Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	L	G	H	Q	Y	D	N	S	L	V	S	N	A	F	G	F	L	R	L	P	M	N	F	Q	P	Y	D	S	D	A	D	W	V	I	T	G	V	P	F	D	M	A	T	S	G	R	A	G	G	R	H	G	P	A	A	I	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?											?																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	V	S	T	N	L	A	W	E	H	N	R	F	P	W	N	F	D	M	R	E	R	L	N	V	V	D	C	G	D	L	V	Y	A	F	G	D	A	R	E	M	S	E	K	L	Q	A	H	A	E	K	L	L	A	A	G	K	R	M	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	F	G	G	D	H	F	V	T	L	P	L	L	R	A	H	A	K	H	F	G	K	M	A	L	V	H	F	D	A	H	T	D	T	Y	A	N	G	C	E	F	D	H	G	T	M	F	Y	T	A	P	K	E	G	L	I	D	P	N	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	V	Q	I	G	I	R	T	E	F	D	K	D	N	G	F	T	V	L	D	A	C	Q	V	N	D	R	S	V	D	D	V	I	A	Q	V	K	Q	I	V	G	D	M	P	V	Y	L	T	F	D	I	D	C	L	D	P	A	F	A	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	T	G	T	P	V	I	G	G	L	T	S	D	R	A	I	K	L	V	R	G	L	K	D	L	N	I	V	G	M	D	V	V	E	V	A	P	A	Y	D	Q	S	E	I	T	A	L	A	A	A	T	L	A	L	E	M	L	Y	I	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.
Sequence		A	A	K	K	G	E
Secondary structure
SS confidence
Disorder				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nip chain B Region: 13 - 306 Aligned: 289 Modelled: 294 Confidence: 100.0% Identity: 40% PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane Phyre2 PDB 1gq6 chain A Region: 13 - 303 Aligned: 287 Modelled: 291 Confidence: 100.0% Identity: 40% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 3nio chain F Region: 5 - 301 Aligned: 290 Modelled: 297 Confidence: 100.0% Identity: 40% PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase Phyre2 PDB 3m1r chain F Region: 14 - 302 Aligned: 286 Modelled: 286 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 Phyre2 PDB 3lhl chain A Region: 29 - 305 Aligned: 272 Modelled: 277 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile Phyre2 PDB 1woh chain A Region: 13 - 303 Aligned: 284 Modelled: 291 Confidence: 100.0% Identity: 29% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 1xfk chain A Region: 25 - 305 Aligned: 269 Modelled: 281 Confidence: 100.0% Identity: 23% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 2a0m chain A domain 1 Region: 14 - 303 Aligned: 282 Modelled: 290 Confidence: 100.0% Identity: 24% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 3pzl chain A Region: 19 - 305 Aligned: 274 Modelled: 287 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:agmatine ureohydrolase; PDBTitle: the crystal structure of agmatine ureohydrolase of thermoplasma2 volcanium Phyre2 PDB 1pq3 chain A Region: 34 - 306 Aligned: 272 Modelled: 273 Confidence: 100.0% Identity: 25% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 1d3v chain A Region: 34 - 306 Aligned: 270 Modelled: 273 Confidence: 100.0% Identity: 27% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 2cev chain A Region: 34 - 298 Aligned: 264 Modelled: 264 Confidence: 100.0% Identity: 30% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 3mmr chain A Region: 34 - 298 Aligned: 254 Modelled: 265 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh Phyre2 PDB 2aeb chain A domain 1 Region: 33 - 306 Aligned: 263 Modelled: 264 Confidence: 100.0% Identity: 29% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 2eiv chain H Region: 34 - 298 Aligned: 248 Modelled: 265 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: H: PDB Molecule:arginase; PDBTitle: crystal structure of the arginase from thermus thermophilus Phyre2 PDB 3a8t chain A Region: 84 - 150 Aligned: 67 Modelled: 67 Confidence: 80.6% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:adenylate isopentenyltransferase; PDBTitle: plant adenylate isopentenyltransferase in complex with atp Phyre2 PDB 3d3q chain B Region: 97 - 126 Aligned: 30 Modelled: 30 Confidence: 71.7% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 Phyre2 PDB 3epl chain A Region: 92 - 126 Aligned: 35 Modelled: 35 Confidence: 67.9% Identity: 17% PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism Phyre2 PDB 3foz chain B Region: 97 - 136 Aligned: 40 Modelled: 40 Confidence: 67.5% Identity: 25% PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) Phyre2 PDB 3exa chain D Region: 92 - 126 Aligned: 35 Modelled: 35 Confidence: 65.1% Identity: 9% PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. Phyre2 1 c3nipB_ 2 d1gq6a_ 3 c3nioF_ 4 c3m1rF_ 5 c3lhlA_ 6 d1woha_ 7 d1xfka_ 8 d2a0ma1 9 c3pzlA_ 10 d1pq3a_ 11 d1d3va_ 12 d2ceva_ 13 c3mmrA_ 14 d2aeba1 15 c2eivH_ 16 c3a8tA_ 17 c3d3qB_ 18 c3eplA_ 19 c3fozB_ 20 c3exaD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nipB_ 100.0 40 PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane 2 d1gq6a_ 100.0 40 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 3 c3nioF_ 100.0 40 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 4 c3m1rF_ 100.0 23 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 5 c3lhlA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile 6 d1woha_ 100.0 29 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 7 d1xfka_ 100.0 23 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 8 d2a0ma1 100.0 24 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 9 c3pzlA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:agmatine ureohydrolase; PDBTitle: the crystal structure of agmatine ureohydrolase of thermoplasma2 volcanium 10 d1pq3a_ 100.0 25 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 11 d1d3va_ 100.0 27 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 12 d2ceva_ 100.0 30 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 13 c3mmrA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh 14 d2aeba1 100.0 29 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 15 c2eivH_ 100.0 29 PDB header:hydrolase Chain: H: PDB Molecule:arginase; PDBTitle: crystal structure of the arginase from thermus thermophilus 16 c3a8tA_ 80.6 12 PDB header:transferase Chain: A: PDB Molecule:adenylate isopentenyltransferase; PDBTitle: plant adenylate isopentenyltransferase in complex with atp 17 c3d3qB_ 71.7 20 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 18 c3eplA_ 67.9 17 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 19 c3fozB_ 67.5 25 PDB header:transferase/rna Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase; PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe) 20 c3exaD_ 65.1 9 PDB header:transferase Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of the full-length trna2 isopentenylpyrophosphate transferase (bh2366) from3 bacillus halodurans, northeast structural genomics4 consortium target bhr41. 21 c3crqA_ not modelled 64.5 28 PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel 22 d1umya_ not modelled 59.4 16 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 23 c3godA_ not modelled 50.1 17 PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense 24 d1lt7a_ not modelled 43.7 15 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 25 d2fiqa1 not modelled 39.9 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 26 d1tifa_ not modelled 32.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 27 d1hi9a_ not modelled 31.3 15 Fold:Dipeptide transport protein Superfamily:Dipeptide transport protein Family:Dipeptide transport protein 28 c2oh2B_ not modelled 30.4 20 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 29 c2ze5A_ not modelled 28.3 14 PDB header:transferase Chain: A: PDB Molecule:isopentenyl transferase; PDBTitle: crystal structure of adenosine phosphate-isopentenyltransferase 30 c3nkdB_ not modelled 27.5 17 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 31 c1t94B_ not modelled 24.3 19 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 32 d1kyqa1 not modelled 23.0 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like 33 c2c2xB_ not modelled 22.7 23 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 34 c1k98A_ not modelled 22.3 24 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 35 c3pv9D_ not modelled 22.2 17 PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii 36 c3lfxE_ not modelled 19.0 10 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima 37 c2z84A_ not modelled 17.6 15 PDB header:hydrolase Chain: A: PDB Molecule:ufm1-specific protease 1; PDBTitle: insights from crystal and solution structures of mouse ufsp1 38 d3bofa2 not modelled 15.3 20 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 39 c3ecsD_ not modelled 14.9 14 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 40 c2yzsB_ not modelled 14.4 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 aquifex aeolicus 41 c1a4iB_ not modelled 13.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase / PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase 42 d2bona1 not modelled 12.9 14 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 43 c1vbwA_ not modelled 12.9 20 PDB header:protein binding Chain: A: PDB Molecule:trypsin inhibitor bgit; PDBTitle: crystal structure of bitter gourd trypsin inhibitor 44 c3mr2A_ not modelled 12.7 36 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 45 d1t94a2 not modelled 12.1 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 46 d1b74a1 not modelled 11.6 12 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 47 c3pu6A_ not modelled 11.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes 48 d2hkja1 not modelled 11.2 22 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Topoisomerase VI-B subunit middle domain 49 d1w85b1 not modelled 11.2 17 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 50 d1b0aa1 not modelled 10.6 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 51 c3h7aC_ not modelled 10.4 6 PDB header:oxidoreductase Chain: C: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of short-chain dehydrogenase from2 rhodopseudomonas palustris 52 c3l07B_ not modelled 10.2 24 PDB header:oxidoreductase,hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis. 53 c1b0aA_ not modelled 10.0 27 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 54 c3nglA_ not modelled 9.8 24 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 55 c3dfzB_ not modelled 9.6 16 PDB header:oxidoreductase Chain: B: PDB Molecule:precorrin-2 dehydrogenase; PDBTitle: sirc, precorrin-2 dehydrogenase 56 c3s40C_ not modelled 9.5 17 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 57 c2bp7F_ not modelled 9.5 15 PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) 58 d1ccra_ not modelled 9.3 34 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 59 d1dwma_ not modelled 9.3 23 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 60 d1k1sa2 not modelled 9.3 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 61 c3gqcB_ not modelled 9.1 17 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 62 c1tinA_ not modelled 8.8 20 PDB header:serine protease inhibitor Chain: A: PDB Molecule:trypsin inhibitor v; PDBTitle: three-dimensional structure in solution of cucurbita maxima2 trypsin inhibitor-v determined by nmr spectroscopy 63 c2w9kA_ not modelled 8.8 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c 64 d1k8kg_ not modelled 8.7 13 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 65 d1ebfa2 not modelled 8.6 14 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Homoserine dehydrogenase-like 66 c3auzA_ not modelled 8.6 19 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 67 c3bolB_ not modelled 8.4 19 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 68 d2d5ra1 not modelled 8.2 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 69 c1k1qA_ not modelled 8.2 20 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 70 d1ytca_ not modelled 8.1 20 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 71 c2fllA_ not modelled 8.0 24 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 72 d1im4a_ not modelled 7.9 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 73 c3fwaA_ not modelled 7.9 15 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 74 c3av0A_ not modelled 7.9 19 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 75 c1t3nB_ not modelled 7.8 36 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 76 c1sseA_ not modelled 7.7 38 PDB header:transcription activator Chain: A: PDB Molecule:ap-1 like transcription factor yap1; PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain 77 c4a26B_ not modelled 7.6 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic; PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase 78 d1t5oa_ not modelled 7.6 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 79 c2ri0B_ not modelled 7.5 14 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 80 d1ii7a_ not modelled 7.4 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 81 d3bula2 not modelled 7.3 23 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 82 d2ozlb1 not modelled 7.2 10 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 83 c3outC_ not modelled 7.0 10 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 84 c1fcdB_ not modelled 7.0 15 PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution 85 d1qs0b1 not modelled 6.9 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 86 c3p2oB_ not modelled 6.9 32 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 87 c2aq4A_ not modelled 6.8 22 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 88 c3p2oA_ not modelled 6.8 24 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 89 d1j20a2 not modelled 6.7 33 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 90 d1a4ia1 not modelled 6.7 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 91 c2r8kB_ not modelled 6.6 9 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 92 d1vyra_ not modelled 6.6 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 93 d1zeta2 not modelled 6.6 27 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 94 d1poia_ not modelled 6.4 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 95 d1ju2a1 not modelled 6.3 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 96 d2qapa1 not modelled 6.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 97 d2bfdb1 not modelled 6.0 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase Pyr module 98 c1cirA_ not modelled 6.0 28 PDB header:serine protease inhibitor Chain: A: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)] 99 d1fcda1 not modelled 6.0 17 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0