Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	G	P	L	N	E	S	E	L	E	W	L	D	D	I	L	T	K	Y	N	T	D	H	A	I	L	D	V	A	E	L	D	G	L	L	T	A	V	L	S	S	P	Q	E	I	E	P	E	Q	W	L	V	A	V	W	G	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																		?																			?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Y	V	P	R	W	A	S	E	K	E	M	T	R	F	M	N	L	A	F	Q	H	M	A	D	T	A	E	R	L	N	E	F	P	E	Q	F	E	P	L	F	G	L	R	E	V	D	G	S	E	L	T	I	V	E	E	W	C	F	G
Secondary structure
SS confidence
Disorder								?																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	M	R	G	V	A	L	S	D	W	S	T	L	P	D	S	L	K	P	A	L	E	A	I	A	L	H	G	T	E	E	N	F	E	R	V	E	K	M	S	P	E	A	F	E	E	S	V	D	A	I	R	L	A	A	L	D	L	H	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Sequence		Y	W	M	A	H	P	Q	E	K	A	V	Q	Q	P	I	K	A	E	E	K	P	G	R	N	D	P	C	P	C	G	S	G	K	K	F	K	Q	C	C	L	H
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?					?						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1izm chain A Region: 10 - 183 Aligned: 164 Modelled: 174 Confidence: 99.9% Identity: 14% Fold: YgfB-like Superfamily: YgfB-like Family: YgfB-like Phyre2 PDB 2i9w chain A Region: 199 - 219 Aligned: 21 Modelled: 20 Confidence: 99.6% Identity: 52% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution Phyre2 PDB 1ozb chain I Region: 201 - 219 Aligned: 19 Modelled: 19 Confidence: 99.3% Identity: 74% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 1ozb chain I Region: 201 - 219 Aligned: 19 Modelled: 19 Confidence: 99.3% Identity: 74% PDB header:protein transport Chain: I: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus Phyre2 PDB 1ozb chain J Region: 201 - 219 Aligned: 19 Modelled: 19 Confidence: 99.3% Identity: 74% PDB header:protein transport Chain: J: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus Phyre2 PDB 1tm6 chain A Region: 202 - 219 Aligned: 18 Modelled: 18 Confidence: 99.3% Identity: 89% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 1tm6 chain A Region: 202 - 219 Aligned: 18 Modelled: 18 Confidence: 99.3% Identity: 89% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca Phyre2 PDB 2i9w chain A domain 3 Region: 201 - 219 Aligned: 19 Modelled: 19 Confidence: 97.7% Identity: 58% Fold: Sec-C motif Superfamily: Sec-C motif Family: Sec-C motif Phyre2 PDB 2ipc chain B Region: 8 - 154 Aligned: 135 Modelled: 147 Confidence: 95.4% Identity: 13% PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer Phyre2 PDB 3din chain B Region: 12 - 154 Aligned: 128 Modelled: 143 Confidence: 95.3% Identity: 13% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Phyre2 PDB 1tf5 chain A domain 2 Region: 8 - 154 Aligned: 135 Modelled: 147 Confidence: 95.0% Identity: 15% Fold: Helical scaffold and wing domains of SecA Superfamily: Helical scaffold and wing domains of SecA Family: Helical scaffold and wing domains of SecA Phyre2 PDB 1nkt chain A domain 2 Region: 51 - 154 Aligned: 103 Modelled: 104 Confidence: 93.5% Identity: 12% Fold: Helical scaffold and wing domains of SecA Superfamily: Helical scaffold and wing domains of SecA Family: Helical scaffold and wing domains of SecA Phyre2 PDB 3jux chain A Region: 69 - 154 Aligned: 85 Modelled: 86 Confidence: 92.8% Identity: 14% PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima Phyre2 PDB 2vda chain A Region: 8 - 154 Aligned: 137 Modelled: 147 Confidence: 88.9% Identity: 15% PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex Phyre2 PDB 1tf2 chain A Region: 61 - 154 Aligned: 93 Modelled: 94 Confidence: 88.6% Identity: 14% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis Phyre2 PDB 1nl3 chain B Region: 51 - 154 Aligned: 102 Modelled: 104 Confidence: 86.4% Identity: 14% PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form Phyre2 PDB 3dl8 chain B Region: 11 - 154 Aligned: 132 Modelled: 144 Confidence: 85.6% Identity: 15% PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Phyre2 PDB 1nnj chain A Region: 148 - 211 Aligned: 64 Modelled: 64 Confidence: 84.5% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Phyre2 PDB 2baa chain A Region: 191 - 216 Aligned: 26 Modelled: 26 Confidence: 77.2% Identity: 19% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Family 19 glycosidase Phyre2 PDB 2fsg chain A Region: 12 - 147 Aligned: 128 Modelled: 134 Confidence: 67.3% Identity: 13% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Phyre2 1 d1izma_ 2 c2i9wA_ 3 d1ozbi_ 4 c1ozbI_ 5 c1ozbJ_ 6 d1tm6a_ 7 c1tm6A_ 8 d2i9wa3 9 c2ipcB_ 10 c3dinB_ 11 d1tf5a2 12 d1nkta2 13 c3juxA_ 14 c2vdaA_ 15 c1tf2A_ 16 c1nl3B_ 17 c3dl8B_ 18 c1nnjA_ 19 d2baaa_ 20 c2fsgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1izma_ 99.9 14 Fold:YgfB-like Superfamily:YgfB-like Family:YgfB-like 2 c2i9wA_ 99.6 52 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution 3 d1ozbi_ 99.3 74 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 4 c1ozbI_ 99.3 74 PDB header:protein transport Chain: I: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus 5 c1ozbJ_ 99.3 74 PDB header:protein transport Chain: J: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of secb complexed with seca c-terminus 6 d1tm6a_ 99.3 89 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 7 c1tm6A_ 99.3 89 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca 8 d2i9wa3 97.7 58 Fold:Sec-C motif Superfamily:Sec-C motif Family:Sec-C motif 9 c2ipcB_ 95.4 13 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 10 c3dinB_ 95.3 13 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 11 d1tf5a2 95.0 15 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 12 d1nkta2 93.5 12 Fold:Helical scaffold and wing domains of SecA Superfamily:Helical scaffold and wing domains of SecA Family:Helical scaffold and wing domains of SecA 13 c3juxA_ 92.8 14 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 14 c2vdaA_ 88.9 15 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 15 c1tf2A_ 88.6 14 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 16 c1nl3B_ 86.4 14 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 17 c3dl8B_ 85.6 15 PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 18 c1nnjA_ 84.5 9 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 19 d2baaa_ 77.2 19 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Family 19 glycosidase 20 c2fsgA_ 67.3 13 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 21 c1k82D_ not modelled 65.1 16 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 22 d1o9ga_ not modelled 61.7 100 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase AviRa 23 d1nuia2 not modelled 56.3 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 24 c2dkvA_ not modelled 56.1 19 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of class i chitinase from oryza sativa l.2 japonica 25 d1wgea1 not modelled 54.2 71 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 26 d1ywsa1 not modelled 51.3 71 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 27 c2z39A_ not modelled 47.5 38 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of brassica juncea chitinase catalytic2 module glu234ala mutant (bjchi3-e234a) 28 c3hbhA_ not modelled 46.6 15 PDB header:hydrolase Chain: A: PDB Molecule:class iv chitinase chia4-pa2; PDBTitle: class iv chitinase structure from picea abies at 2.25a 29 c1ee8A_ not modelled 39.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 30 c2jr7A_ not modelled 36.0 71 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 31 c1i6hA_ not modelled 33.7 25 PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex 32 d1tdza3 not modelled 33.4 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 33 c3khkA_ not modelled 33.1 71 PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. 34 d1lgha_ not modelled 31.7 45 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 35 c1dvbA_ not modelled 28.7 36 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 36 d1twfa_ not modelled 27.4 25 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 37 d1dxwa_ not modelled 26.9 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 38 d1cu1a1 not modelled 26.8 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 39 d1a1qa_ not modelled 25.8 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 40 c1zmpD_ not modelled 25.7 40 PDB header:antimicrobial protein Chain: D: PDB Molecule:defensin 5; PDBTitle: crystal structure of human defensin-5 41 d1h1oa1 not modelled 25.5 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 42 d1dxja_ not modelled 25.3 31 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Family 19 glycosidase 43 c2f9jP_ not modelled 24.8 36 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 44 c2ee7A_ not modelled 23.9 18 PDB header:structural protein Chain: A: PDB Molecule:sperm flagellar protein 1; PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1 45 d1lr7a1 not modelled 23.3 83 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:Follistatin (FS) module N-terminal domain, FS-N 46 c3a44D_ not modelled 22.2 67 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 47 c3i5wB_ not modelled 21.7 44 PDB header:antimicrobial protein Chain: B: PDB Molecule:defensin-5; PDBTitle: crystal structure of human alpha-defensin 5 (mutant r13h) 48 c1zmpA_ not modelled 21.4 44 PDB header:antimicrobial protein Chain: A: PDB Molecule:defensin 5; PDBTitle: crystal structure of human defensin-5 49 c1zmpB_ not modelled 21.4 44 PDB header:antimicrobial protein Chain: B: PDB Molecule:defensin 5; PDBTitle: crystal structure of human defensin-5 50 c1zmpC_ not modelled 21.4 44 PDB header:antimicrobial protein Chain: C: PDB Molecule:defensin 5; PDBTitle: crystal structure of human defensin-5 51 d1ug7a_ not modelled 21.3 12 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 52 c3s1sA_ not modelled 20.7 71 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 53 d5crxb2 not modelled 20.2 10 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 54 c2ns5A_ not modelled 20.0 42 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization 55 c2jtbA_ not modelled 19.9 47 PDB header:toxin Chain: A: PDB Molecule:hainantoxin-3; PDBTitle: three dimensional solution structure of hainantoxin-iii by2 2d 1h-nmr 56 d1jmxa1 not modelled 19.8 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 57 c3h9gA_ not modelled 19.3 42 PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn 58 c2f5qA_ not modelled 19.1 9 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 59 d1jw2a_ not modelled 18.8 31 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 60 c2wh9A_ not modelled 17.5 100 PDB header:membrane protein inhibitor Chain: A: PDB Molecule:guangxitoxin-1egxtx-1e; PDBTitle: solution structure of gxtx-1e 61 c2cnjD_ not modelled 17.5 46 PDB header:receptor Chain: D: PDB Molecule:cation-independent mannose-6-phosphate receptor; PDBTitle: nmr studies on the interaction of insulin-growth factor ii (2 igf-ii) with igf2r domain 11 62 d1lkoa2 not modelled 17.2 36 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 63 c1aqsA_ not modelled 17.1 47 PDB header:metallothionein Chain: A: PDB Molecule:cu-metallothionein; PDBTitle: cu-metallothionein from saccharomyces cerevisiae, nmr, 102 structures 64 c1yuzB_ not modelled 16.7 36 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 65 d1gp0a_ not modelled 16.5 50 Fold:Mannose 6-phosphate receptor domain Superfamily:Mannose 6-phosphate receptor domain Family:Mannose 6-phosphate receptor domain 66 c1gp0A_ not modelled 16.5 50 PDB header:receptor Chain: A: PDB Molecule:cation-independent mannose-6-phosphate receptor; PDBTitle: human igf2r domain 11 67 d1lpba2 not modelled 16.2 67 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 68 c2vsxA_ not modelled 15.8 50 PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex 69 d2au5a1 not modelled 15.6 18 Fold:EF2947-like Superfamily:EF2947-like Family:EF2947-like 70 d2aqaa1 not modelled 15.5 14 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 71 c1gp3A_ not modelled 15.1 50 PDB header:receptor Chain: A: PDB Molecule:cation-independent mannose-6-phosphate receptor; PDBTitle: human igf2r domain 11 72 d1sq1a_ not modelled 14.8 67 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 73 d1z6ra3 not modelled 14.3 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 74 d1tpna_ not modelled 14.3 57 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 75 c2rg8A_ not modelled 13.8 19 PDB header:apoptosis, translation Chain: A: PDB Molecule:programmed cell death protein 4; PDBTitle: crystal structure of programmed for cell death 4 middle ma32 domain 76 c2fwrA_ not modelled 13.7 83 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad25; PDBTitle: structure of archaeoglobus fulgidis xpb 77 c2apnA_ not modelled 13.6 67 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 78 c1k5kA_ not modelled 13.6 67 PDB header:transcription Chain: A: PDB Molecule:tat protein; PDBTitle: homonuclear 1h nuclear magnetic resonance assignment and2 structural characterization of hiv-1 tat mal protein 79 c1hv8B_ not modelled 13.3 67 PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii 80 c1zfnA_ not modelled 12.5 63 PDB header:transferase Chain: A: PDB Molecule:adenylyltransferase thif; PDBTitle: structural analysis of escherichia coli thif 81 d3d4ub2 not modelled 12.4 78 Fold:Defensin-like Superfamily:Defensin-like Family:Tick carboxypeptidase inhibitor-like 82 c1gqbB_ not modelled 11.9 46 PDB header:receptor Chain: B: PDB Molecule:cation-independent mannose-6-phosphate receptor; PDBTitle: human mir-receptor, repeat 11 83 d1oywa2 not modelled 11.7 67 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 84 c1imtA_ not modelled 11.7 50 PDB header:toxin Chain: A: PDB Molecule:intestinal toxin 1; PDBTitle: mamba intestinal toxin 1, nmr, 39 structures 85 c3s8vX_ not modelled 11.6 67 PDB header:signaling protein Chain: X: PDB Molecule:dickkopf-related protein 1; PDBTitle: crystal structure of lrp6-dkk1 complex 86 d1rifa_ not modelled 11.6 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:DNA helicase UvsW 87 d1iqpa2 not modelled 11.6 67 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 88 d1pbya1 not modelled 11.4 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 89 d1qypa_ not modelled 11.4 40 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 90 c3fhtA_ not modelled 11.2 50 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna 91 c1aq5C_ not modelled 11.0 64 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 92 c2gajA_ not modelled 11.0 25 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 93 c2elrA_ not modelled 11.0 100 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 15th c2h2 zinc finger of human2 zinc finger protein 406 94 d1uhwa_ not modelled 10.9 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DEP domain 95 c2j04C_ not modelled 10.9 15 PDB header:transcription Chain: C: PDB Molecule:hypothetical protein ypl007c; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 96 c2bx9J_ not modelled 10.9 75 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 97 d1khda1 not modelled 10.9 14 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 98 c3i5yA_ not modelled 10.9 50 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp 99 d1gkub1 not modelled 10.7 67 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Helicase-like "domain" of reverse gyrase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0