Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	E	K	P	A	V	E	V	R	L	D	K	W	L	W	A	A	R	F	Y	K	T	R	A	L	A	R	E	M	I	E	G	G	K	V	H	Y	N	G	Q	R	S	K	P	S	K	I	V	E	L	N	A	T	L	T	L	R	Q	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	D	E	R	T	V	I	V	K	A	I	T	E	Q	R	R	P	A	S	E	A	A	L	L	Y	E	E	T	A	E	S	V	E	K	R	E	K	M	A	L	A	R	K	L	N	A	L	T	M	P	H	P	D	R	R	P	D	K	K	E
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?															?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.
Sequence		R	R	D	L	L	R	F	K	H	G	D	S	E
Secondary structure
SS confidence
Disorder										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1dm9 chain A Region: 5 - 108 Aligned: 104 Modelled: 104 Confidence: 100.0% Identity: 100% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd Phyre2 PDB 1dm9 chain A Region: 5 - 108 Aligned: 104 Modelled: 104 Confidence: 100.0% Identity: 100% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Heat shock protein 15 kD Phyre2 PDB 2k6p chain A Region: 9 - 91 Aligned: 83 Modelled: 83 Confidence: 99.7% Identity: 27% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 Phyre2 PDB 3dh3 chain C Region: 6 - 118 Aligned: 102 Modelled: 113 Confidence: 99.5% Identity: 24% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 2uub chain D domain 1 Region: 8 - 58 Aligned: 51 Modelled: 51 Confidence: 99.5% Identity: 29% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 1vio chain A domain 2 Region: 8 - 65 Aligned: 57 Modelled: 58 Confidence: 99.4% Identity: 21% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Pseudouridine synthase RsuA N-terminal domain Phyre2 PDB 1c06 chain A Region: 8 - 58 Aligned: 51 Modelled: 51 Confidence: 99.4% Identity: 31% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 2gy9 chain D domain 1 Region: 8 - 58 Aligned: 51 Modelled: 51 Confidence: 99.4% Identity: 31% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 1ksk chain A Region: 7 - 118 Aligned: 103 Modelled: 109 Confidence: 99.4% Identity: 15% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Phyre2 PDB 3bbn chain D Region: 8 - 58 Aligned: 51 Modelled: 51 Confidence: 99.3% Identity: 27% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 1p9k chain A Region: 1 - 65 Aligned: 65 Modelled: 65 Confidence: 99.3% Identity: 15% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: YbcJ-like Phyre2 PDB 1vio chain A Region: 8 - 118 Aligned: 100 Modelled: 101 Confidence: 99.3% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 PDB 2cqj chain A Region: 4 - 63 Aligned: 60 Modelled: 60 Confidence: 99.2% Identity: 18% PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog Phyre2 PDB 3hp7 chain A Region: 8 - 65 Aligned: 58 Modelled: 58 Confidence: 99.0% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. Phyre2 PDB 2xzm chain D Region: 8 - 57 Aligned: 50 Modelled: 50 Confidence: 98.7% Identity: 16% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 1s1h chain D Region: 8 - 57 Aligned: 50 Modelled: 50 Confidence: 98.7% Identity: 24% PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 1h3f chain A domain 2 Region: 5 - 69 Aligned: 65 Modelled: 65 Confidence: 97.9% Identity: 18% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 PDB 1h3e chain A Region: 5 - 69 Aligned: 65 Modelled: 65 Confidence: 97.7% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol Phyre2 PDB 3iz6 chain C Region: 10 - 57 Aligned: 48 Modelled: 48 Confidence: 97.6% Identity: 23% PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1ksk chain A domain 3 Region: 9 - 62 Aligned: 53 Modelled: 53 Confidence: 97.3% Identity: 21% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Pseudouridine synthase RsuA N-terminal domain Phyre2 1 c1dm9A_ 2 d1dm9a_ 3 c2k6pA_ 4 c3dh3C_ 5 d2uubd1 6 d1vioa2 7 d1c06a_ 8 d2gy9d1 9 c1kskA_ 10 c3bbnD_ 11 d1p9ka_ 12 c1vioA_ 13 c2cqjA_ 14 c3hp7A_ 15 c2xzmD_ 16 c1s1hD_ 17 d1h3fa2 18 c1h3eA_ 19 c3iz6C_ 20 d1kska3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1dm9A_ 100.0 100 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 2 d1dm9a_ 100.0 100 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 3 c2k6pA_ 99.7 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 4 c3dh3C_ 99.5 24 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 5 d2uubd1 99.5 29 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 6 d1vioa2 99.4 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 7 d1c06a_ 99.4 31 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 8 d2gy9d1 99.4 31 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 9 c1kskA_ 99.4 15 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 10 c3bbnD_ 99.3 27 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 11 d1p9ka_ 99.3 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 12 c1vioA_ 99.3 16 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 13 c2cqjA_ 99.2 18 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 14 c3hp7A_ 99.0 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 15 c2xzmD_ 98.7 16 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 16 c1s1hD_ 98.7 24 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 17 d1h3fa2 97.9 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 18 c1h3eA_ 97.7 18 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 19 c3iz6C_ 97.6 23 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 20 d1kska3 97.3 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 21 c2janD_ not modelled 97.2 23 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 22 d1jh3a_ not modelled 97.2 25 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 23 c3kbgA_ not modelled 93.8 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 24 c2xzmW_ not modelled 93.4 9 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 25 c3iz6D_ not modelled 90.5 7 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 26 c1yj5C_ not modelled 85.2 18 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 27 d2g1la1 not modelled 83.4 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 28 c3izbD_ not modelled 80.0 10 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 29 c3kt9A_ not modelled 79.3 6 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 30 c3fm8A_ not modelled 78.1 8 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 31 c3hvzB_ not modelled 77.8 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 32 c2eh0A_ not modelled 76.5 12 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 33 c2kmmA_ not modelled 74.1 9 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 34 d1yjma1 not modelled 73.3 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 35 d2ff4a3 not modelled 73.3 17 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 36 c3po0A_ not modelled 72.3 22 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 37 c3elsA_ not modelled 72.2 10 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 38 d1wlna1 not modelled 70.1 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 39 c3poaA_ not modelled 70.0 14 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 40 d1fm0d_ not modelled 69.7 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 41 d1g6ga_ not modelled 69.7 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 42 d2affa1 not modelled 68.7 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 43 d1wxqa2 not modelled 67.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 44 d1vjka_ not modelled 67.3 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 45 c2ktlA_ not modelled 66.9 16 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans 46 d1tkea1 not modelled 66.8 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 47 c2qieB_ not modelled 66.2 26 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 48 c2jkdB_ not modelled 65.9 10 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 49 c3dwmA_ not modelled 63.3 9 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 50 d1g3ga_ not modelled 60.7 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 51 c2ff4B_ not modelled 60.4 15 PDB header:transcription Chain: B: PDB Molecule:probable regulatory protein embr; PDBTitle: mycobacterium tuberculosis embr in complex with low affinity2 phosphopeptide 52 c1r21A_ not modelled 60.0 9 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 53 c3hx1B_ not modelled 58.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 54 c2jqlA_ not modelled 57.9 23 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 55 d1zud21 not modelled 57.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 56 c3cwiA_ not modelled 56.6 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 57 c3gqsB_ not modelled 56.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 58 d1xo3a_ not modelled 54.7 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 59 d1xnea_ not modelled 53.8 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 60 d2piea1 not modelled 51.6 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 61 d1nyra2 not modelled 50.0 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 62 d1ujxa_ not modelled 49.8 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 63 d2cu3a1 not modelled 48.3 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 64 c1v8cA_ not modelled 47.2 32 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 65 c2qjlA_ not modelled 46.7 14 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 66 c1gxcA_ not modelled 45.1 20 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 67 d1gxca_ not modelled 45.1 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 68 c2g1eA_ not modelled 44.3 18 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 69 d1v8ca1 not modelled 43.4 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 70 d1s04a_ not modelled 43.3 22 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 71 d1wgka_ not modelled 42.6 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 72 c2kl0A_ not modelled 42.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 73 c2k9xA_ not modelled 42.0 14 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 74 d1tygb_ not modelled 41.8 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 75 c2jpeA_ not modelled 40.2 11 PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1 76 c3mmlE_ not modelled 40.2 15 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 77 c3gmgB_ not modelled 39.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 78 c2kklA_ not modelled 38.4 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 79 c3rpfC_ not modelled 37.5 9 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 80 c2l52A_ not modelled 36.3 9 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 81 d1rwsa_ not modelled 36.2 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 82 c2jv2A_ not modelled 34.8 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1500; PDBTitle: solution structure of the n-terminal domain of ph1500 83 d2brfa1 not modelled 33.6 28 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 84 c2ekiA_ not modelled 33.1 14 PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 85 c1tygG_ not modelled 32.2 14 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 86 d2exda1 not modelled 30.9 12 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 87 c1mhsA_ not modelled 30.5 17 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 88 c3j09A_ not modelled 30.5 19 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 89 c1wwtA_ not modelled 30.3 23 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 90 c2zxeA_ not modelled 29.8 14 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 91 d1lgpa_ not modelled 29.6 10 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 92 d1ryja_ not modelled 29.3 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 93 c2hj1A_ not modelled 28.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 94 d2hj1a1 not modelled 28.9 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 95 c3b8eC_ not modelled 28.8 14 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 96 c2zagB_ not modelled 28.6 15 PDB header:transferase Chain: B: PDB Molecule:oligosaccharyl transferase stt3 subunit related protein; PDBTitle: crystal structure of the semet-substituted soluble domain of stt3 from2 p. furiosus 97 c2k5hA_ not modelled 28.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 98 d1uhta_ not modelled 27.8 14 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 99 c3ixzA_ not modelled 27.2 12 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 100 d1k25a2 not modelled 27.2 10 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 101 c2hc8A_ not modelled 27.1 17 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 102 c3cp0A_ not modelled 26.7 16 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 103 c3j08A_ not modelled 25.6 20 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 104 d1dmza_ not modelled 22.7 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 105 c3oepA_ not modelled 22.2 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 106 d1aoza1 not modelled 21.9 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 107 d2hd9a1 not modelled 21.5 8 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0