P	I	K	T	N	V	I	N	V	T	G	A	G	D	A	M	M	A	G	L	A	S	C	W	V	D	G	M	P	F	A	E	S	V	R	F	A	Q	G	C	S	S	M	A	L	S	C	E	Y	T	N	N	P	D	L	S	I	A
Secondary structure
SS confidence
Disorder																																																?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.
Sequence		N	V	I	S	L	V	E	N	A	E	C	L	N
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kzh chain A Region: 2 - 311 Aligned: 309 Modelled: 310 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 1rkd chain A Region: 5 - 310 Aligned: 304 Modelled: 306 Confidence: 100.0% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 5 - 306 Aligned: 293 Modelled: 302 Confidence: 100.0% Identity: 27% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 2c49 chain A Region: 2 - 310 Aligned: 295 Modelled: 303 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 3pl2 chain D Region: 5 - 306 Aligned: 293 Modelled: 302 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2rbc chain A Region: 4 - 310 Aligned: 300 Modelled: 307 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2pkk chain A Region: 2 - 308 Aligned: 296 Modelled: 307 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 2fv7 chain A domain 1 Region: 5 - 306 Aligned: 300 Modelled: 302 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3in1 chain A Region: 6 - 310 Aligned: 298 Modelled: 300 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 2qcv chain A Region: 1 - 313 Aligned: 302 Modelled: 313 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 3b1q chain D Region: 7 - 308 Aligned: 287 Modelled: 297 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 1vm7 chain A Region: 1 - 308 Aligned: 296 Modelled: 305 Confidence: 100.0% Identity: 20% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3cqd chain B Region: 5 - 308 Aligned: 299 Modelled: 304 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 3go6 chain B Region: 5 - 309 Aligned: 278 Modelled: 286 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 3iq0 chain B Region: 5 - 309 Aligned: 295 Modelled: 302 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 2jg1 chain C Region: 3 - 311 Aligned: 301 Modelled: 309 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 2f02 chain A domain 1 Region: 7 - 311 Aligned: 298 Modelled: 302 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1v19 chain A Region: 5 - 306 Aligned: 285 Modelled: 302 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2var chain B Region: 6 - 310 Aligned: 293 Modelled: 305 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate Phyre2 PDB 3loo chain C Region: 1 - 288 Aligned: 282 Modelled: 288 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate Phyre2 1 c3kzhA_ 2 d1rkda_ 3 c2nwhA_ 4 c2c49A_ 5 c3pl2D_ 6 c2rbcA_ 7 c2pkkA_ 8 d2fv7a1 9 c3in1A_ 10 c2qcvA_ 11 c3b1qD_ 12 d1vm7a_ 13 c3cqdB_ 14 c3go6B_ 15 c3iq0B_ 16 c2jg1C_ 17 d2f02a1 18 d1v19a_ 19 c2varB_ 20 c3looC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kzhA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 2 d1rkda_ 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 3 c2nwhA_ 100.0 27 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 4 c2c49A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 5 c3pl2D_ 100.0 18 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 6 c2rbcA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 7 c2pkkA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 8 d2fv7a1 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 9 c3in1A_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 10 c2qcvA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 11 c3b1qD_ 100.0 19 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 12 d1vm7a_ 100.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 13 c3cqdB_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 14 c3go6B_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 15 c3iq0B_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 16 c2jg1C_ 100.0 17 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 17 d2f02a1 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 18 d1v19a_ 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 19 c2varB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 20 c3looC_ 100.0 15 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 21 c3i3yB_ not modelled 100.0 17 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 22 d2abqa1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 23 d1bx4a_ not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 24 c2jg5B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 25 c2xtbA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 26 d2dcna1 not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 27 c3b3lC_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 28 d2afba1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 29 c3ktnA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 30 d2ajra1 not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 31 d2absa1 not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 32 c2absA_ not modelled 100.0 18 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 33 c3bf5A_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 34 c3gbuD_ not modelled 100.0 18 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 35 c3kd6B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 36 d1tyya_ not modelled 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 37 c3lhxA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 38 c2qhpA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 39 c3julA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 40 c3lkiA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 41 c1tz6B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 42 c3hj6B_ not modelled 100.0 20 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 43 d1vk4a_ not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 44 c2ddmA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c3mbjA_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 46 c2i5bC_ not modelled 99.7 21 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 47 d1vi9a_ not modelled 99.7 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 48 c3ibqA_ not modelled 99.7 18 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 49 d1ub0a_ not modelled 99.7 25 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 50 d1lhpa_ not modelled 99.6 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 c3rm5B_ not modelled 99.5 16 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 52 d1jxha_ not modelled 99.5 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 53 c3dzvB_ not modelled 99.2 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 54 d1v8aa_ not modelled 99.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 55 d2ax3a1 not modelled 99.0 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 56 d1kyha_ not modelled 98.9 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 57 c2ax3A_ not modelled 98.7 13 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 58 c2r3bA_ not modelled 98.6 11 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 59 d1ekqa_ not modelled 98.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 60 c3k5wA_ not modelled 98.5 16 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 61 c3bgkA_ not modelled 98.3 13 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 62 c3nm3D_ not modelled 98.2 15 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 63 d1l2la_ not modelled 98.0 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 d1gc5a_ not modelled 97.8 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 65 d1u2xa_ not modelled 97.4 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 c3drwA_ not modelled 97.3 17 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 67 d1ua4a_ not modelled 97.1 10 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 68 c3kljA_ not modelled 68.5 26 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum 69 c3lzxB_ not modelled 63.7 39 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii) 70 c2hkoA_ not modelled 61.5 41 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 71 c1c0iA_ not modelled 59.3 39 PDB header:oxidoreductase Chain: A: PDB Molecule:d-amino acid oxidase; PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules 72 c2v1dA_ not modelled 54.4 41 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition 73 c2xagA_ not modelled 54.4 41 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 74 c3crcB_ not modelled 52.7 9 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 75 d1p3da1 not modelled 51.4 33 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 76 d2dw4a2 not modelled 48.4 39 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 77 c1v59B_ not modelled 41.1 39 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 78 d1gega_ not modelled 40.7 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 79 d1c0pa1 not modelled 35.9 39 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 80 d1trba2 not modelled 35.7 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 81 c1ps9A_ not modelled 35.5 38 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 82 c1djnB_ not modelled 35.0 41 PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) 83 d1xgka_ not modelled 34.6 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 84 c3k5iB_ not modelled 34.1 29 PDB header:lyase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-3 aminoimadazole ribonucleotide 85 c3allA_ not modelled 33.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a 86 c3gucB_ not modelled 33.2 45 PDB header:transferase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme 5; PDBTitle: human ubiquitin-activating enzyme 5 in complex with amppnp 87 c2f00A_ not modelled 33.1 33 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 88 c1vdcA_ not modelled 32.2 33 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase 89 d1nyta1 not modelled 31.0 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 90 c2e1mA_ not modelled 30.8 28 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 91 c3enkB_ not modelled 30.7 32 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei 92 d1ml4a2 not modelled 30.5 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 93 d1q5qa_ not modelled 30.4 12 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 94 c2ppvA_ not modelled 27.9 33 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution 95 d1pzga1 not modelled 26.2 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 96 d2hzba1 not modelled 25.9 33 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 97 d1hdoa_ not modelled 25.2 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 98 c3d8xB_ not modelled 25.2 45 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 99 d1v59a1 not modelled 24.9 39 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 100 c1f8sA_ not modelled 24.8 44 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 101 c2b9yA_ not modelled 24.6 30 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 102 d1uz5a3 not modelled 24.5 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 103 d1seza1 not modelled 24.3 38 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 104 c3d3jA_ not modelled 24.1 15 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 105 c3nlcA_ not modelled 24.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 106 c3lxdA_ not modelled 24.1 42 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans 107 c2fu3A_ not modelled 23.8 15 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 108 d1djqa3 not modelled 23.2 41 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 109 c1y56B_ not modelled 22.7 45 PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii 110 c3rhaA_ not modelled 22.4 42 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 111 c2nqqA_ not modelled 22.2 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 112 c1q5rD_ not modelled 22.0 12 PDB header:hydrolase Chain: D: PDB Molecule:proteasome alpha-type subunit 1; PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides 113 c3pl5A_ not modelled 21.7 10 PDB header:lipid binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: fatty acid binding protein 114 c1w7pD_ not modelled 21.3 12 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 115 d1j6ua1 not modelled 21.1 16 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 116 c2wfbA_ not modelled 20.8 33 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein orp; PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas 117 d1wu2a3 not modelled 20.7 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 118 d1trba1 not modelled 20.6 35 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 119 d2ftsa3 not modelled 20.5 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 120 c2vdcI_ not modelled 20.4 37 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0