Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39371
DateThu Jan 5 12:00:05 GMT 2012
Unique Job IDbec03c59cc67434e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2uvkB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:yjht;
PDBTitle: structure of yjht
Confidence and coverage
Confidence:100.0% Coverage: 95%
349 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAK
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Disorder  ???????



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??
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   .........70.........80.........90.........100.........110.........120
Sequence  DKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL
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Disorder  ????

??
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?
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   .........130.........140.........150.........160.........170.........180
Sequence  MSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA
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   .........190.........200.........210.........220.........230.........240
Sequence  EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE
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?


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   .........250.........260.........270.........280.........290.........300
Sequence  LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL
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   .........310.........320.........330.........340.........350.........360
Sequence  KKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVK
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   ........
Sequence  DNKVTVQN
Secondary structure 


SS confidence 







Disorder  ??



??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2uvk chain B

3D model

Region: 20 - 368
Aligned: 349
Modelled: 349
Confidence: 100.0%
Identity: 99%
PDB header:unknown function
Chain: B: PDB Molecule:yjht;
PDBTitle: structure of yjht

Phyre2

PDB 2zwa chain A

3D model

Region: 24 - 359
Aligned: 279
Modelled: 285
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2;
PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4

Phyre2

PDB 1k3i chain A domain 3

3D model

Region: 12 - 358
Aligned: 322
Modelled: 327
Confidence: 100.0%
Identity: 12%
Fold: 7-bladed beta-propeller
Superfamily: Galactose oxidase, central domain
Family: Galactose oxidase, central domain

Phyre2

PDB 2woz chain A

3D model

Region: 26 - 363
Aligned: 269
Modelled: 289
Confidence: 100.0%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein
PDBTitle: the novel beta-propeller of the btb-kelch protein krp12 provides the binding site for lasp-1 that is necessary for3 pseudopodia extension

Phyre2

PDB 3ii7 chain A

3D model

Region: 38 - 366
Aligned: 265
Modelled: 279
Confidence: 100.0%
Identity: 17%
PDB header:protein binding
Chain: A: PDB Molecule:kelch-like protein 7;
PDBTitle: crystal structure of the kelch domain of human klhl7

Phyre2

PDB 1zgk chain A domain 1

3D model

Region: 37 - 366
Aligned: 267
Modelled: 278
Confidence: 100.0%
Identity: 16%
Fold: 6-bladed beta-propeller
Superfamily: Kelch motif
Family: Kelch motif

Phyre2

PDB 2vz1 chain A

3D model

Region: 3 - 358
Aligned: 293
Modelled: 303
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:galactose oxidase;
PDBTitle: premat-galactose oxidase

Phyre2

PDB 1x2r chain A

3D model

Region: 37 - 363
Aligned: 264
Modelled: 271
Confidence: 100.0%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:kelch-like ech-associated protein 1;
PDBTitle: structural basis for the defects of human lung cancer2 somatic mutations in the repression activity of keap1 on3 nrf2

Phyre2

PDB 2vpj chain A

3D model

Region: 38 - 336
Aligned: 272
Modelled: 282
Confidence: 100.0%
Identity: 15%
PDB header:protein-binding
Chain: A: PDB Molecule:kelch-like protein 12;
PDBTitle: crystal structure of the kelch domain of human klhl12

Phyre2

PDB 2xn4 chain A

3D model

Region: 40 - 363
Aligned: 259
Modelled: 272
Confidence: 100.0%
Identity: 19%
PDB header:structural protein
Chain: A: PDB Molecule:kelch-like protein 2;
PDBTitle: crystal structure of the kelch domain of human klhl2 (mayven)

Phyre2

PDB 3mbr chain X

3D model

Region: 60 - 278
Aligned: 202
Modelled: 219
Confidence: 98.2%
Identity: 13%
PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris

Phyre2

PDB 1kv9 chain A

3D model

Region: 31 - 364
Aligned: 307
Modelled: 330
Confidence: 98.1%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5

Phyre2

PDB 3nol chain A

3D model

Region: 78 - 362
Aligned: 199
Modelled: 224
Confidence: 97.5%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form)

Phyre2

PDB 1qhu chain A domain 1

3D model

Region: 19 - 198
Aligned: 121
Modelled: 139
Confidence: 97.0%
Identity: 18%
Fold: 4-bladed beta-propeller
Superfamily: Hemopexin-like domain
Family: Hemopexin-like domain

Phyre2

PDB 1qhu chain A

3D model

Region: 20 - 280
Aligned: 183
Modelled: 219
Confidence: 96.9%
Identity: 22%
PDB header:binding protein
Chain: A: PDB Molecule:protein (hemopexin);
PDBTitle: mammalian blood serum haemopexin deglycosylated and in2 complex with its ligand haem

Phyre2

PDB 2ad6 chain A domain 1

3D model

Region: 31 - 198
Aligned: 122
Modelled: 123
Confidence: 96.7%
Identity: 14%
Fold: 8-bladed beta-propeller
Superfamily: Quinoprotein alcohol dehydrogenase-like
Family: Quinoprotein alcohol dehydrogenase-like

Phyre2

PDB 3bws chain A

3D model

Region: 9 - 364
Aligned: 281
Modelled: 285
Confidence: 96.6%
Identity: 11%
PDB header:unknown function
Chain: A: PDB Molecule:protein lp49;
PDBTitle: crystal structure of the leptospiral antigen lp49

Phyre2

PDB 3hfq chain B

3D model

Region: 40 - 365
Aligned: 288
Modelled: 296
Confidence: 96.5%
Identity: 11%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein lp_2219;
PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118.

Phyre2

PDB 3ba0 chain A

3D model

Region: 20 - 198
Aligned: 123
Modelled: 138
Confidence: 96.3%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: crystal structure of full-length human mmp-12

Phyre2

PDB 1fbl chain A domain 1

3D model

Region: 23 - 227
Aligned: 149
Modelled: 152
Confidence: 96.2%
Identity: 21%
Fold: 4-bladed beta-propeller
Superfamily: Hemopexin-like domain
Family: Hemopexin-like domain

Phyre2
1

c2uvkB_
2

c2zwaA_
3

d1k3ia3
4

c2wozA_
5

c3ii7A_
6

d1zgka1
7

c2vz1A_
8

c1x2rA_
9

c2vpjA_
10

c2xn4A_
11

c3mbrX_
12

c1kv9A_
13

c3nolA_
14

d1qhua1
15

c1qhuA_
16

d2ad6a1
17

c3bwsA_
18

c3hfqB_
19

c3ba0A_
20

d1fbla1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2uvkB_



100.0 99 PDB header:unknown function
Chain: B: PDB Molecule:yjht;
PDBTitle: structure of yjht
2c2zwaA_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2;
PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4
3d1k3ia3



100.0 12 Fold:7-bladed beta-propeller
Superfamily:Galactose oxidase, central domain
Family:Galactose oxidase, central domain
4c2wozA_



100.0 20 PDB header:protein binding
Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein
PDBTitle: the novel beta-propeller of the btb-kelch protein krp12 provides the binding site for lasp-1 that is necessary for3 pseudopodia extension
5c3ii7A_



100.0 17 PDB header:protein binding
Chain: A: PDB Molecule:kelch-like protein 7;
PDBTitle: crystal structure of the kelch domain of human klhl7
6d1zgka1



100.0 16 Fold:6-bladed beta-propeller
Superfamily:Kelch motif
Family:Kelch motif
7c2vz1A_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:galactose oxidase;
PDBTitle: premat-galactose oxidase
8c1x2rA_



100.0 18 PDB header:transcription
Chain: A: PDB Molecule:kelch-like ech-associated protein 1;
PDBTitle: structural basis for the defects of human lung cancer2 somatic mutations in the repression activity of keap1 on3 nrf2
9c2vpjA_



100.0 15 PDB header:protein-binding
Chain: A: PDB Molecule:kelch-like protein 12;
PDBTitle: crystal structure of the kelch domain of human klhl12
10c2xn4A_



100.0 19 PDB header:structural protein
Chain: A: PDB Molecule:kelch-like protein 2;
PDBTitle: crystal structure of the kelch domain of human klhl2 (mayven)
11c3mbrX_



98.2 13 PDB header:transferase
Chain: X: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris
12c1kv9A_



98.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
13c3nolA_



97.5 17 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form)
14d1qhua1



97.0 18 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
15c1qhuA_



96.9 22 PDB header:binding protein
Chain: A: PDB Molecule:protein (hemopexin);
PDBTitle: mammalian blood serum haemopexin deglycosylated and in2 complex with its ligand haem
16d2ad6a1



96.7 14 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
17c3bwsA_



96.6 11 PDB header:unknown function
Chain: A: PDB Molecule:protein lp49;
PDBTitle: crystal structure of the leptospiral antigen lp49
18c3hfqB_



96.5 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein lp_2219;
PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118.
19c3ba0A_



96.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: crystal structure of full-length human mmp-12
20d1fbla1



96.2 21 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
21d1su3a2



not modelled 96.2 19 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
22c1kb0A_



not modelled 96.1 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
23c1su3A_



not modelled 96.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:interstitial collagenase;
PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action
24c1yiqA_



not modelled 95.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.
25d1gena_



not modelled 95.7 21 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
26d1kb0a2



not modelled 95.6 12 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
27d1itva_



not modelled 95.3 21 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
28c1nnoA_



not modelled 95.1 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
29c3nokB_



not modelled 95.0 15 PDB header:transferase
Chain: B: PDB Molecule:glutaminyl cyclase;
PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase
30d1flga_



not modelled 94.9 16 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
31c1gxdA_



not modelled 94.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:72 kda type iv collagenase;
PDBTitle: prommp-2/timp-2 complex
32c2jxyA_



not modelled 94.6 12 PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: solution structure of the hemopexin-like domain of mmp12
33d1hxna_



not modelled 94.4 21 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
34d1pexa_



not modelled 94.4 20 Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
35c2hz6A_



not modelled 94.2 14 PDB header:signaling protein
Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1
PDBTitle: the crystal structure of human ire1-alpha luminal domain
36d1kv9a2



not modelled 94.1 12 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
37d1w6sa_



not modelled 93.1 13 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
38c2ghsA_



not modelled 92.9 15 PDB header:calcium-binding protein
Chain: A: PDB Molecule:agr_c_1268p;
PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution
39d2ghsa1



not modelled 92.9 15 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
40c3p1lA_



not modelled 92.9 17 PDB header:protein binding
Chain: A: PDB Molecule:lipoprotein yfgl;
PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals.
41c2iwaA_



not modelled 92.7 16 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: unbound glutaminyl cyclotransferase from carica papaya.
42c3c7xA_



not modelled 92.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-14;
PDBTitle: hemopexin-like domain of matrix metalloproteinase 14
43c1gq1B_



not modelled 92.0 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase;
PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form
44c3lp9C_



not modelled 91.2 20 PDB header:plant protein
Chain: C: PDB Molecule:ls-24;
PDBTitle: crystal structure of ls24, a seed albumin from lathyrus2 sativus
45c2cltB_



not modelled 89.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:interstitial collagenase;
PDBTitle: crystal structure of the active form (full-length) of human2 fibroblast collagenase.
46c3jroA_



not modelled 88.7 12 PDB header:transport protein, structural protein
Chain: A: PDB Molecule:fusion protein of protein transport protein sec13
PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
47d2bbkh_



not modelled 87.7 11 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
48c3dsmA_



not modelled 87.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bacuni_02894;
PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.
49c1nr0A_



not modelled 85.0 12 PDB header:structural protein
Chain: A: PDB Molecule:actin interacting protein 1;
PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1).
50c2xbgA_



not modelled 82.0 13 PDB header:photosynthesis
Chain: A: PDB Molecule:ycf48-like protein;
PDBTitle: crystal structure of ycf48 from thermosynechococcus2 elongatus
51d1lrwa_



not modelled 81.9 19 Fold:8-bladed beta-propeller
Superfamily:Quinoprotein alcohol dehydrogenase-like
Family:Quinoprotein alcohol dehydrogenase-like
52c3g4hB_



not modelled 80.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:regucalcin;
PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound)
53d2p4oa1



not modelled 79.0 13 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:All0351-like
54c3e5zA_



not modelled 75.6 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
55c3ottB_



not modelled 74.4 16 PDB header:transcription
Chain: B: PDB Molecule:two-component system sensor histidine kinase;
PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron
56c3oyoB_



not modelled 72.3 17 PDB header:plant protein
Chain: B: PDB Molecule:hemopexin fold protein cp4;
PDBTitle: crystal structure of hemopexin fold protein cp4 from cow pea
57c3u4yA_



not modelled 72.1 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771.
58c1qniE_



not modelled 67.4 10 PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution
59c2j57J_



not modelled 59.0 11 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin.
60c3no2A_



not modelled 57.6 12 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution
61c2h47F_



not modelled 56.4 9 PDB header:oxidoreductase/electron transport
Chain: F: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
62d1jmxb_



not modelled 51.9 11 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
63c3dr2A_



not modelled 50.7 11 PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways
64d1pbyb_



not modelled 49.6 14 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Quinohemoprotein amine dehydrogenase B chain
65c3lrvA_



not modelled 48.3 8 PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor 19;
PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function.
66d1n1ta2



not modelled 48.1 13 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
67d2madh_



not modelled 47.2 11 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
68c1pi6A_



not modelled 45.3 13 PDB header:protein binding
Chain: A: PDB Molecule:actin interacting protein 1;
PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form
69d1k32a2



not modelled 44.7 10 Fold:6-bladed beta-propeller
Superfamily:Tricorn protease N-terminal domain
Family:Tricorn protease N-terminal domain
70d2otma1



not modelled 42.6 16 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
71c3c75J_



not modelled 41.3 10 PDB header:oxidoreductase
Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain;
PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin
72d2dg1a1



not modelled 39.0 11 Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
73c3k0tA_



not modelled 37.2 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:endoribonuclease l-psp, putative;
PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000
74c1xrgB_



not modelled 36.5 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf
PDBTitle: conserved hypothetical protein from clostridium2 thermocellum cth-2968
75d1qfma1



not modelled 36.0 13 Fold:7-bladed beta-propeller
Superfamily:Peptidase/esterase 'gauge' domain
Family:Prolyl oligopeptidase, N-terminal domain
76c3dm0A_



not modelled 31.9 15 PDB header:sugar binding protein,signaling protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with
PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
77d1xrga_



not modelled 29.8 13 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
78d1qnia2



not modelled 29.4 9 Fold:7-bladed beta-propeller
Superfamily:Nitrous oxide reductase, N-terminal domain
Family:Nitrous oxide reductase, N-terminal domain
79d1qksa2



not modelled 28.7 11 Fold:8-bladed beta-propeller
Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
80d2cvla1



not modelled 28.0 8 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
81c3vh0C_



not modelled 27.8 11 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
82c2ig8C_



not modelled 27.6 15 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein pa3499;
PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa
83d1mdah_



not modelled 27.3 13 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
84c3m4sC_



not modelled 23.4 24 PDB header:unknown function
Chain: C: PDB Molecule:putative endoribonuclease l-psp;
PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form
85c3l7qD_



not modelled 19.4 13 PDB header:translation
Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator-
PDBTitle: crystal structure of aldr from streptococcus mutans
86c2i0tB_



not modelled 19.4 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:aromatic amine dehydrogenase;
PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase
87c3fgbB_



not modelled 18.7 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn;
PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b.
88d2b33a1



not modelled 18.5 4 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
89d1npea_



not modelled 18.1 10 Fold:6-bladed beta-propeller
Superfamily:YWTD domain
Family:YWTD domain
90d1qu9a_



not modelled 18.1 9 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
91d1qd9a_



not modelled 17.2 20 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
92c2w18A_



not modelled 17.2 11 PDB header:nuclear protein
Chain: A: PDB Molecule:partner and localizer of brca2;
PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2
93c2ivzD_



not modelled 17.0 11 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
94c1l0qC_



not modelled 16.9 12 PDB header:protein binding
Chain: C: PDB Molecule:surface layer protein;
PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
95c2cn2C_



not modelled 16.6 15 PDB header:hydrolase
Chain: C: PDB Molecule:beta-1,4-xyloglucan hydrolase;
PDBTitle: crystal structures of clostridium thermocellum2 xyloglucanase
96c3hxjA_



not modelled 15.7 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrrolo-quinoline quinone;
PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86
97d1v0ea1



not modelled 14.7 16 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Endo-alpha-sialidase
98d1nr0a1



not modelled 12.5 10 Fold:7-bladed beta-propeller
Superfamily:WD40 repeat-like
Family:WD40-repeat
99c3pe7A_



not modelled 12.4 10 PDB header:lyase
Chain: A: PDB Molecule:oligogalacturonate lyase;
PDBTitle: oligogalacturonate lyase in complex with manganese

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0