PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1ffya1

Fold library id	Fold	Superfamily	Family
d1ffya1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Links to external resources
Added to library: Tue Mar 16 13:42:49 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y R K I R N T L R F M L G N I N D F N P D T D S I P E S E L L E V D R Y L L N R L R E F T A S T I N N Y E N F D Y L N I Y Q E V Q N F I N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T
G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E L S N F Y L D Y G K D I L Y I E Q R D S H I R R S M Q T V L Y Q I L V D M T K L L A P I L V H T A E E V W S H T P H V K E E S V H L A D M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
T T T S T T S T T
S S S S G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P K V V E V D Q A L L D K W R T F M N L R D D V N R A L E T A R N E K V I G K S L E A K V T I A S N D K F N A S E F L T S F D A L H Q L F I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S G G G
S S
G G G
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . .

Sequence V S Q V K V V D K L D D Q A T A Y E H G D I V I E H A D G E K C E R C W N Y S E D L G A V D E L T H L C P R C Q Q V V K S L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T S T T
S S
T T T
S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	R	K	I	R	N	T	L	R	F	M	L	G	N	I	N	D	F	N	P	D	T	D	S	I	P	E	S	E	L	L	E	V	D	R	Y	L	L	N	R	L	R	E	F	T	A	S	T	I	N	N	Y	E	N	F	D	Y	L	N	I	Y	Q	E	V	Q	N	F	I	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S	T	T										G	G	G	S																								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	L	S	N	F	Y	L	D	Y	G	K	D	I	L	Y	I	E	Q	R	D	S	H	I	R	R	S	M	Q	T	V	L	Y	Q	I	L	V	D	M	T	K	L	L	A	P	I	L	V	H	T	A	E	E	V	W	S	H	T	P	H	V	K	E	E	S	V	H	L	A	D	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S		T	T																							T	T	T	S									T	T	S	T	T		S	S	S	S	G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	K	V	V	E	V	D	Q	A	L	L	D	K	W	R	T	F	M	N	L	R	D	D	V	N	R	A	L	E	T	A	R	N	E	K	V	I	G	K	S	L	E	A	K	V	T	I	A	S	N	D	K	F	N	A	S	E	F	L	T	S	F	D	A	L	H	Q	L	F	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T	T	S		S	S	G	G	G									S	S							G	G	G		S						T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence	V	S	Q	V	K	V	V	D	K	L	D	D	Q	A	T	A	Y	E	H	G	D	I	V	I	E	H	A	D	G	E	K	C	E	R	C	W	N	Y	S	E	D	L	G	A	V	D	E	L	T	H	L	C	P	R	C	Q	Q	V	V	K	S	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S						S				T	T	S				T	T									S	S				T	T	T					S						T	T														T	T