Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	N	T	W	N	R	L	A	L	L	I	F	A	V	L	S	L	L	V	A	G	E	L	Q	A	G	V	V	V	G	G	T	R	F	I	F	P	A	D	R	E	S	I	S	I	L	L	T	N	T	S	Q	E	S	W	L	I	N	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?																		?	?	?	?															?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	I	N	R	P	T	R	W	A	G	G	E	A	S	T	V	P	A	P	L	L	A	A	P	P	L	I	L	L	K	P	G	T	T	G	T	L	R	L	L	R	T	E	S	D	I	L	P	V	D	R	E	T	L	F	E	L	S	I	A
Secondary structure
SS confidence
Disorder				?		?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?			?						?											?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	V	P	S	G	K	V	E	N	Q	S	V	K	V	A	M	R	S	V	F	K	L	F	W	R	P	E	G	L	P	G	D	P	L	E	A	Y	Q	Q	L	R	W	T	R	N	S	Q	G	V	Q	L	T	N	P	T	P	Y	Y	I	N
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?																	?		?	?	?	?	?	?	?	?	?	?	?	?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Sequence		L	I	Q	V	S	V	N	G	K	A	L	S	N	V	G	V	V	P	P	K	S	Q	R	Q	T	S	W	C	Q	A	I	A	P	C	H	V	A	W	R	A	I	N	D	Y	G	G	L	S	A	K	K	E	Q	N	L	P
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?							?						?	?	?	?	?	?																?	?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2co7 chain B Region: 22 - 235 Aligned: 197 Modelled: 214 Confidence: 100.0% Identity: 32% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1z9s chain A Region: 23 - 235 Aligned: 195 Modelled: 212 Confidence: 100.0% Identity: 30% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 1qun chain A Region: 27 - 235 Aligned: 195 Modelled: 209 Confidence: 100.0% Identity: 32% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1l4i chain A Region: 27 - 235 Aligned: 188 Modelled: 202 Confidence: 100.0% Identity: 32% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 1qpx chain A Region: 27 - 233 Aligned: 190 Modelled: 202 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 3q48 chain B Region: 30 - 233 Aligned: 181 Modelled: 202 Confidence: 100.0% Identity: 37% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 3f6i chain B Region: 27 - 231 Aligned: 181 Modelled: 199 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 1p5v chain A domain 1 Region: 22 - 149 Aligned: 111 Modelled: 114 Confidence: 100.0% Identity: 31% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 22 - 149 Aligned: 117 Modelled: 128 Confidence: 100.0% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 27 - 153 Aligned: 122 Modelled: 127 Confidence: 100.0% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 27 - 150 Aligned: 115 Modelled: 124 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 27 - 149 Aligned: 111 Modelled: 123 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 152 - 235 Aligned: 82 Modelled: 84 Confidence: 99.8% Identity: 30% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 150 - 235 Aligned: 79 Modelled: 86 Confidence: 99.8% Identity: 33% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 150 - 235 Aligned: 80 Modelled: 86 Confidence: 99.8% Identity: 34% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 152 - 235 Aligned: 75 Modelled: 84 Confidence: 99.7% Identity: 31% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 157 - 231 Aligned: 72 Modelled: 75 Confidence: 99.6% Identity: 28% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 25 - 128 Aligned: 88 Modelled: 104 Confidence: 97.8% Identity: 16% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 28 - 128 Aligned: 85 Modelled: 101 Confidence: 97.5% Identity: 19% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 2qsv chain A Region: 26 - 207 Aligned: 168 Modelled: 169 Confidence: 97.3% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 Phyre2 PDB 3rfr chain I Region: 6 - 99 Aligned: 90 Modelled: 90 Confidence: 89.6% Identity: 20% PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m Phyre2 1 c2co7B_ 2 c1z9sA_ 3 c1qunA_ 4 c1l4iA_ 5 c1qpxA_ 6 c3q48B_ 7 c3f6iB_ 8 d1p5va1 9 d2co7b1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d2co7b2 16 d1l4ia2 17 d2j2za2 18 d1m1sa_ 19 d1rowa_ 20 c2qsvA_ 21 22 23 24 25 26 27 28 29 30 c3rfrI_ 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2co7B_ 100.0 32 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 2 c1z9sA_ 100.0 30 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 3 c1qunA_ 100.0 32 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 4 c1l4iA_ 100.0 32 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 5 c1qpxA_ 100.0 29 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 6 c3q48B_ 100.0 37 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 7 c3f6iB_ 100.0 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 8 d1p5va1 100.0 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d2co7b1 100.0 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.8 30 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.8 33 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d2co7b2 99.8 34 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d1l4ia2 99.7 31 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d2j2za2 99.6 28 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1rowa_ 97.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 c2qsvA_ 97.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 21 d1grwa_ not modelled 97.2 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 22 d1mspa_ not modelled 96.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 23 c1z9oB_ not modelled 96.4 21 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 24 c2e6jA_ not modelled 96.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 25 c2ys4A_ not modelled 95.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 26 c3qisA_ not modelled 95.1 16 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 27 d1wica_ not modelled 94.3 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 28 c3o0lB_ not modelled 94.2 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 29 c3qbtH_ not modelled 94.1 16 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 30 c3rfrI_ 89.6 20 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 31 c3ac0B_ not modelled 87.5 18 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 32 c2x41A_ not modelled 84.8 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 33 d2vzsa2 not modelled 81.6 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 34 d4ubpb_ not modelled 74.6 15 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 35 d1ejxb_ not modelled 70.1 11 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 d1e9ya1 not modelled 68.2 11 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 37 c1e42A_ not modelled 64.0 16 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 38 c1e9zA_ not modelled 62.6 11 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 39 c2lllA_ not modelled 61.5 19 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 40 c3qgaD_ not modelled 61.2 17 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 41 d1ufga_ not modelled 60.4 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 42 c3jt0B_ not modelled 58.3 20 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 43 d1w8oa1 not modelled 54.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 44 d1e42a1 not modelled 54.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 45 c3h6aB_ not modelled 52.7 10 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 46 c3k6sB_ not modelled 50.2 25 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 47 d1aoza2 not modelled 46.0 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 48 d1hfua2 not modelled 43.0 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 49 c1l9mB_ not modelled 40.9 14 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 50 c2f1eA_ not modelled 34.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 51 c2qvkA_ not modelled 33.3 11 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 52 c3eujB_ not modelled 33.1 33 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 53 c2r39A_ not modelled 33.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 54 c1u8cB_ not modelled 32.2 21 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 55 d1ifra_ not modelled 32.0 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 56 d1gyca2 not modelled 28.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 57 d1k3ra1 not modelled 27.3 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 58 d1v10a2 not modelled 26.9 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 59 c1l5gA_ not modelled 25.7 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand 60 c3rgbA_ not modelled 24.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 61 d1kyaa2 not modelled 24.0 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 62 c1yewI_ not modelled 24.0 21 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 63 c3fcsA_ not modelled 22.5 15 PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3 64 d2q9oa2 not modelled 20.9 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 65 c3ginB_ not modelled 19.9 11 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 66 d2fwua1 not modelled 19.6 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 67 d1ex0a2 not modelled 18.1 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 68 d2dpka1 not modelled 17.2 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 69 d1vjja2 not modelled 16.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 70 d1g0da2 not modelled 16.0 2 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 71 d1u00a2 not modelled 16.0 9 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 72 c1v10A_ not modelled 15.6 11 PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals 73 d1tzaa_ not modelled 15.0 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 74 c3e9tD_ not modelled 14.7 8 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 75 d1exha_ not modelled 14.6 12 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 76 d1ivta_ not modelled 13.7 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 77 c3fcuB_ not modelled 13.7 21 PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation 78 c3cfuA_ not modelled 12.2 16 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 79 c1hymB_ not modelled 11.7 29 PDB header:hydrolase (serine proteinase) Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v; PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr2 structure) 80 c2h47C_ not modelled 11.1 10 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 81 d1cc3a_ not modelled 11.1 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 82 d2ccwa1 not modelled 10.9 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 83 c2qv2A_ not modelled 10.7 23 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a role of the lowe syndrome protein ocrl in early steps of2 the endocytic pathway 84 d1cuoa_ not modelled 10.6 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 85 d1jzga_ not modelled 9.5 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 86 d1hmja_ not modelled 9.3 13 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 87 d1dkza2 not modelled 8.9 6 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 88 c1yycA_ not modelled 8.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 89 c2pheC_ not modelled 8.9 67 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 90 c2je8B_ not modelled 8.8 12 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 91 d1rkra_ not modelled 8.7 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 92 c1pzdA_ not modelled 8.7 22 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit. 93 c2phgB_ not modelled 8.5 67 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 94 d1v54g_ not modelled 8.0 17 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 95 d1nwpa_ not modelled 7.7 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 96 c3tqzA_ not modelled 7.4 20 PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii 97 d1xo8a_ not modelled 7.3 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 98 d1j6qa_ not modelled 7.3 17 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 99 c1j6qA_ not modelled 7.3 17 PDB header:chaperone Chain: A: PDB Molecule:cytochrome c maturation protein e; PDBTitle: solution structure and characterization of the heme2 chaperone ccme

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0