Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46851
DateThu Jan 5 12:35:13 GMT 2012
Unique Job IDbdd8f6c8abeebb84

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3n6qF_
Top template information
PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli
Confidence and coverage
Confidence:100.0% Coverage: 90%
313 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHF
Secondary structure 
SS confidence 
Disorder  ????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASL
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQ
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  DSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLI
Secondary structure 
SS confidence 
Disorder  ???????
???
?
Disorder confidence 
 
   .........310.........320.........330.........340......
Sequence  GASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK
Secondary structure 
SS confidence 
Disorder 
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3n6q chain F

3D model

Region: 2 - 338
Aligned: 313
Modelled: 313
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli

Phyre2

PDB 3erp chain A

3D model

Region: 2 - 334
Aligned: 310
Modelled: 311
Confidence: 100.0%
Identity: 61%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium

Phyre2

PDB 1lqa chain A

3D model

Region: 13 - 336
Aligned: 315
Modelled: 322
Confidence: 100.0%
Identity: 31%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3eau chain A domain 1

3D model

Region: 15 - 334
Aligned: 316
Modelled: 320
Confidence: 100.0%
Identity: 35%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3lut chain A

3D model

Region: 15 - 334
Aligned: 316
Modelled: 320
Confidence: 100.0%
Identity: 35%
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2

Phyre2

PDB 1pyf chain A

3D model

Region: 14 - 335
Aligned: 307
Modelled: 322
Confidence: 100.0%
Identity: 29%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1pz1 chain A

3D model

Region: 13 - 334
Aligned: 309
Modelled: 321
Confidence: 100.0%
Identity: 26%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1ur3 chain M

3D model

Region: 13 - 337
Aligned: 292
Modelled: 296
Confidence: 100.0%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3n2t chain A

3D model

Region: 13 - 334
Aligned: 305
Modelled: 319
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans

Phyre2

PDB 1gve chain A

3D model

Region: 26 - 341
Aligned: 306
Modelled: 316
Confidence: 100.0%
Identity: 27%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 2bp1 chain C

3D model

Region: 24 - 341
Aligned: 304
Modelled: 316
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2;
PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph

Phyre2

PDB 1ynp chain A

3D model

Region: 12 - 338
Aligned: 279
Modelled: 301
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)

Phyre2

PDB 1q5m chain A

3D model

Region: 11 - 336
Aligned: 280
Modelled: 298
Confidence: 100.0%
Identity: 21%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1j96 chain A

3D model

Region: 11 - 344
Aligned: 289
Modelled: 311
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3h7u chain A

3D model

Region: 13 - 342
Aligned: 275
Modelled: 303
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c9

Phyre2

PDB 1afs chain A

3D model

Region: 11 - 345
Aligned: 290
Modelled: 307
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 3up8 chain B

3D model

Region: 17 - 334
Aligned: 257
Modelled: 284
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b;
PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b

Phyre2

PDB 1us0 chain A

3D model

Region: 13 - 337
Aligned: 276
Modelled: 296
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1qwk chain A

3D model

Region: 20 - 340
Aligned: 279
Modelled: 306
Confidence: 100.0%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2

PDB 1mi3 chain A

3D model

Region: 13 - 342
Aligned: 282
Modelled: 305
Confidence: 100.0%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2
1
c3n6qF_
2
c3erpA_
3
d1lqaa_
4
d3eaua1
5
c3lutA_
6
d1pyfa_
7
d1pz1a_
8
d1ur3m_
9
c3n2tA_
10
d1gvea_
11
c2bp1C_
12
c1ynpA_
13
d1q5ma_
14
d1j96a_
15
c3h7uA_
16
d1afsa_
17
c3up8B_
18
d1us0a_
19
d1qwka_
20
d1mi3a_
21
22
23
24
25
26
27
28
29
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3n6qF_
100.0 100 PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli
2c3erpA_
100.0 61 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium
3d1lqaa_
100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
4d3eaua1
100.0 35 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
5c3lutA_
100.0 35 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
6d1pyfa_
100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
7d1pz1a_
100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
8d1ur3m_
100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
9c3n2tA_
100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans
10d1gvea_
100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
11c2bp1C_
100.0 28 PDB header:oxidoreductase
Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2;
PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph
12c1ynpA_
100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)
13d1q5ma_
100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
14d1j96a_
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
15c3h7uA_
100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c9
16d1afsa_
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
17c3up8B_
100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b;
PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b
18d1us0a_
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
19d1qwka_
100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
20d1mi3a_
100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
21d1frba_
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
22d1hqta_
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
23c3f7jB_
not modelled 100.0 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:yvgn protein;
PDBTitle: b.subtilis yvgn
24d1s1pa_
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
25c3h7rA_
not modelled 100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c8
26c3buvB_
not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase;
PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a.
27d1ah4a_
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
28c1zgdB_
not modelled 100.0 23 PDB header:plant protein
Chain: B: PDB Molecule:chalcone reductase;
PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution
29c2wztA_
not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form
30d1c9wa_
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
31d1vp5a_
not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
32d2alra_
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
33d1hw6a_
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
34c3o0kB_
not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldo/keto reductase;
PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis
35d1mzra_
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
36c2bgsA_
not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldose reductase;
PDBTitle: holo aldose reductase from barley
37c3b3dA_
not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative morphine dehydrogenase;
PDBTitle: b.subtilis ytbe
38c1vbjB_
not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin f synthase;
PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei
39c3krbB_
not modelled 100.0 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:aldose reductase;
PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution
40c3ln3A_
not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodiol dehydrogenase;
PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution
41d3bofa2
not modelled 73.3 10 Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
42c3dx5A_
not modelled 60.8 11 PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
43c3bdkB_
not modelled 54.4 11 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
44c3bolB_
not modelled 52.6 14 PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
45c3sb1B_
not modelled 38.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hydrogenase expression protein;
PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259
46c3oqbF_
not modelled 37.0 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
47c3hf3A_
not modelled 35.8 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
48d1szna2
not modelled 33.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49c3a5vA_
not modelled 33.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea
50c3g8rA_
not modelled 32.5 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
51c2ph5A_
not modelled 31.6 9 PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
52c3ou8B_
not modelled 31.1 15 PDB header:hydrolase
Chain: B: PDB Molecule:adenosine deaminase;
PDBTitle: the crystal structure of adenosine deaminase from pseudomonas2 aeruginosa
53d1ajza_
not modelled 30.7 11 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
54c1uasA_
not modelled 29.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
55c3rysA_
not modelled 29.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase 1;
PDBTitle: the crystal structure of adenine deaminase (aaur1117) from2 arthrobacter aurescens
56d1jpma1
not modelled 26.2 10 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
57d1gqna_
not modelled 25.8 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
58d1h8ba_
not modelled 23.1 21 Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
59d2nlya1
not modelled 22.2 15 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
60d1vp8a_
not modelled 19.5 14 Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:MTH1675-like
61d1bxba_
not modelled 19.4 19 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
62c1m0tB_
not modelled 19.3 13 PDB header:ligase
Chain: B: PDB Molecule:glutathione synthetase;
PDBTitle: yeast glutathione synthase
63d1tz9a_
not modelled 19.2 16 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
64d1qt1a_
not modelled 18.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
65d1zy9a2
not modelled 18.7 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
66c2kzhA_
not modelled 17.1 18 PDB header:isomerase
Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf;
PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli
67c3d0cB_
not modelled 17.1 8 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution
68d1kkoa1
not modelled 17.1 9 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
69d2hv2a1
not modelled 17.0 21 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
70c3ksmA_
not modelled 16.8 12 PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
71c2yr1B_
not modelled 16.3 12 PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426
72d2i00a1
not modelled 16.2 14 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
73c2nvaH_
not modelled 16.0 15 PDB header:lyase
Chain: H: PDB Molecule:arginine decarboxylase, a207r protein;
PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine
74c2gjxE_
not modelled 16.0 17 PDB header:hydrolase
Chain: E: PDB Molecule:beta-hexosaminidase alpha chain;
PDBTitle: crystallographic structure of human beta-hexosaminidase a
75c3dnfB_
not modelled 15.7 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
76d1uwka_
not modelled 15.5 16 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
77c2ekcA_
not modelled 14.5 17 PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
78c3sdoB_
not modelled 14.4 4 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase;
PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei
79d2gjxa1
not modelled 14.2 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
80d1vyra_
not modelled 14.1 15 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
81d2ijqa1
not modelled 14.1 10 Fold:Hyaluronidase domain-like
Superfamily:TTHA0068-like
Family:TTHA0068-like
82c2wjeA_
not modelled 13.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb;
PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4.
83c2vwtA_
not modelled 13.5 14 PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
84c2ksnA_
not modelled 13.5 31 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
85d1ub3a_
not modelled 13.0 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
86c2fknC_
not modelled 12.6 15 PDB header:lyase
Chain: C: PDB Molecule:urocanate hydratase;
PDBTitle: crystal structure of urocanase from bacillus subtilis
87c1t0oA_
not modelled 11.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose
88c2v5jB_
not modelled 11.8 15 PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
89c1vliA_
not modelled 11.5 20 PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
90c1xeaD_
not modelled 11.3 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
91c3pueA_
not modelled 11.1 10 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
92c3lmyA_
not modelled 10.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase subunit beta;
PDBTitle: the crystal structure of beta-hexosaminidase b in complex with2 pyrimethamine
93d2zd1b1
not modelled 10.8 21 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Reverse transcriptase
94d2ajta2
not modelled 10.7 9 Fold:FucI/AraA N-terminal and middle domains
Superfamily:FucI/AraA N-terminal and middle domains
Family:AraA N-terminal and middle domain-like
95d1x87a_
not modelled 10.2 16 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
96c3l2iB_
not modelled 10.2 10 PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2.
97c2jwlB_
not modelled 10.1 16 PDB header:membrane protein
Chain: B: PDB Molecule:protein tolr;
PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data
98c3gh7A_
not modelled 10.1 12 PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of beta-hexosaminidase from paenibacillus2 sp. ts12 in complex with galnac
99d1nowa1
not modelled 10.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0