Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	E	I	S	S	E	L	L	N	T	I	L	T	R	V	G	G	P	G	N	I	A	S	C	G	N	C	M	T	R	L	R	L	G	V	H	D	S	S	L	V	D	P	N	I	K	T	L	E	G	V	K	G	V	I	L	T	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Q	V	Q	V	V	F	G	P	G	K	A	H	R	A	A	K	A	M	S	E	L	L	G	E	A	P	V	Q	D	A	A	E	I	A	A	Q	N	K	R	Q	L	K	A	K	Q	T	S	G	V	Q	Q	F	L	A	K	F	A	T	I
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	T	P	L	I	P	G	F	I	A	A	G	L	L	L	G	I	A	T	L	I	A	T	V	M	H	V	P	A	D	A	Q	G	T	L	P	D	A	L	N	F	M	K	V	F	S	K	G	L	F	T	F	L	V	I	L	V	G	Y	N
Secondary structure
SS confidence
Disorder				?	?																		?		?	?	?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	Q	A	F	G	G	T	G	V	N	G	A	I	I	A	A	L	F	L	L	G	Y	N	P	A	A	T	T	G	Y	Y	A	G	F	H	D	F	F	G	L	P	I	D	P	R	G	N	I	I	G	V	L	I	A	A	W	A	C	A
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?										?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	I	E	G	M	V	R	R	F	M	P	D	D	L	D	M	L	L	T	S	L	I	T	L	L	I	T	A	T	L	A	Y	L	I	I	M	P	L	G	G	W	L	F	E	G	M	S	W	L	F	M	H	L	N	S	N	P	F	G	C
Secondary structure
SS confidence
Disorder																																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	V	L	A	G	L	F	L	I	A	V	V	F	G	V	H	Q	G	F	I	P	V	Y	L	A	L	M	D	S	Q	G	F	N	S	L	F	P	I	L	S	M	A	G	A	G	Q	V	G	A	A	L	A	L	Y	W	R	A	Q	P	H
Secondary structure
SS confidence
Disorder																																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	A	L	R	S	Q	V	R	G	A	I	I	P	G	L	L	G	V	G	E	P	L	I	Y	G	V	T	L	P	R	M	K	P	F	V	T	A	C	L	G	G	A	A	G	G	L	F	I	G	L	I	A	W	W	G	L	P	M	G	L
Secondary structure
SS confidence
Disorder							?	?	?	?																																																	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Sequence		N	S	A	F	G	P	S	G	L	V	A	L	P	L	M	T	S	A	Q	G	I	L	P	A	M	A	V	Y	A	G	G	I	L	V	A	W	V	C	G	F	I	F	T	T	L	F	G	C	R	N	V	N	L	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?											?																																?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qnq chain D Region: 97 - 474 Aligned: 374 Modelled: 378 Confidence: 100.0% Identity: 16% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 3ipj chain B Region: 4 - 94 Aligned: 90 Modelled: 91 Confidence: 99.9% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile Phyre2 PDB 1iba chain A Region: 9 - 87 Aligned: 77 Modelled: 78 Confidence: 99.9% Identity: 34% PDB header:phoshphotransferase Chain: A: PDB Molecule:glucose permease; PDBTitle: glucose permease (domain iib), nmr, 11 structures Phyre2 PDB 3bp8 chain C domain 1 Region: 9 - 84 Aligned: 74 Modelled: 75 Confidence: 99.8% Identity: 35% Fold: Homing endonuclease-like Superfamily: Glucose permease domain IIB Family: Glucose permease domain IIB Phyre2 PDB 1i1g chain A domain 2 Region: 27 - 67 Aligned: 41 Modelled: 41 Confidence: 50.5% Identity: 17% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 2voy chain B Region: 98 - 139 Aligned: 39 Modelled: 42 Confidence: 42.4% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 1cii chain A domain 1 Region: 3 - 51 Aligned: 48 Modelled: 49 Confidence: 39.1% Identity: 8% Fold: Toxins' membrane translocation domains Superfamily: Colicin Family: Colicin Phyre2 PDB 2cyy chain A domain 2 Region: 29 - 90 Aligned: 62 Modelled: 62 Confidence: 37.3% Identity: 13% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 3t2l chain A Region: 28 - 38 Aligned: 11 Modelled: 11 Confidence: 33.5% Identity: 9% PDB header:cell adhesion Chain: A: PDB Molecule:putative cell adhesion protein; PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution Phyre2 PDB 1rh1 chain A domain 2 Region: 4 - 51 Aligned: 47 Modelled: 48 Confidence: 29.0% Identity: 21% Fold: Toxins' membrane translocation domains Superfamily: Colicin Family: Colicin Phyre2 PDB 2pjm chain A Region: 33 - 68 Aligned: 36 Modelled: 36 Confidence: 28.4% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii Phyre2 PDB 3sy6 chain A Region: 28 - 41 Aligned: 14 Modelled: 14 Confidence: 27.4% Identity: 29% PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution Phyre2 PDB 2cfx chain A domain 2 Region: 28 - 67 Aligned: 40 Modelled: 40 Confidence: 26.8% Identity: 13% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 1col chain A Region: 5 - 51 Aligned: 46 Modelled: 47 Confidence: 26.7% Identity: 17% Fold: Toxins' membrane translocation domains Superfamily: Colicin Family: Colicin Phyre2 PDB 2gol chain A domain 1 Region: 7 - 49 Aligned: 43 Modelled: 43 Confidence: 25.8% Identity: 28% Fold: Retroviral matrix proteins Superfamily: Retroviral matrix proteins Family: Immunodeficiency virus matrix proteins Phyre2 PDB 1vbk chain A Region: 3 - 56 Aligned: 54 Modelled: 54 Confidence: 23.9% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 Phyre2 PDB 1a0o chain H Region: 32 - 80 Aligned: 49 Modelled: 49 Confidence: 23.2% Identity: 14% PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey Phyre2 PDB 1ffg chain B Region: 34 - 80 Aligned: 47 Modelled: 47 Confidence: 23.1% Identity: 17% Fold: Ferredoxin-like Superfamily: CheY-binding domain of CheA Family: CheY-binding domain of CheA Phyre2 PDB 2djw chain F Region: 32 - 67 Aligned: 36 Modelled: 36 Confidence: 23.0% Identity: 17% PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 Phyre2 PDB 3ibw chain A Region: 32 - 61 Aligned: 30 Modelled: 30 Confidence: 22.9% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 1 c3qnqD_ 2 c3ipjB_ 3 c1ibaA_ 4 d3bp8c1 5 d1i1ga2 6 c2voyB_ 7 d1ciia1 8 d2cyya2 9 c3t2lA_ 10 d1rh1a2 11 c2pjmA_ 12 c3sy6A_ 13 d2cfxa2 14 d1cola_ 15 d2gola1 16 c1vbkA_ 17 c1a0oH_ 18 d1ffgb_ 19 c2djwF_ 20 c3ibwA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qnqD_ 100.0 16 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 2 c3ipjB_ 99.9 26 PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile 3 c1ibaA_ 99.9 34 PDB header:phoshphotransferase Chain: A: PDB Molecule:glucose permease; PDBTitle: glucose permease (domain iib), nmr, 11 structures 4 d3bp8c1 99.8 35 Fold:Homing endonuclease-like Superfamily:Glucose permease domain IIB Family:Glucose permease domain IIB 5 d1i1ga2 50.5 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 6 c2voyB_ 42.4 10 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 7 d1ciia1 39.1 8 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 8 d2cyya2 37.3 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 9 c3t2lA_ 33.5 9 PDB header:cell adhesion Chain: A: PDB Molecule:putative cell adhesion protein; PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution 10 d1rh1a2 29.0 21 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 11 c2pjmA_ 28.4 17 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 12 c3sy6A_ 27.4 29 PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution 13 d2cfxa2 26.8 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 14 d1cola_ 26.7 17 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 15 d2gola1 25.8 28 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 16 c1vbkA_ 23.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 17 c1a0oH_ 23.2 14 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 18 d1ffgb_ 23.1 17 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 19 c2djwF_ 23.0 17 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 20 c3ibwA_ 22.9 20 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 21 c1lkzB_ not modelled 19.8 25 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 22 c2xv4S_ not modelled 19.7 14 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3; PDBTitle: structure of human rpc62 (partial) 23 c2e1aD_ not modelled 19.3 8 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 24 c2pmuD_ not modelled 19.0 16 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 25 c2i88A_ not modelled 18.5 9 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 26 c3ksiA_ not modelled 18.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 27 c2zbcH_ not modelled 17.2 14 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 28 c2c5sA_ not modelled 16.7 13 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 29 c3l7oB_ not modelled 14.8 17 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 30 d1l6na1 not modelled 14.6 29 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 31 d1gxqa_ not modelled 14.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 32 d1t4za_ not modelled 13.0 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 33 c2hqnA_ not modelled 12.8 10 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 34 d2cfua2 not modelled 12.6 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 35 c3kwmC_ not modelled 12.5 16 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 36 c1oy8A_ not modelled 12.3 21 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 37 c3ufiA_ not modelled 12.3 8 PDB header:cell adhesion Chain: A: PDB Molecule:hypothetical protein bacova_04980; PDBTitle: crystal structure of a hypothetical protein2 bacova_04980(zp_02067969.1) from bacteroides ovatus atcc 8483 at 2.183 a resolution 38 d1mwza_ not modelled 12.0 22 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 39 c1m6yA_ not modelled 12.0 12 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 40 c2dbbA_ not modelled 12.0 17 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 41 c1lk5C_ not modelled 11.4 19 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 42 d1fpoa2 not modelled 11.1 10 Fold:Open three-helical up-and-down bundle Superfamily:HSC20 (HSCB), C-terminal oligomerisation domain Family:HSC20 (HSCB), C-terminal oligomerisation domain 43 c2cfuA_ not modelled 11.1 11 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 44 d1uj4a2 not modelled 10.5 28 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 45 d1vbka2 not modelled 10.5 10 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 46 c3hheA_ not modelled 10.3 8 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 47 d2c5sa2 not modelled 10.0 12 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 48 d2cg4a2 not modelled 10.0 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 49 c1uj6A_ not modelled 9.8 10 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 50 d1kgsa1 not modelled 9.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 51 c2f8mB_ not modelled 9.6 21 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 52 d2prra1 not modelled 9.0 14 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 53 d1ilea1 not modelled 8.8 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 54 d2ff4a1 not modelled 8.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 55 d1qm4a1 not modelled 8.3 12 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 56 d1ry9a_ not modelled 8.2 15 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 57 d1ciya1 not modelled 8.1 29 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 58 c3zqsB_ not modelled 8.1 25 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain 59 d2bgwa1 not modelled 7.9 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 d1ivsa2 not modelled 7.7 22 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 61 d1ji6a1 not modelled 7.7 36 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 62 d1kona_ not modelled 7.7 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 63 d1fzda_ not modelled 7.4 17 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 64 d1qupa2 not modelled 7.4 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 65 c2j61B_ not modelled 7.4 26 PDB header:lectin Chain: B: PDB Molecule:ficolin-2; PDBTitle: l-ficolin complexed to n-acetylglucosamine (forme c) 66 c2kscA_ not modelled 7.3 13 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 67 c2janD_ not modelled 7.1 19 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 68 d1ffya1 not modelled 7.0 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 69 c3n0uB_ not modelled 6.9 21 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 70 d1iq0a3 not modelled 6.9 9 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 71 c2kyzA_ not modelled 6.8 24 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 72 d1wi9a_ not modelled 6.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 73 c2ifoA_ not modelled 6.7 25 PDB header:virus Chain: A: PDB Molecule:inovirus; PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme 74 c2i9sA_ not modelled 6.7 16 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: the solution structure of the core of mesoderm development2 (mesd). 75 d1ngka_ not modelled 6.6 16 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 76 d1o8ba2 not modelled 6.6 24 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 77 d1m0sa2 not modelled 6.6 10 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 78 c3mahA_ not modelled 6.6 15 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 79 d1lwub1 not modelled 6.5 13 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 80 d2o3aa1 not modelled 6.5 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 81 d1tama_ not modelled 6.5 27 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 82 d1m1ha2 not modelled 6.5 13 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 83 c2kddB_ not modelled 6.4 19 PDB header:cell cycle Chain: B: PDB Molecule:borealin; PDBTitle: solution structure of the conserved c-terminal dimerization2 domain of borealin 84 d1jkva_ not modelled 6.4 5 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 85 d1m1jc1 not modelled 6.3 30 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 86 d1s69a_ not modelled 6.3 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 87 d1rzsa_ not modelled 6.3 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 88 d1lk5a2 not modelled 6.2 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 89 c3aq8A_ not modelled 6.2 22 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 90 c3ofgA_ not modelled 6.2 13 PDB header:chaperone Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1; PDBTitle: structured domain of caenorhabditis elegans bmy-1 91 c2e1cA_ not modelled 6.2 14 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 92 d1hiwa_ not modelled 6.1 29 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 93 c3ofeB_ not modelled 6.1 19 PDB header:chaperone Chain: B: PDB Molecule:ldlr chaperone boca; PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form 94 c1m0sA_ not modelled 6.0 17 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 95 c3dxsX_ not modelled 5.9 26 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 96 c1ph4A_ not modelled 5.9 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg 97 c1jb7A_ not modelled 5.9 21 PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex 98 d1vr6a1 not modelled 5.9 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 99 c1vcnA_ not modelled 5.9 13 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0