Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	V	R	Q	H	G	W	R	A	I	P	A	V	C	S	E	Y	G	A	D	T	L	P	D	R	Y	R	S	D	G	R	C	L	L	F	W	Q	Q	A	G	I	S	A	L	K	Q	E	L	E	V	K	T	P	Y	R	A	M	N
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?																																		?		?			?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Sequence		H	P	V	I	G	V	V	T	K	A	D	L	A	S	M	E	Q	I	S	L	V	K	S	W	L	R	E	A	G	A	H	N	V	L	V	T	S	A	V	N	N	N	G	V	T	E	L	F	A	L	L	H	T	E	E	G	C	C
Secondary structure
SS confidence
Disorder													?	?	?																																							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qth chain A Region: 10 - 113 Aligned: 104 Modelled: 104 Confidence: 99.3% Identity: 16% PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp Phyre2 PDB 2e87 chain A Region: 1 - 113 Aligned: 107 Modelled: 113 Confidence: 99.2% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1320; PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp Phyre2 PDB 2hjg chain A Region: 2 - 113 Aligned: 109 Modelled: 112 Confidence: 99.2% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein enga; PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp Phyre2 PDB 1lnz chain A Region: 8 - 113 Aligned: 103 Modelled: 106 Confidence: 99.2% Identity: 22% PDB header:cell cycle Chain: A: PDB Molecule:spo0b-associated gtp-binding protein; PDBTitle: structure of the obg gtp-binding protein Phyre2 PDB 1udx chain A Region: 18 - 113 Aligned: 94 Modelled: 96 Confidence: 99.2% Identity: 22% PDB header:protein binding Chain: A: PDB Molecule:the gtp-binding protein obg; PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8 Phyre2 PDB 4a2i chain V Region: 31 - 113 Aligned: 82 Modelled: 83 Confidence: 99.0% Identity: 17% PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Phyre2 PDB 2rcn chain A Region: 31 - 114 Aligned: 83 Modelled: 84 Confidence: 99.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 1mky chain A Region: 23 - 113 Aligned: 89 Modelled: 84 Confidence: 98.9% Identity: 15% PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains Phyre2 PDB 2yv5 chain A Region: 31 - 113 Aligned: 82 Modelled: 83 Confidence: 98.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 1puj chain A Region: 29 - 113 Aligned: 80 Modelled: 85 Confidence: 98.9% Identity: 21% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 PDB 1g7t chain A Region: 30 - 111 Aligned: 80 Modelled: 82 Confidence: 98.8% Identity: 24% PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp Phyre2 PDB 2ywf chain A Region: 17 - 111 Aligned: 92 Modelled: 95 Confidence: 98.8% Identity: 20% PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Phyre2 PDB 3izy chain P Region: 29 - 111 Aligned: 80 Modelled: 83 Confidence: 98.8% Identity: 19% PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 Phyre2 PDB 3cb4 chain D Region: 17 - 111 Aligned: 92 Modelled: 95 Confidence: 98.8% Identity: 21% PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa Phyre2 PDB 1kk3 chain A Region: 18 - 113 Aligned: 95 Modelled: 96 Confidence: 98.8% Identity: 15% PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Phyre2 PDB 2wsm chain B Region: 29 - 112 Aligned: 78 Modelled: 84 Confidence: 98.8% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb); PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus Phyre2 PDB 2plf chain A Region: 19 - 113 Aligned: 94 Modelled: 95 Confidence: 98.8% Identity: 18% PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. Phyre2 PDB 3iev chain A Region: 16 - 113 Aligned: 98 Modelled: 98 Confidence: 98.8% Identity: 13% PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna Phyre2 PDB 1u0l chain B Region: 31 - 111 Aligned: 80 Modelled: 81 Confidence: 98.8% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima Phyre2 PDB 1u0l chain A domain 2 Region: 31 - 111 Aligned: 81 Modelled: 81 Confidence: 98.7% Identity: 19% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: G proteins Phyre2 1 c2qthA_ 2 c2e87A_ 3 c2hjgA_ 4 c1lnzA_ 5 c1udxA_ 6 c4a2iV_ 7 c2rcnA_ 8 c1mkyA_ 9 c2yv5A_ 10 d1puja_ 11 c1g7tA_ 12 c2ywfA_ 13 c3izyP_ 14 c3cb4D_ 15 c1kk3A_ 16 c2wsmB_ 17 c2plfA_ 18 c3ievA_ 19 c1u0lB_ 20 d1u0la2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qthA_ 99.3 16 PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp 2 c2e87A_ 99.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1320; PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp 3 c2hjgA_ 99.2 17 PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein enga; PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp 4 c1lnzA_ 99.2 22 PDB header:cell cycle Chain: A: PDB Molecule:spo0b-associated gtp-binding protein; PDBTitle: structure of the obg gtp-binding protein 5 c1udxA_ 99.2 22 PDB header:protein binding Chain: A: PDB Molecule:the gtp-binding protein obg; PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8 6 c4a2iV_ 99.0 17 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 7 c2rcnA_ 99.0 17 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 8 c1mkyA_ 98.9 15 PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains 9 c2yv5A_ 98.9 20 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 10 d1puja_ 98.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 11 c1g7tA_ 98.8 24 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if2/eif5b; PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp 12 c2ywfA_ 98.8 20 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 13 c3izyP_ 98.8 19 PDB header:rna, ribosomal protein Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial; PDBTitle: mammalian mitochondrial translation initiation factor 2 14 c3cb4D_ 98.8 21 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 15 c1kk3A_ 98.8 15 PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ 16 c2wsmB_ 98.8 14 PDB header:metal binding protein Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb); PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus 17 c2plfA_ 98.8 18 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form. 18 c3ievA_ 98.8 13 PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna 19 c1u0lB_ 98.8 19 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 20 d1u0la2 98.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 21 c1t9hA_ not modelled 98.7 20 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 22 c1wf3A_ not modelled 98.7 14 PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8 23 c3degC_ not modelled 98.7 20 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 24 c3qq5A_ not modelled 98.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 25 c1wb1C_ not modelled 98.7 23 PDB header:protein synthesis Chain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp 26 c1xzqA_ not modelled 98.7 16 PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf 27 d1yrba1 not modelled 98.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 28 c1egaB_ not modelled 98.6 14 PDB header:hydrolase Chain: B: PDB Molecule:protein (gtp-binding protein era); PDBTitle: crystal structure of a widely conserved gtpase era 29 c3c5hA_ not modelled 98.6 21 PDB header:signaling protein Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap) 30 c1zo1I_ not modelled 98.5 25 PDB header:translation/rna Chain: I: PDB Molecule:translation initiation factor 2; PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex 31 c3lvrE_ not modelled 98.5 13 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 32 c3gehA_ not modelled 98.5 22 PDB header:hydrolase Chain: A: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn 33 d1t9ha2 not modelled 98.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 34 c3md0A_ not modelled 98.4 28 PDB header:transport protein Chain: A: PDB Molecule:arginine/ornithine transport system atpase; PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein) 35 d1svia_ not modelled 98.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 36 c3nxsA_ not modelled 98.3 21 PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp 37 d1puia_ not modelled 98.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 38 c3h2yA_ not modelled 98.2 24 PDB header:hydrolase Chain: A: PDB Molecule:gtpase family protein; PDBTitle: crystal structure of yqeh gtpase from bacillus anthracis with dgdp2 bound 39 c3ec1A_ not modelled 98.2 18 PDB header:hydrolase, signaling protein Chain: A: PDB Molecule:yqeh gtpase; PDBTitle: structure of yqeh gtpase from geobacillus stearothermophilus2 (an atnos1 / atnoa1 ortholog) 40 c3o47A_ not modelled 98.2 14 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 41 c2elfA_ not modelled 98.2 18 PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei 42 c1skqB_ not modelled 98.2 19 PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp 43 c3c5cC_ not modelled 98.2 16 PDB header:signaling protein Chain: C: PDB Molecule:ras-like protein 12; PDBTitle: crystal structure of human ras-like, family 12 protein in2 complex with gdp 44 d1m7ba_ not modelled 98.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 45 c1gwnA_ not modelled 98.2 19 PDB header:gtpase Chain: A: PDB Molecule:rho-related gtp-binding protein rhoe; PDBTitle: the crystal structure of the core domain of rhoe/rnd3 - a2 constitutively activated small g protein 46 d2atxa1 not modelled 98.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 47 c2wkqA_ not modelled 98.2 23 PDB header:transferase, cell adhesion Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant 48 c2bvnB_ not modelled 98.2 18 PDB header:elongation factor Chain: B: PDB Molecule:elongation factor tu; PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia 49 d1yzga1 not modelled 98.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 50 c2x77B_ not modelled 98.1 12 PDB header:gtp-binding protein Chain: B: PDB Molecule:adp-ribosylation factor; PDBTitle: crystal structure of leishmania major adp ribosylation2 factor-like 1. 51 c1d2eA_ not modelled 98.1 20 PDB header:rna binding protein Chain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp 52 d2p67a1 not modelled 98.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 53 d1ky3a_ not modelled 98.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 54 c2h57A_ not modelled 98.1 14 PDB header:transport protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 6; PDBTitle: crystal structure of human adp-ribosylation factor-like 6 55 c2rexD_ not modelled 98.1 18 PDB header:signaling protein/lipoprotein Chain: D: PDB Molecule:rho-related gtp-binding protein rho6; PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase 56 d1moza_ not modelled 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 57 d1zj6a1 not modelled 98.0 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 58 c2wwwB_ not modelled 98.0 20 PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein 59 d2ngra_ not modelled 98.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 60 c3t1tC_ not modelled 98.0 17 PDB header:hydrolase Chain: C: PDB Molecule:gliding protein mgla; PDBTitle: mgla bound to gdp in p1 tetrameric arrangement 61 c1g7cA_ not modelled 98.0 16 PDB header:translation Chain: A: PDB Molecule:elongation factor 1-alpha; PDBTitle: yeast eef1a:eef1ba in complex with gdpnp 62 c3bwdD_ not modelled 98.0 18 PDB header:plant protein Chain: D: PDB Molecule:rac-like gtp-binding protein arac6; PDBTitle: crystal structure of the plant rho protein rop5 63 d1ds6a_ not modelled 98.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 64 d1s0ua3 not modelled 98.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 65 d1z6xa1 not modelled 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 66 d2gjsa1 not modelled 97.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 67 d1vg8a_ not modelled 97.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 68 c3l82B_ not modelled 97.9 8 PDB header:cell cycle Chain: B: PDB Molecule:f-box only protein 4; PDBTitle: x-ray crystal structure of trf1 and fbx4 complex 69 c3cnlA_ not modelled 97.9 11 PDB header:signaling protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of gnp-bound ylqf from t. maritima 70 d1z2ca1 not modelled 97.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 71 d1udxa2 not modelled 97.9 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 72 d1byua_ not modelled 97.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 73 c3oesA_ not modelled 97.9 18 PDB header:hydrolase Chain: A: PDB Molecule:gtpase rhebl1; PDBTitle: crystal structure of the small gtpase rhebl1 74 d1r8sa_ not modelled 97.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 75 c2hdnJ_ not modelled 97.9 19 PDB header:translation Chain: J: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 76 d1f60a3 not modelled 97.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 77 c3pqcA_ not modelled 97.9 18 PDB header:hydrolase Chain: A: PDB Molecule:probable gtp-binding protein engb; PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp 78 c2g3yA_ not modelled 97.9 22 PDB header:signaling protein Chain: A: PDB Molecule:gtp-binding protein gem; PDBTitle: crystal structure of the human small gtpase gem 79 d2g3ya1 not modelled 97.9 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 80 c3agqA_ not modelled 97.8 24 PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii 81 d2c78a3 not modelled 97.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 82 c2h18A_ not modelled 97.8 13 PDB header:transport protein Chain: A: PDB Molecule:adp-ribosylation factor-like protein 8a; PDBTitle: structure of human adp-ribosylation factor-like 10b (arl10b) 83 d2bcgy1 not modelled 97.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 84 c2hf9A_ not modelled 97.8 11 PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:probable hydrogenase nickel incorporation PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form 85 c1s0uA_ not modelled 97.8 16 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo 86 d1i2ma_ not modelled 97.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 87 d1kk1a3 not modelled 97.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 88 c3mmpC_ not modelled 97.8 21 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 89 d1kmqa_ not modelled 97.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 90 d2qm8a1 not modelled 97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 91 d1jnya3 not modelled 97.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 92 c1m2oD_ not modelled 97.8 17 PDB header:protein transport/signaling protein Chain: D: PDB Molecule:gtp-binding protein sar1; PDBTitle: crystal structure of the sec23-sar1 complex 93 c2wjjB_ not modelled 97.8 13 PDB header:metal transport Chain: B: PDB Molecule:ferrous iron transport protein b homolog; PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii 94 d1z0aa1 not modelled 97.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 95 d2b6ha1 not modelled 97.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 96 d2qn6a3 not modelled 97.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 97 c2zejA_ not modelled 97.8 20 PDB header:transferase Chain: A: PDB Molecule:leucine-rich repeat kinase 2; PDBTitle: structure of the roc domain from the parkinson's disease-associated2 leucine-rich repeat kinase 2 reveals a dimeric gtpase 98 d1zd9a1 not modelled 97.8 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 99 d2al7a1 not modelled 97.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 100 d1x1ra1 not modelled 97.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 101 d2f9la1 not modelled 97.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 102 d2g6ba1 not modelled 97.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 103 d2a5da1 not modelled 97.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 104 c3cbqA_ not modelled 97.7 20 PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of the human rem2 gtpase with bound gdp 105 d1wmsa_ not modelled 97.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 106 d1zunb3 not modelled 97.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 107 c2j0vD_ not modelled 97.7 16 PDB header:nucleotide-binding protein Chain: D: PDB Molecule:rac-like gtp-binding protein arac7; PDBTitle: the crystal structure of arabidopsis thaliana rac7-rop9:2 the first ras superfamily gtpase from the plant kingdom 108 c3conA_ not modelled 97.7 20 PDB header:hydrolase Chain: A: PDB Molecule:gtpase nras; PDBTitle: crystal structure of the human nras gtpase bound with gdp 109 c2dykB_ not modelled 97.7 20 PDB header:ribosome Chain: B: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8 110 c3lx8A_ not modelled 97.7 13 PDB header:metal transport Chain: A: PDB Molecule:ferrous iron uptake transporter protein b; PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus 111 d1z0ja1 not modelled 97.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 112 d1fzqa_ not modelled 97.6 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 113 c2fg5A_ not modelled 97.6 23 PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-31; PDBTitle: crystal structure of human rab31 in complex with a gtp2 analogue 114 d2fg5a1 not modelled 97.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 115 d2qtvb1 not modelled 97.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 116 d1xzpa2 not modelled 97.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 117 c2nzjB_ not modelled 97.6 18 PDB header:signaling protein Chain: B: PDB Molecule:gtp-binding protein rem 1; PDBTitle: the crystal structure of rem1 in complex with gdp 118 c3clvA_ not modelled 97.6 17 PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c 119 d1yzna1 not modelled 97.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 120 c3a1wA_ not modelled 97.6 27 PDB header:transport protein Chain: A: PDB Molecule:iron(ii) transport protein b; PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0