Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	R	D	A	I	N	H	I	R	Q	F	G	G	R	L	D	R	F	R	K	S	V	G	G	S	G	D	G	G	R	N	A	P	K	R	A	K	S	S	P	K	P	V	N	R	K	T	N	V	F	N	E	Q	V	R	Y	A	F
Secondary structure
SS confidence
Disorder		?	?	?	?												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	G	A	L	Q	D	L	K	S	K	P	F	A	T	F	L	T	V	M	V	I	A	I	S	L	T	L	P	S	V	C	Y	M	V	Y	K	N	V	N	Q	A	A	T	Q	Y	Y	P	S	P	Q	I	T	V	Y	L	Q	K	T	L	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	D	A	A	A	G	V	V	A	Q	L	Q	A	E	Q	G	V	E	K	V	N	Y	L	S	R	E	D	A	L	G	E	F	R	N	W	S	G	F	G	G	A	L	D	M	L	E	E	N	P	L	P	A	V	A	V	V	I	P	K	L
Secondary structure
SS confidence
Disorder																																												?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	F	Q	G	T	E	S	L	N	T	L	R	D	R	I	T	Q	I	N	G	I	D	E	V	R	M	D	D	S	W	F	A	R	L	A	A	L	T	G	L	V	G	R	V	S	A	M	I	G	V	L	M	V	A	A	V	F	L	V	I
Secondary structure
SS confidence
Disorder		?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	N	S	V	R	L	S	I	F	A	R	R	D	S	I	N	V	Q	K	L	I	G	A	T	D	G	F	I	L	R	P	F	L	Y	G	G	A	L	L	G	F	S	G	A	L	L	S	L	I	L	S	E	I	L	V	L	R	L	S	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Sequence		A	V	A	E	V	A	Q	V	F	G	T	K	F	D	I	N	G	L	S	F	D	E	C	L	L	L	L	L	V	C	S	M	I	G	W	V	A	A	W	L	A	T	V	Q	H	L	R	H	F	T	P	E
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?		?	?	?		?	?																													?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3k07 chain A Region: 77 - 205 Aligned: 127 Modelled: 129 Confidence: 94.9% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa Phyre2 PDB 1oy8 chain A Region: 77 - 205 Aligned: 128 Modelled: 129 Confidence: 90.1% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump Phyre2 PDB 2cyy chain A domain 2 Region: 110 - 205 Aligned: 69 Modelled: 69 Confidence: 78.2% Identity: 23% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2cg4 chain A domain 2 Region: 110 - 205 Aligned: 69 Modelled: 71 Confidence: 77.9% Identity: 19% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2e1a chain D Region: 111 - 205 Aligned: 68 Modelled: 70 Confidence: 73.5% Identity: 19% PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 Phyre2 PDB 2zbc chain H Region: 112 - 205 Aligned: 67 Modelled: 69 Confidence: 64.2% Identity: 19% PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. Phyre2 PDB 3iou chain B Region: 107 - 194 Aligned: 71 Modelled: 88 Confidence: 59.5% Identity: 11% PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 Phyre2 PDB 2e1c chain A Region: 111 - 205 Aligned: 68 Modelled: 74 Confidence: 55.4% Identity: 18% PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Phyre2 PDB 1tke chain A Region: 82 - 154 Aligned: 73 Modelled: 73 Confidence: 53.1% Identity: 14% PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine Phyre2 PDB 3py7 chain A Region: 107 - 194 Aligned: 71 Modelled: 88 Confidence: 52.1% Identity: 13% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 2cfx chain A domain 2 Region: 111 - 144 Aligned: 34 Modelled: 34 Confidence: 52.0% Identity: 9% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2djw chain F Region: 111 - 144 Aligned: 34 Modelled: 34 Confidence: 51.1% Identity: 12% PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 Phyre2 PDB 3ibw chain A Region: 172 - 205 Aligned: 34 Modelled: 34 Confidence: 47.7% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 1cii chain A Region: 215 - 307 Aligned: 88 Modelled: 93 Confidence: 46.6% Identity: 10% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 2voy chain G Region: 41 - 61 Aligned: 21 Modelled: 21 Confidence: 41.5% Identity: 24% PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 1z1z chain A domain 1 Region: 103 - 131 Aligned: 29 Modelled: 29 Confidence: 41.5% Identity: 14% Fold: Phage tail protein-like Superfamily: Phage tail protein-like Family: Lambda phage gpU-like Phyre2 PDB 3dm0 chain A Region: 107 - 194 Aligned: 71 Modelled: 88 Confidence: 40.9% Identity: 11% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 1i1g chain A domain 2 Region: 111 - 144 Aligned: 34 Modelled: 34 Confidence: 40.2% Identity: 12% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 3c4m chain A Region: 107 - 194 Aligned: 71 Modelled: 88 Confidence: 36.8% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) Phyre2 PDB 3ob4 chain A Region: 107 - 176 Aligned: 60 Modelled: 70 Confidence: 32.8% Identity: 13% PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 Phyre2 1 c3k07A_ 2 c1oy8A_ 3 d2cyya2 4 d2cg4a2 5 c2e1aD_ 6 c2zbcH_ 7 c3iouB_ 8 c2e1cA_ 9 c1tkeA_ 10 c3py7A_ 11 d2cfxa2 12 c2djwF_ 13 c3ibwA_ 14 c1ciiA_ 15 c2voyG_ 16 d1z1za1 17 c3dm0A_ 18 d1i1ga2 19 c3c4mA_ 20 c3ob4A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3k07A_ 94.9 13 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 2 c1oy8A_ 90.1 17 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 3 d2cyya2 78.2 23 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 4 d2cg4a2 77.9 19 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 5 c2e1aD_ 73.5 19 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 6 c2zbcH_ 64.2 19 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 7 c3iouB_ 59.5 11 PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 8 c2e1cA_ 55.4 18 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 9 c1tkeA_ 53.1 14 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine 10 c3py7A_ 52.1 13 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 11 d2cfxa2 52.0 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 12 c2djwF_ 51.1 12 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 13 c3ibwA_ 47.7 21 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 14 c1ciiA_ 46.6 10 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 15 c2voyG_ 41.5 24 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 16 d1z1za1 41.5 14 Fold:Phage tail protein-like Superfamily:Phage tail protein-like Family:Lambda phage gpU-like 17 c3dm0A_ 40.9 11 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 18 d1i1ga2 40.2 12 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 19 c3c4mA_ 36.8 13 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 20 c3ob4A_ 32.8 13 PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 21 c1hsjA_ not modelled 32.3 13 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 22 c2nvuB_ not modelled 30.8 11 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 23 c2kjwA_ not modelled 30.8 19 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 24 c3f5fA_ not modelled 30.4 13 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 25 d1vq3a_ not modelled 29.8 23 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 26 d1nnfa_ not modelled 29.3 26 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 27 c3osrA_ not modelled 29.3 13 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 28 d1gtda_ not modelled 29.0 22 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 29 c3bn7A_ not modelled 27.1 19 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution 30 d1xc1a_ not modelled 27.0 23 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 31 d1iwga3 not modelled 26.6 19 Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 32 d1t4aa_ not modelled 25.7 21 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 33 d1laxa_ not modelled 25.5 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 34 d1q35a_ not modelled 25.4 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 35 d1ygya3 not modelled 25.4 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 36 d1v4pa_ not modelled 24.5 18 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:AlaX-like 37 c1svxB_ not modelled 23.3 12 PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein 38 c3bb5B_ not modelled 22.7 11 PDB header:unknown function Chain: B: PDB Molecule:stress responsive alpha-beta protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution 39 d1xvxa_ not modelled 22.7 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 40 c3oaiB_ not modelled 22.1 13 PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero 41 c2zw2B_ not modelled 22.0 14 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 42 c3oq2A_ not modelled 21.9 16 PDB header:immune system Chain: A: PDB Molecule:crispr-associated protein cas2; PDBTitle: structure of a crispr associated protein cas2 from desulfovibrio2 vulgaris 43 c1t3gB_ not modelled 21.8 26 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 44 c1r6zA_ not modelled 21.8 12 PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) 45 c2yx5A_ not modelled 21.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 46 c3h4zC_ not modelled 21.3 13 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 47 c3bdeA_ not modelled 20.6 14 PDB header:unknown function Chain: A: PDB Molecule:mll5499 protein; PDBTitle: crystal structure of a dabb family protein with a ferredoxin-like fold2 (mll5499) from mesorhizobium loti maff303099 at 1.79 a resolution 48 c1mh3A_ not modelled 20.4 14 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 49 d2csfa1 not modelled 20.2 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 50 c2dgbA_ not modelled 20.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 51 d1ryla_ not modelled 19.9 14 Fold:Hypothetical protein yfbM Superfamily:Hypothetical protein yfbM Family:Hypothetical protein yfbM 52 d1sc6a3 not modelled 19.9 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 53 c3bguA_ not modelled 19.8 13 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein of unknown function; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (tfu_0763) from thermobifida fusca yx at 1.50 a resolution 54 d1zpwx1 not modelled 19.7 13 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 55 c3mp6A_ not modelled 19.1 12 PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 56 c2p6tH_ not modelled 17.8 14 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 57 c2qycA_ not modelled 17.7 9 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution 58 d2qfia1 not modelled 17.3 20 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 59 c2ew9A_ not modelled 16.8 18 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 60 c1i1gA_ not modelled 16.4 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 61 c3o3uN_ not modelled 16.3 11 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 62 c3gr1A_ not modelled 15.8 9 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 63 c3k5pA_ not modelled 15.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 64 c3gr0D_ not modelled 15.7 9 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 65 c2yy3B_ not modelled 15.6 6 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-beta; PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii 66 d1kn0a_ not modelled 14.3 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 67 c2pt1A_ not modelled 14.2 15 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803 68 c2rf4B_ not modelled 14.1 11 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 69 d1nyra3 not modelled 14.0 11 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 70 c2pc6C_ not modelled 14.0 16 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 71 c3ftjA_ not modelled 13.7 17 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 72 c2jo1A_ not modelled 13.7 8 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 73 c2vgqA_ not modelled 13.6 15 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 74 c3hzpA_ not modelled 13.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 75 c2jp3A_ not modelled 13.3 13 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 76 c3csgA_ not modelled 13.2 13 PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex 77 d2e74d2 not modelled 13.2 18 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 78 d2rh3a1 not modelled 13.1 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VirC2-like 79 c2f1fA_ not modelled 13.1 19 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 80 c2cfxD_ not modelled 12.9 9 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 81 c1h2iG_ not modelled 12.9 17 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 82 d1tr0a_ not modelled 12.3 3 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Plant stress-induced protein 83 c1nyqA_ not modelled 12.1 13 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 84 d1qupa2 not modelled 12.1 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 85 c1qupA_ not modelled 11.9 11 PDB header:chaperone Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone; PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase 86 c1jk9D_ not modelled 11.7 11 PDB header:oxidoreductase Chain: D: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: heterodimer between h48f-ysod1 and yccs 87 c3d4cA_ not modelled 11.5 13 PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) 88 c2jsxA_ not modelled 11.3 19 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 89 d1r8ja1 not modelled 11.2 11 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 90 c1om8A_ not modelled 11.1 16 PDB header:hydrolase Chain: A: PDB Molecule:serralysin; PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta 91 d1sata2 not modelled 11.1 12 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 92 d1tkea2 not modelled 10.9 18 Fold:RRF/tRNA synthetase additional domain-like Superfamily:ThrRS/AlaRS common domain Family:Threonyl-tRNA synthetase (ThrRS), second 'additional' domain 93 d1y4ta_ not modelled 10.8 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 94 d1hyua3 not modelled 10.7 4 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 95 d1g9ka2 not modelled 10.7 16 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 96 c2z56B_ not modelled 10.6 11 PDB header:hydrolase Chain: B: PDB Molecule:tk-subtilisin; PDBTitle: crystal structure of g56s-propeptide:s324a-subtilisin complex 97 c3lqbA_ not modelled 10.5 3 PDB header:hydrolase Chain: A: PDB Molecule:loc792177 protein; PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio 98 d1v5ib1 not modelled 10.3 17 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 99 d1osce_ not modelled 10.1 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0