Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	L	I	V	G	I	S	G	A	S	G	A	I	Y	G	V	R	L	L	Q	V	L	R	D	V	T	D	I	E	T	H	L	V	M	S	Q	A	A	R	Q	T	L	S	L	E	T	D	F	S	L	R	E	V	Q	A	L	A	D
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	H	D	A	R	D	I	A	A	S	I	S	S	G	S	F	Q	T	L	G	M	V	I	L	P	C	S	I	K	T	L	S	G	I	V	H	S	Y	T	D	G	L	L	T	R	A	A	D	V	V	L	K	E	R	R	P	L	V	L
Secondary structure
SS confidence
Disorder									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		C	V	R	E	T	P	L	H	L	G	H	L	R	L	M	T	Q	A	A	E	I	G	A	V	I	M	P	P	V	P	A	F	Y	H	R	P	Q	S	L	D	D	V	I	N	Q	T	V	N	R	V	L	D	Q	F	A	I	T	L	P	E
Secondary structure
SS confidence
Disorder																						?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		D	L	F	A	R	W	Q	G	A
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3zqu chain A Region: 2 - 188 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 42% PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase Phyre2 PDB 1sbz chain A Region: 2 - 188 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 54% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 PDB 2ejb chain A Region: 1 - 182 Aligned: 174 Modelled: 182 Confidence: 100.0% Identity: 43% PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus Phyre2 PDB 1mvl chain A Region: 2 - 169 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s Phyre2 PDB 1mvl chain A Region: 2 - 169 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 18% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 PDB 1g5q chain A Region: 2 - 166 Aligned: 156 Modelled: 165 Confidence: 100.0% Identity: 14% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 PDB 3lqk chain A Region: 2 - 173 Aligned: 171 Modelled: 172 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c Phyre2 PDB 3qjg chain D Region: 2 - 166 Aligned: 156 Modelled: 165 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus Phyre2 PDB 3mcu chain F Region: 2 - 187 Aligned: 173 Modelled: 174 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. Phyre2 PDB 1qzu chain A Region: 2 - 156 Aligned: 149 Modelled: 155 Confidence: 100.0% Identity: 19% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 PDB 1qzu chain B Region: 2 - 156 Aligned: 149 Modelled: 155 Confidence: 100.0% Identity: 19% PDB header:lyase Chain: B: PDB Molecule:hypothetical protein mds018; PDBTitle: crystal structure of human phosphopantothenoylcysteine decarboxylase Phyre2 PDB 1p3y chain 1 Region: 2 - 174 Aligned: 161 Modelled: 165 Confidence: 100.0% Identity: 16% Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Phyre2 PDB 2q1w chain C Region: 1 - 36 Aligned: 32 Modelled: 36 Confidence: 93.5% Identity: 22% PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Phyre2 PDB 1bxk chain A Region: 1 - 36 Aligned: 32 Modelled: 36 Confidence: 93.1% Identity: 22% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 3dhn chain A Region: 1 - 35 Aligned: 31 Modelled: 35 Confidence: 92.7% Identity: 35% PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. Phyre2 PDB 3gpi chain A Region: 1 - 35 Aligned: 30 Modelled: 35 Confidence: 92.4% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus Phyre2 PDB 3ia7 chain A Region: 1 - 47 Aligned: 46 Modelled: 47 Confidence: 92.3% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase Phyre2 PDB 1oc2 chain A Region: 1 - 36 Aligned: 32 Modelled: 36 Confidence: 91.8% Identity: 22% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 3mt0 chain A Region: 1 - 128 Aligned: 122 Modelled: 128 Confidence: 90.8% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 Phyre2 PDB 2z3v chain A domain 1 Region: 1 - 35 Aligned: 35 Modelled: 35 Confidence: 90.7% Identity: 11% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 1 c3zquA_ 2 d1sbza_ 3 c2ejbA_ 4 c1mvlA_ 5 d1mvla_ 6 d1g5qa_ 7 c3lqkA_ 8 c3qjgD_ 9 c3mcuF_ 10 d1qzua_ 11 c1qzuB_ 12 d1p3y1_ 13 c2q1wC_ 14 d1bxka_ 15 c3dhnA_ 16 c3gpiA_ 17 c3ia7A_ 18 d1oc2a_ 19 c3mt0A_ 20 d2z3va1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3zquA_ 100.0 42 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 2 d1sbza_ 100.0 54 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 3 c2ejbA_ 100.0 43 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 4 c1mvlA_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:ppc decarboxylase athal3a; PDBTitle: ppc decarboxylase mutant c175s 5 d1mvla_ 100.0 18 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 6 d1g5qa_ 100.0 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 7 c3lqkA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit b; PDBTitle: crystal structure of dipicolinate synthase subunit b from bacillus2 halodurans c 8 c3qjgD_ 100.0 14 PDB header:oxidoreductase Chain: D: PDB Molecule:epidermin biosynthesis protein epid; PDBTitle: epidermin biosynthesis protein epid from staphylococcus aureus 9 c3mcuF_ 100.0 21 PDB header:oxidoreductase Chain: F: PDB Molecule:dipicolinate synthase, b chain; PDBTitle: crystal structure of the dipicolinate synthase chain b from2 bacillus cereus. northeast structural genomics consortium3 target bcr215. 10 d1qzua_ 100.0 19 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 11 c1qzuB_ 100.0 19 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein mds018; PDBTitle: crystal structure of human phosphopantothenoylcysteine decarboxylase 12 d1p3y1_ 100.0 16 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 13 c2q1wC_ 93.5 22 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 14 d1bxka_ 93.1 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 15 c3dhnA_ 92.7 35 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 16 c3gpiA_ 92.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 17 c3ia7A_ 92.3 11 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 18 d1oc2a_ 91.8 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 19 c3mt0A_ 90.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 20 d2z3va1 90.7 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 21 d2p1ra1 not modelled 90.6 12 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 22 d1f0ka_ not modelled 90.6 22 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 23 c3c1oA_ not modelled 90.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 24 d1hdoa_ not modelled 89.7 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 25 d1mjha_ not modelled 88.6 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 26 c3s3tD_ not modelled 88.5 10 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 27 c2qx7A_ not modelled 87.7 22 PDB header:plant protein Chain: A: PDB Molecule:eugenol synthase 1; PDBTitle: structure of eugenol synthase from ocimum basilicum 28 c3hgmD_ not modelled 86.6 23 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 29 d1tq8a_ not modelled 86.5 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 30 c2ehdB_ not modelled 86.1 28 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure analysis of oxidoreductase 31 d1udca_ not modelled 85.3 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 32 c3rfxB_ not modelled 85.2 35 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 33 c3loqA_ not modelled 85.1 12 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 34 c3ouzA_ not modelled 84.6 13 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 35 d1pn3a_ not modelled 84.2 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 36 d1gy8a_ not modelled 84.0 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 37 d1q0qa2 not modelled 83.7 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 38 d2q49a1 not modelled 83.6 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 39 c3icpA_ not modelled 83.5 30 PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase 40 c3dzcA_ not modelled 83.5 19 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 41 c1drwA_ not modelled 83.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: escherichia coli dhpr/nhdh complex 42 d1v4va_ not modelled 82.8 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 43 d1o6ca_ not modelled 82.1 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 44 d1rpna_ not modelled 81.8 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 45 c2p5uC_ not modelled 81.7 27 PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad 46 d1rrva_ not modelled 80.8 25 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 47 d1iira_ not modelled 80.6 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 48 c2pzlB_ not modelled 80.4 27 PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp 49 c2pk3B_ not modelled 80.3 30 PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase 50 d1e5qa1 not modelled 80.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 51 c1k5hB_ not modelled 79.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 52 d1q77a_ not modelled 79.9 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 53 c3m2pD_ not modelled 79.7 13 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus 54 c3idfA_ not modelled 79.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:usp-like protein; PDBTitle: the crystal structure of a usp-like protein from wolinella2 succinogenes to 2.0a 55 d1kewa_ not modelled 79.3 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 56 d1n7ha_ not modelled 77.7 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 57 c3hskB_ not modelled 77.3 31 PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 with nadp from candida albicans 58 d1ex9a_ not modelled 77.0 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 59 c3fg9B_ not modelled 76.9 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 60 d2c5aa1 not modelled 76.7 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 61 d2cvoa1 not modelled 76.6 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 62 d1ek6a_ not modelled 75.1 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 63 c2ydyA_ not modelled 75.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine adenosyltransferase 2 subunit beta; PDBTitle: crystal structure of human s-adenosylmethionine synthetase2 2, beta subunit in orthorhombic crystal form 64 c3ab8B_ not modelled 74.9 18 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 65 d2q46a1 not modelled 74.9 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 66 c1n7gB_ not modelled 74.7 29 PDB header:lyase Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase; PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose. 67 c2iyaB_ not modelled 74.5 7 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 68 d1rz3a_ not modelled 74.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 69 c2hunB_ not modelled 74.3 12 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 70 c3ew7A_ not modelled 74.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162. 71 c2x4gA_ not modelled 73.9 23 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa 72 d1jmva_ not modelled 73.8 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 73 c3slgB_ not modelled 73.7 27 PDB header:transferase Chain: B: PDB Molecule:pbgp3 protein; PDBTitle: crystal structure of pbgp3 protein from burkholderia pseudomallei 74 c3a2kB_ not modelled 73.6 24 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 75 c2ggsB_ not modelled 70.8 33 PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii 76 d2blla1 not modelled 70.8 32 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 77 c3sc6F_ not modelled 70.6 29 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 78 c2dumD_ not modelled 70.4 15 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 79 c2pfsA_ not modelled 69.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 80 d1f6da_ not modelled 69.8 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 81 c2iodD_ not modelled 69.4 26 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydroflavonol 4-reductase; PDBTitle: binding of two substrate analogue molecules to2 dihydroflavonol-4-reductase alters the functional geometry3 of the catalytic site 82 c3tovB_ not modelled 68.9 24 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 83 c2jzcA_ not modelled 68.9 21 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 84 d1t1ra2 not modelled 67.9 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 85 c3a14B_ not modelled 67.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 86 c2f1rA_ not modelled 67.0 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 87 c3p19A_ not modelled 66.9 28 PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein 88 c3c8uA_ not modelled 66.6 21 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution 89 c3asyB_ not modelled 66.3 22 PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8 90 d1ru8a_ not modelled 65.8 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 91 d1n2sa_ not modelled 65.6 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 92 d1odfa_ not modelled 65.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 93 c2p6pB_ not modelled 64.7 14 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 94 c3ay3C_ not modelled 64.6 29 PDB header:oxidoreductase Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens 95 d1sb8a_ not modelled 64.4 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 96 c3enkB_ not modelled 64.3 14 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei 97 d1orra_ not modelled 64.2 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 98 d1q3ta_ not modelled 63.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 99 d1a9xa4 not modelled 63.6 17 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 100 c3s40C_ not modelled 63.3 8 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 101 d1fjha_ not modelled 62.9 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 102 c2x86K_ not modelled 62.8 27 PDB header:isomerase Chain: K: PDB Molecule:adp-l-glycero-d-manno-heptose-6-epimerase; PDBTitle: agme bound to adp-b-mannose 103 c2b69A_ not modelled 62.2 29 PDB header:lyase Chain: A: PDB Molecule:udp-glucuronate decarboxylase 1; PDBTitle: crystal structure of human udp-glucoronic acid decarboxylase 104 d2b69a1 not modelled 62.2 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 105 c1kh2D_ not modelled 62.2 19 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 106 c2c20D_ not modelled 61.8 24 PDB header:isomerase Chain: D: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of udp-glucose 4-epimerase 107 d2fmua1 not modelled 61.4 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 108 c3ghyA_ not modelled 61.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 109 c3iusB_ not modelled 61.1 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss 110 c1ulzA_ not modelled 61.0 23 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 111 c2rh8A_ not modelled 60.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:anthocyanidin reductase; PDBTitle: structure of apo anthocyanidin reductase from vitis vinifera 112 c2h1fB_ not modelled 60.7 18 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 113 c2q49B_ not modelled 58.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:probable n-acetyl-gamma-glutamyl-phosphate reductase; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g19940 114 d1ni5a1 not modelled 58.4 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 115 d1rkxa_ not modelled 58.0 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 116 d1sq5a_ not modelled 58.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 117 c3h2sA_ not modelled 57.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19. 118 d1e6ua_ not modelled 57.9 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 119 c2eghA_ not modelled 57.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 120 d1wvga1 not modelled 57.8 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0