Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	H	S	K	W	A	N	T	R	H	R	K	A	A	Q	D	A	K	R	G	K	I	F	T	K	I	I	R	E	L	V	T	A	A	K	L	G	G	G	D	P	D	A	N	P	R	L	R	A	A	V	D	K	A	L	S	N	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?																					?			?	?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	T	R	D	T	L	N	R	A	I	A	R	G	V	G	G	D	D	D	A	N	M	E	T	I	I	Y	E	G	Y	G	P	G	G	T	A	I	M	I	E	C	L	S	D	N	R	N	R	T	V	A	E	V	R	H	A	F	S	K	C
Secondary structure
SS confidence
Disorder		?	?										?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	G	N	L	G	T	D	G	S	V	A	Y	L	F	S	K	K	G	V	I	S	F	E	K	G	D	E	D	T	I	M	E	A	A	L	E	A	G	A	E	D	V	V	T	Y	D	D	G	A	I	D	V	Y	T	A	W	E	E	M	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	V	R	D	A	L	E	A	A	G	L	K	A	D	S	A	E	V	S	M	I	P	S	T	K	A	D	M	D	A	E	T	A	P	K	L	M	R	L	I	D	M	L	E	D	C	D	D	V	Q	E	V	Y	H	N	G	E	I	S	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.
Sequence		E	V	A	A	T	L
Secondary structure
SS confidence
Disorder					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lfp chain A Region: 5 - 245 Aligned: 240 Modelled: 241 Confidence: 100.0% Identity: 44% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 1kon chain A Region: 3 - 246 Aligned: 233 Modelled: 244 Confidence: 100.0% Identity: 99% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 1mw7 chain A Region: 23 - 237 Aligned: 212 Modelled: 215 Confidence: 100.0% Identity: 31% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 3k85 chain B Region: 148 - 198 Aligned: 51 Modelled: 51 Confidence: 65.2% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron Phyre2 PDB 2jsx chain A Region: 169 - 241 Aligned: 73 Modelled: 73 Confidence: 62.7% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 PDB 3ibw chain A Region: 169 - 233 Aligned: 65 Modelled: 65 Confidence: 62.5% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 3ke8 chain A Region: 106 - 196 Aligned: 74 Modelled: 74 Confidence: 56.3% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex Phyre2 PDB 2aun chain A domain 2 Region: 174 - 234 Aligned: 58 Modelled: 61 Confidence: 50.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: LD-carboxypeptidase A N-terminal domain-like Phyre2 PDB 2zf8 chain A Region: 177 - 233 Aligned: 57 Modelled: 57 Confidence: 45.7% Identity: 9% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2cve chain A Region: 148 - 223 Aligned: 74 Modelled: 76 Confidence: 42.3% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 Phyre2 PDB 1vi7 chain A Region: 149 - 223 Aligned: 74 Modelled: 75 Confidence: 42.2% Identity: 7% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 2e1c chain A Region: 169 - 238 Aligned: 70 Modelled: 70 Confidence: 38.6% Identity: 11% PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Phyre2 PDB 2cyy chain A domain 2 Region: 169 - 239 Aligned: 71 Modelled: 67 Confidence: 37.4% Identity: 11% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2zbc chain H Region: 169 - 239 Aligned: 71 Modelled: 70 Confidence: 36.8% Identity: 11% PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. Phyre2 PDB 2f06 chain B Region: 99 - 222 Aligned: 120 Modelled: 124 Confidence: 36.4% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron Phyre2 PDB 1i1g chain A domain 2 Region: 170 - 234 Aligned: 65 Modelled: 65 Confidence: 34.5% Identity: 18% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 1k47 chain A domain 2 Region: 142 - 197 Aligned: 56 Modelled: 56 Confidence: 34.4% Identity: 13% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Phosphomevalonate kinase (PMK) Phyre2 PDB 2ply chain B Region: 175 - 246 Aligned: 72 Modelled: 72 Confidence: 33.5% Identity: 13% PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Phyre2 PDB 3bzq chain A Region: 170 - 220 Aligned: 51 Modelled: 51 Confidence: 31.1% Identity: 22% PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis Phyre2 PDB 1ub9 chain A Region: 175 - 232 Aligned: 58 Modelled: 58 Confidence: 31.1% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 1 d1lfpa_ 2 d1kona_ 3 d1mw7a_ 4 c3k85B_ 5 c2jsxA_ 6 c3ibwA_ 7 c3ke8A_ 8 d2auna2 9 c2zf8A_ 10 c2cveA_ 11 c1vi7A_ 12 c2e1cA_ 13 d2cyya2 14 c2zbcH_ 15 c2f06B_ 16 d1i1ga2 17 d1k47a2 18 c2plyB_ 19 c3bzqA_ 20 d1ub9a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lfpa_ 100.0 44 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 2 d1kona_ 100.0 99 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 3 d1mw7a_ 100.0 31 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 4 c3k85B_ 65.2 18 PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron 5 c2jsxA_ 62.7 23 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 6 c3ibwA_ 62.5 12 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 7 c3ke8A_ 56.3 26 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 8 d2auna2 50.9 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 9 c2zf8A_ 45.7 9 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 10 c2cveA_ 42.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 11 c1vi7A_ 42.2 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 12 c2e1cA_ 38.6 11 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 13 d2cyya2 37.4 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 14 c2zbcH_ 36.8 11 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 15 c2f06B_ 36.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 16 d1i1ga2 34.5 18 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 17 d1k47a2 34.4 13 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 18 c2plyB_ 33.5 13 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 19 c3bzqA_ 31.1 22 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 20 d1ub9a_ 31.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 21 d1sc6a3 not modelled 29.1 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 22 d1ewqa2 not modelled 27.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 23 d1jr3d2 not modelled 27.2 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 24 d1lxja_ not modelled 27.0 7 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 25 d1weya_ not modelled 26.4 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 26 c2p6tH_ not modelled 25.8 7 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 27 c3k2qA_ not modelled 25.5 17 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 28 c3l7pA_ not modelled 25.3 16 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 29 d1lxna_ not modelled 25.3 18 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 30 c1fpqA_ not modelled 25.3 27 PDB header:transferase Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase; PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase 31 c1i1gA_ not modelled 25.2 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 32 c2vsaA_ not modelled 24.5 45 PDB header:toxin Chain: A: PDB Molecule:mosquitocidal toxin; PDBTitle: structure and mode of action of a mosquitocidal holotoxin 33 d2cg4a2 not modelled 24.2 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 34 c2kgrA_ not modelled 23.4 9 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a 35 d1kkca2 not modelled 23.3 47 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 36 c2epiA_ not modelled 22.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0045 protein mj1052; PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2) 37 c2e1aD_ not modelled 22.3 17 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 38 d1kkha2 not modelled 22.3 11 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 39 d1ul3a_ not modelled 21.9 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 40 d2nzca1 not modelled 21.9 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 41 c2csuB_ not modelled 21.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 42 d1qmha1 not modelled 21.1 24 Fold:Thioredoxin fold Superfamily:RNA 3'-terminal phosphate cyclase, RPTC, insert domain Family:RNA 3'-terminal phosphate cyclase, RPTC, insert domain 43 d1cc8a_ not modelled 19.9 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 44 d1q5za_ not modelled 19.8 22 Fold:Invasion protein A (SipA) , C-terminal actin binding domain Superfamily:Invasion protein A (SipA) , C-terminal actin binding domain Family:Invasion protein A (SipA) , C-terminal actin binding domain 45 c1q5zA_ not modelled 19.8 22 PDB header:cell invasion Chain: A: PDB Molecule:sipa; PDBTitle: crystal structure of the c-terminal actin binding domain of2 salmonella invasion protein a (sipa) 46 c3s01A_ not modelled 19.5 20 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 47 c3canA_ not modelled 19.4 22 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 48 d2iboa1 not modelled 19.2 19 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 49 c1zrsB_ not modelled 19.0 15 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 50 d1zl0a2 not modelled 18.7 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 51 c3fiaA_ not modelled 18.5 13 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: crystal structure of the eh 1 domain from human intersectin-2 1 protein. northeast structural genomics consortium target3 hr3646e. 52 d2ev0a2 not modelled 18.4 10 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 53 d1ygya3 not modelled 18.4 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 54 d2ex4a1 not modelled 18.3 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:AD-003 protein-like 55 d1gtra1 not modelled 18.1 13 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain 56 d2q02a1 not modelled 17.8 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 57 d1wb9a2 not modelled 17.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 58 d2f06a2 not modelled 17.1 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 59 c2e7xA_ not modelled 16.9 7 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 60 c3o3nB_ not modelled 16.9 14 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 61 c2nyiB_ not modelled 16.5 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 62 d2f06a1 not modelled 16.4 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 63 d1j5ya2 not modelled 16.4 15 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 64 d1mwza_ not modelled 16.4 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 65 d4pfka_ not modelled 16.1 35 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 66 c2hw5F_ not modelled 15.6 29 PDB header:lyase Chain: F: PDB Molecule:enoyl-coa hydratase; PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1 67 d1fima_ not modelled 15.4 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 68 c2dhaA_ not modelled 15.4 15 PDB header:rna binding protein Chain: A: PDB Molecule:flj20171 protein; PDBTitle: solution structure of the second rna recognition motif in2 hypothetical protein flj201171 69 d1hwua_ not modelled 15.3 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 70 c1ewrA_ not modelled 15.1 22 PDB header:hydrolase Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of taq muts 71 d3cx5d2 not modelled 14.9 56 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 72 c3fybA_ not modelled 14.8 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 73 c2djwF_ not modelled 14.8 9 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 74 c2cg4B_ not modelled 14.7 10 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 75 c3g23A_ not modelled 14.3 16 PDB header:hydrolase Chain: A: PDB Molecule:ld-carboxypeptidase a; PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution 76 d1ppjd2 not modelled 13.9 44 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 77 c3ia1A_ not modelled 13.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 78 c3lk7A_ not modelled 13.8 12 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a 79 d2cfxa2 not modelled 13.5 6 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 80 d2o35a1 not modelled 13.3 33 Fold:SMc04008-like Superfamily:SMc04008-like Family:SMc04008-like 81 c2o35A_ not modelled 13.3 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf1244; PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti 82 c2i38A_ not modelled 13.3 22 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 83 c3jz3B_ not modelled 13.2 34 PDB header:transferase Chain: B: PDB Molecule:sensor protein qsec; PDBTitle: structure of the cytoplasmic segment of histidine kinase qsec 84 d1u8sa1 not modelled 13.2 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 85 c1b4aA_ not modelled 13.0 12 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 86 d2adca1 not modelled 12.9 21 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 87 d1lq1a_ not modelled 12.7 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:Spo0A 88 d2u1aa_ not modelled 12.6 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 c1zxxA_ not modelled 12.5 35 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 90 d1gd0a_ not modelled 12.3 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 91 c3i4pA_ not modelled 12.3 5 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens 92 c2d9oA_ not modelled 12.2 17 PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 93 c1ewqA_ not modelled 12.1 22 PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution 94 d2g0wa1 not modelled 12.0 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 95 c3thxB_ not modelled 11.9 17 PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp 96 d1pfka_ not modelled 11.8 35 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 97 c3dx5A_ not modelled 11.6 14 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 98 c2pc6C_ not modelled 11.6 11 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 99 c2cfxD_ not modelled 11.4 6 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0