Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP42641
DateThu Jan 5 12:02:02 GMT 2012
Unique Job IDa9cdac91c6154fa4

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1udxA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
Confidence and coverage
Confidence:100.0% Coverage: 97%
377 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWMEADENLNTLIDYR
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Disorder  ?????
















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   .........70.........80.........90.........100.........110.........120
Sequence  FEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKG
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Disorder 





????????????????





































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   .........130.........140.........150.........160.........170.........180
Sequence  GWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVS
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Disorder 









?????





????????????????
?
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?
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   .........190.........200.........210.........220.........230.........240
Sequence  AAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRV
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Disorder  ?
??

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?


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   .........250.........260.........270.........280.........290.........300
Sequence  LLHLIDIDPIDGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAI
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   .........310.........320.........330.........340.........350.........360
Sequence  AEALGWEDKYYLISAASGLGVKDLCWDVMTFIIENPVVQAEEAKQPEKVEFMWDDYHRQQ
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   .........370.........380.........390
Sequence  LEEIAEEDDEDWDDDWDEDDEEGVEFIYKR
Secondary structure 




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Disorder 





?










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???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1udx chain A

3D model

Region: 3 - 390
Aligned: 377
Modelled: 388
Confidence: 100.0%
Identity: 41%
PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8

Phyre2

PDB 1lnz chain A

3D model

Region: 3 - 345
Aligned: 340
Modelled: 343
Confidence: 100.0%
Identity: 48%
PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein

Phyre2

PDB 1lnz chain A domain 1

3D model

Region: 3 - 158
Aligned: 156
Modelled: 156
Confidence: 100.0%
Identity: 52%
Fold: Obg-fold
Superfamily: Obg GTP-binding protein N-terminal domain
Family: Obg GTP-binding protein N-terminal domain

Phyre2

PDB 1udx chain A domain 1

3D model

Region: 3 - 158
Aligned: 155
Modelled: 156
Confidence: 100.0%
Identity: 49%
Fold: Obg-fold
Superfamily: Obg GTP-binding protein N-terminal domain
Family: Obg GTP-binding protein N-terminal domain

Phyre2

PDB 2e87 chain A

3D model

Region: 162 - 334
Aligned: 165
Modelled: 173
Confidence: 100.0%
Identity: 25%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 3iev chain A

3D model

Region: 162 - 381
Aligned: 212
Modelled: 220
Confidence: 100.0%
Identity: 23%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 1ni3 chain A

3D model

Region: 162 - 333
Aligned: 172
Modelled: 172
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:ychf gtp-binding protein;
PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase

Phyre2

PDB 1wf3 chain A

3D model

Region: 162 - 381
Aligned: 209
Modelled: 220
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8

Phyre2

PDB 1ega chain B

3D model

Region: 162 - 381
Aligned: 211
Modelled: 220
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era

Phyre2

PDB 1jal chain A

3D model

Region: 162 - 333
Aligned: 162
Modelled: 172
Confidence: 100.0%
Identity: 34%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)

Phyre2

PDB 1xzq chain A

3D model

Region: 162 - 389
Aligned: 212
Modelled: 228
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 1ni3 chain A domain 1

3D model

Region: 162 - 352
Aligned: 177
Modelled: 191
Confidence: 99.9%
Identity: 23%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1mky chain A

3D model

Region: 160 - 347
Aligned: 161
Modelled: 173
Confidence: 99.9%
Identity: 19%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 2qth chain A

3D model

Region: 155 - 334
Aligned: 165
Modelled: 180
Confidence: 99.9%
Identity: 17%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp

Phyre2

PDB 2dwq chain B

3D model

Region: 162 - 333
Aligned: 156
Modelled: 172
Confidence: 99.9%
Identity: 32%
PDB header:hydrolase
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: thermus thermophilus ychf gtp-binding protein

Phyre2

PDB 3k53 chain B

3D model

Region: 158 - 388
Aligned: 214
Modelled: 231
Confidence: 99.9%
Identity: 22%
PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus

Phyre2

PDB 3geh chain A

3D model

Region: 162 - 389
Aligned: 192
Modelled: 209
Confidence: 99.9%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn

Phyre2

PDB 1lnz chain A domain 2

3D model

Region: 159 - 345
Aligned: 184
Modelled: 187
Confidence: 99.9%
Identity: 45%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1jal chain A domain 1

3D model

Region: 162 - 389
Aligned: 223
Modelled: 228
Confidence: 99.9%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 3a1v chain B

3D model

Region: 162 - 385
Aligned: 204
Modelled: 224
Confidence: 99.9%
Identity: 19%
PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form

Phyre2
1

c1udxA_
2

c1lnzA_
3

d1lnza1
4

d1udxa1
5

c2e87A_
6

c3ievA_
7

c1ni3A_
8

c1wf3A_
9

c1egaB_
10

c1jalA_
11

c1xzqA_
12

d1ni3a1
13

c1mkyA_
14

c2qthA_
15

c2dwqB_
16

c3k53B_
17

c3gehA_
18

d1lnza2
19

d1jala1
20

c3a1vB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1udxA_



100.0 41 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
2c1lnzA_



100.0 48 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
3d1lnza1



100.0 52 Fold:Obg-fold
Superfamily:Obg GTP-binding protein N-terminal domain
Family:Obg GTP-binding protein N-terminal domain
4d1udxa1



100.0 49 Fold:Obg-fold
Superfamily:Obg GTP-binding protein N-terminal domain
Family:Obg GTP-binding protein N-terminal domain
5c2e87A_



100.0 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
6c3ievA_



100.0 23 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
7c1ni3A_



100.0 31 PDB header:hydrolase
Chain: A: PDB Molecule:ychf gtp-binding protein;
PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase
8c1wf3A_



100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
9c1egaB_



100.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
10c1jalA_



100.0 34 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
11c1xzqA_



99.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
12d1ni3a1



99.9 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
13c1mkyA_



99.9 19 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
14c2qthA_



99.9 17 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
15c2dwqB_



99.9 32 PDB header:hydrolase
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: thermus thermophilus ychf gtp-binding protein
16c3k53B_



99.9 22 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
17c3gehA_



99.9 23 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
18d1lnza2



99.9 45 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
19d1jala1



99.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
20c3a1vB_



99.9 19 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
21c2hjgA_



not modelled 99.9 23 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
22c2ohfA_



not modelled 99.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein 9;
PDBTitle: crystal structure of human ola1 in complex with amppcp
23c3lx8A_



not modelled 99.9 16 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
24c3ibyA_



not modelled 99.9 15 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
25d2bv3a2



not modelled 99.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
26c3i8sC_



not modelled 99.9 13 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
27d1wxqa1



not modelled 99.9 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
28c3md0A_



not modelled 99.9 18 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
29c1kk3A_



not modelled 99.9 22 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
30c1wb1C_



not modelled 99.9 19 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
31c2wwwB_



not modelled 99.9 20 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
32c3nxsA_



not modelled 99.9 21 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
33d1udxa2



not modelled 99.9 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
34c3qq5A_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
35c3izyP_



not modelled 99.8 19 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
36c1wxqA_



not modelled 99.8 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3
37d2p67a1



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
38d2dy1a2



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
39d2qm8a1



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
40c2xtpA_



not modelled 99.8 13 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
41c3degC_



not modelled 99.8 19 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
42c2qu8A_



not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
43c2plfA_



not modelled 99.8 17 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
44c3t1tC_



not modelled 99.8 19 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
45c2ywfA_



not modelled 99.8 21 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
46d1svia_



not modelled 99.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
47d1egaa1



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
48c1zo1I_



not modelled 99.8 19 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
49c3r7wC_



not modelled 99.8 17 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
50d2cxxa1



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
51c1g7tA_



not modelled 99.8 22 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
52d1tq4a_



not modelled 99.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53c2bvnB_



not modelled 99.8 18 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
54d1wf3a1



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
55c3o47A_



not modelled 99.8 20 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
56c2wsmB_



not modelled 99.8 14 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
57c3lxwA_



not modelled 99.8 16 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
58d1kk1a3



not modelled 99.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
59d1puia_



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
60d1h65a_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
61c2wjjB_



not modelled 99.7 23 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
62c2xtnA_



not modelled 99.7 13 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
63c2j3eA_



not modelled 99.7 20 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
64c3pqcA_



not modelled 99.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
65d1zunb3



not modelled 99.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
66c3lxxA_



not modelled 99.7 18 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
67d1yrba1



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
68c3p1jC_



not modelled 99.7 14 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
69d1d2ea3



not modelled 99.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
70d1wb1a4



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
71c2dykB_



not modelled 99.7 20 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
72c2qptA_



not modelled 99.7 19 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
73c1d2eA_



not modelled 99.7 20 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
74d2c78a3



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
75c3a1wA_



not modelled 99.7 20 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
76c2hf9A_



not modelled 99.7 16 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
77c3lvrE_



not modelled 99.7 19 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
78c2elfA_



not modelled 99.7 13 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
79d1f60a3



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
80d1jnya3



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
81d2fh5b1



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
82d2gj8a1



not modelled 99.7 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
83c2q3fB_



not modelled 99.7 17 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
84c1skqB_



not modelled 99.7 14 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
85c3p1jB_



not modelled 99.7 13 PDB header:hydrolase
Chain: B: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
86c1mj1A_



not modelled 99.7 17 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
87d1mkya1



not modelled 99.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
88c2wkqA_



not modelled 99.6 20 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
89d2qn6a3



not modelled 99.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
90c1s0uA_



not modelled 99.6 20 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
91c2dy1A_



not modelled 99.6 21 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
92d1nrjb_



not modelled 99.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
93d1s0ua3



not modelled 99.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94c1zunB_



not modelled 99.6 22 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
95d1mkya2



not modelled 99.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
96c2qagC_



not modelled 99.6 16 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
97c2qa5A_



not modelled 99.6 23 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
98c2h5eB_



not modelled 99.6 22 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
99d1r5ba3



not modelled 99.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100c3c5hA_



not modelled 99.6 16 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
101c3p27A_



not modelled 99.6 21 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
102d1efca3



not modelled 99.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103d1g7sa4



not modelled 99.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104c2h57A_



not modelled 99.6 18 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 6;
PDBTitle: crystal structure of human adp-ribosylation factor-like 6
105d1zcaa2



not modelled 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
106c3geiB_



not modelled 99.5 18 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
107d2bcgy1



not modelled 99.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108d1n0ua2



not modelled 99.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
109c2bm0A_



not modelled 99.5 21 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
110d1x3sa1



not modelled 99.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
111d1fzqa_



not modelled 99.5 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
112c2rexD_



not modelled 99.5 12 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
113d1shza2



not modelled 99.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
114d2g3ya1



not modelled 99.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115c2g3yA_



not modelled 99.5 15 PDB header:signaling protein
Chain: A: PDB Molecule:gtp-binding protein gem;
PDBTitle: crystal structure of the human small gtpase gem
116c2oilA_



not modelled 99.5 17 PDB header:protein transport
Chain: A: PDB Molecule:ras-related protein rab-25;
PDBTitle: crystal structure of human rab25 in complex with gdp
117c2xexA_



not modelled 99.5 20 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
118d1zj6a1



not modelled 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
119c3cbqA_



not modelled 99.5 18 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein rem 2;
PDBTitle: crystal structure of the human rem2 gtpase with bound gdp
120d1vg8a_



not modelled 99.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0