Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39163
DateThu Jan 5 11:58:18 GMT 2012
Unique Job IDa344c022454339fd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2rbhA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyl cyclotransferase;
PDBTitle: gamma-glutamyl cyclotransferase
Confidence and coverage
Confidence: 99.9% Coverage: 68%
158 residues ( 68% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDEGPVWIFGYGSLMWNPA
Secondary structure 
































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Disorder  ???


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   .........70.........80.........90.........100.........110.........120
Sequence  LEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTTGVAYRLPEETLEQEL
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   .........130.........140.........150.........160.........170.........180
Sequence  TLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDPRHPEYESDTRAQVIAPLIAAASG
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   .........190.........200.........210.........220.........230.
Sequence  PLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLAENFPDGVLRPGFA
Secondary structure 























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Disorder 



















?















?

???????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2rbh chain A

3D model

Region: 44 - 212
Aligned: 158
Modelled: 169
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyl cyclotransferase;
PDBTitle: gamma-glutamyl cyclotransferase

Phyre2

PDB 2qik chain A

3D model

Region: 42 - 200
Aligned: 142
Modelled: 159
Confidence: 99.7%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0131 protein ykqa;
PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast2 structural genomics target sr631

Phyre2

PDB 2g0q chain A

3D model

Region: 40 - 197
Aligned: 134
Modelled: 149
Confidence: 98.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g39720.1 protein;
PDBTitle: solution structure of at5g39720.1 from arabidopsis thaliana

Phyre2

PDB 2jqv chain A

3D model

Region: 39 - 197
Aligned: 136
Modelled: 159
Confidence: 98.6%
Identity: 16%
PDB header:structural genomics
Chain: A: PDB Molecule:aig2 protein-like;
PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana

Phyre2

PDB 1xhs chain A

3D model

Region: 47 - 161
Aligned: 94
Modelled: 115
Confidence: 98.5%
Identity: 19%
Fold: Gamma-glutamyl cyclotransferase-like
Superfamily: Gamma-glutamyl cyclotransferase-like
Family: Gamma-glutamyl cyclotransferase-like

Phyre2

PDB 3jub chain A

3D model

Region: 49 - 163
Aligned: 109
Modelled: 109
Confidence: 98.2%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:aig2-like domain-containing protein 1;
PDBTitle: human gamma-glutamylamine cyclotransferase

Phyre2

PDB 1vkb chain A

3D model

Region: 49 - 163
Aligned: 111
Modelled: 111
Confidence: 98.1%
Identity: 23%
Fold: Gamma-glutamyl cyclotransferase-like
Superfamily: Gamma-glutamyl cyclotransferase-like
Family: Gamma-glutamyl cyclotransferase-like

Phyre2

PDB 1v30 chain A

3D model

Region: 46 - 158
Aligned: 90
Modelled: 109
Confidence: 97.3%
Identity: 19%
Fold: Gamma-glutamyl cyclotransferase-like
Superfamily: Gamma-glutamyl cyclotransferase-like
Family: Gamma-glutamyl cyclotransferase-like

Phyre2

PDB 2x8q chain A

3D model

Region: 154 - 213
Aligned: 58
Modelled: 60
Confidence: 55.1%
Identity: 10%
PDB header:virus
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: cryo-em 3d model of the icosahedral particle2 composed of rous sarcoma virus capsid protein pentamers

Phyre2

PDB 1em9 chain A

3D model

Region: 154 - 213
Aligned: 58
Modelled: 60
Confidence: 54.9%
Identity: 10%
Fold: Retrovirus capsid protein, N-terminal core domain
Superfamily: Retrovirus capsid protein, N-terminal core domain
Family: Retrovirus capsid protein, N-terminal core domain

Phyre2

PDB 2kgf chain A

3D model

Region: 151 - 213
Aligned: 62
Modelled: 63
Confidence: 47.3%
Identity: 16%
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus

Phyre2

PDB 2c2z chain B

3D model

Region: 183 - 220
Aligned: 38
Modelled: 38
Confidence: 44.8%
Identity: 21%
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:caspase-8 p10 subunit;
PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor

Phyre2

PDB 3edy chain A

3D model

Region: 154 - 202
Aligned: 42
Modelled: 49
Confidence: 36.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1

Phyre2

PDB 1p7n chain A

3D model

Region: 150 - 213
Aligned: 62
Modelled: 64
Confidence: 35.6%
Identity: 11%
Fold: Retrovirus capsid protein, N-terminal core domain
Superfamily: Retrovirus capsid protein, N-terminal core domain
Family: Retrovirus capsid protein, N-terminal core domain

Phyre2

PDB 3ee6 chain A

3D model

Region: 154 - 202
Aligned: 42
Modelled: 49
Confidence: 35.4%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure analysis of tripeptidyl peptidase -i

Phyre2

PDB 3m66 chain A

3D model

Region: 165 - 220
Aligned: 56
Modelled: 56
Confidence: 34.5%
Identity: 7%
PDB header:transcription
Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial;
PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3

Phyre2

PDB 1bds chain A

3D model

Region: 39 - 58
Aligned: 20
Modelled: 20
Confidence: 33.9%
Identity: 35%
Fold: Defensin-like
Superfamily: Defensin-like
Family: Defensin

Phyre2

PDB 1gk8 chain I

3D model

Region: 162 - 191
Aligned: 19
Modelled: 30
Confidence: 28.4%
Identity: 21%
Fold: RuBisCO, small subunit
Superfamily: RuBisCO, small subunit
Family: RuBisCO, small subunit

Phyre2

PDB 1d1d chain A domain 2

3D model

Region: 165 - 213
Aligned: 48
Modelled: 49
Confidence: 26.5%
Identity: 10%
Fold: Retrovirus capsid protein, N-terminal core domain
Superfamily: Retrovirus capsid protein, N-terminal core domain
Family: Retrovirus capsid protein, N-terminal core domain

Phyre2

PDB 2cve chain A domain 2

3D model

Region: 106 - 142
Aligned: 37
Modelled: 37
Confidence: 24.4%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: EF-G C-terminal domain-like
Family: YigZ C-terminal domain-like

Phyre2
1

c2rbhA_
2

c2qikA_
3

c2g0qA_
4

c2jqvA_
5

d1xhsa_
6

c3jubA_
7

d1vkba_
8

d1v30a_
9

c2x8qA_
10

d1em9a_
11

c2kgfA_
12

c2c2zB_
13

c3edyA_
14

d1p7na_
15

c3ee6A_
16

c3m66A_
17

d1bdsa_
18

d1gk8i_
19

d1d1da2
20

d2cvea2
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rbhA_



99.9 16 PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyl cyclotransferase;
PDBTitle: gamma-glutamyl cyclotransferase
2c2qikA_



99.7 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0131 protein ykqa;
PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast2 structural genomics target sr631
3c2g0qA_



98.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g39720.1 protein;
PDBTitle: solution structure of at5g39720.1 from arabidopsis thaliana
4c2jqvA_



98.6 16 PDB header:structural genomics
Chain: A: PDB Molecule:aig2 protein-like;
PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana
5d1xhsa_



98.5 19 Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
6c3jubA_



98.2 20 PDB header:transferase
Chain: A: PDB Molecule:aig2-like domain-containing protein 1;
PDBTitle: human gamma-glutamylamine cyclotransferase
7d1vkba_



98.1 23 Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
8d1v30a_



97.3 19 Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
9c2x8qA_



55.1 10 PDB header:virus
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: cryo-em 3d model of the icosahedral particle2 composed of rous sarcoma virus capsid protein pentamers
10d1em9a_



54.9 10 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
11c2kgfA_



47.3 16 PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus
12c2c2zB_



44.8 21 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:caspase-8 p10 subunit;
PDBTitle: crystal structure of caspase-8 in complex with aza-peptide michael2 acceptor inhibitor
13c3edyA_



36.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1
14d1p7na_



35.6 11 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
15c3ee6A_



35.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure analysis of tripeptidyl peptidase -i
16c3m66A_



34.5 7 PDB header:transcription
Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial;
PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3
17d1bdsa_



33.9 35 Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
18d1gk8i_



28.4 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
19d1d1da2



26.5 10 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
20d2cvea2



24.4 24 Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:YigZ C-terminal domain-like
21d2plga1



not modelled 22.5 44 Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Tll0839-like
22d1mpga1



not modelled 22.2 21 Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
23d1fp2a1



not modelled 22.1 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
24d1wdds_



not modelled 21.7 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
25c2v4xA_



not modelled 21.5 8 PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain
26d2v6ai1



not modelled 20.6 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
27c2dwuA_



not modelled 20.1 16 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
28d1no5a_



not modelled 20.1 25 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
29d8ruci_



not modelled 19.1 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
30c2jfoB_



not modelled 19.0 16 PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate
31d1uzdc1



not modelled 18.7 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
32c1mpgB_



not modelled 18.4 21 PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii;
PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
33d1ej7s_



not modelled 18.2 21 Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
34c2qljB_



not modelled 17.6 23 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:caspase-7;
PDBTitle: crystal structure of caspase-7 with inhibitor ac-wehd-cho
35c3c7bA_



not modelled 17.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
36d1t1ea2



not modelled 16.3 10 Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
37d1mm0a_



not modelled 15.9 56 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Insect defensins
38c1b74A_



not modelled 15.6 24 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: glutamate racemase from aquifex pyrophilus
39c3lehA_



not modelled 15.4 32 PDB header:transferase
Chain: A: PDB Molecule:putative hydroxymethylglutaryl-coa synthase;
PDBTitle: the crystal structure of smu.943c from streptococcus mutans ua159
40d1p17b_



not modelled 15.0 33 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
41c3hfrA_



not modelled 14.9 14 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes
42c1kmcB_



not modelled 14.6 23 PDB header:apoptosis/hydrolase
Chain: B: PDB Molecule:caspase-7;
PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex
43c3degC_



not modelled 14.5 16 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
44d1ucva_



not modelled 14.2 13 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
45c3nwuB_



not modelled 14.1 16 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease htra1;
PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
46d1pzma_



not modelled 14.1 33 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
47c2p2cD_



not modelled 14.0 24 PDB header:hydrolase
Chain: D: PDB Molecule:caspase-2;
PDBTitle: inhibition of caspase-2 by a designed ankyrin repeat2 protein (darpin)
48d2ibna1



not modelled 13.9 29 Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:MioX-like
49c2ohoA_



not modelled 13.8 27 PDB header:isomerase
Chain: A: PDB Molecule:glutamate racemase;
PDBTitle: structural basis for glutamate racemase inhibitor
50c3kopB_



not modelled 13.3 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution
51d1tc1a_



not modelled 13.3 33 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
52c3d0wD_



not modelled 13.3 24 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:yflh protein;
PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326
53d1riqa1



not modelled 12.8 21 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
54c2ywtA_



not modelled 12.2 33 PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: crystal structure of hypoxanthine-guanine2 phosphoribosyltransferase with gmp from thermus3 thermophilus hb8
55c3my3A_



not modelled 12.1 4 PDB header:transcription
Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial;
PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3
56d1y88a1



not modelled 11.8 14 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
57d2qf3a1



not modelled 11.6 13 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Prokaryotic proteases
58c2v4wB_



not modelled 11.5 32 PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase,
PDBTitle: crystal structure of human mitochondrial 3-hydroxy-3-2 methylglutaryl-coenzyme a synthase 2 (hmgcs2)
59c3n6sA_



not modelled 11.4 14 PDB header:transcription, replication/dna
Chain: A: PDB Molecule:transcription termination factor, mitochondrial;
PDBTitle: crystal structure of human mitochondrial mterf in complex with a 15-2 mer dna encompassing the trnaleu(uur) binding sequence
60c3kb8A_



not modelled 10.9 33 PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase;
PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp
61c1ru7B_



not modelled 10.8 28 PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: 1934 human h1 hemagglutinin
62c2c1eB_



not modelled 10.8 17 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:caspase-3 subunit p12;
PDBTitle: crystal structures of caspase-3 in complex with aza-peptide michael2 acceptor inhibitors.
63d1g9sa_



not modelled 10.8 33 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
64c2dl0A_



not modelled 10.7 16 PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
65c1x9eB_



not modelled 10.6 27 PDB header:lyase
Chain: B: PDB Molecule:hmg-coa synthase;
PDBTitle: crystal structure of hmg-coa synthase from enterococcus2 faecalis
66c2jfzB_



not modelled 10.5 16 PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
67c3bt6B_



not modelled 10.4 25 PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
68c3o7mD_



not modelled 10.4 50 PDB header:transferase
Chain: D: PDB Molecule:hypoxanthine phosphoribosyltransferase;
PDBTitle: 1.98 angstrom resolution crystal structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-2) from bacillus anthracis str. 'ames3 ancestor'
69c2h51B_



not modelled 10.3 6 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:caspase-1;
PDBTitle: crystal structure of human caspase-1 (glu390->asp and arg286->lys) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk)
70c2gzmB_



not modelled 10.0 16 PDB header:isomerase
Chain: B: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis
71c3outC_



not modelled 9.9 19 PDB header:isomerase
Chain: C: PDB Molecule:glutamate racemase;
PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate.
72d1fp1d1



not modelled 9.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
73d1pgw21



not modelled 9.6 40 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
74d1pgl21



not modelled 9.5 40 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
75d1ny721



not modelled 9.5 40 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
76c2jbhA_



not modelled 9.3 22 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosyltransferase domain-containing protein 1;
PDBTitle: human phosphoribosyl transferase domain containing 1
77d1hgxa_



not modelled 9.3 50 Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
78d1ccwa_



not modelled 9.2 10 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
79c2wrhI_



not modelled 9.2 28 PDB header:viral protein
Chain: I: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of h1 duck albert hemagglutinin with human2 receptor
80c1hgeD_



not modelled 9.1 22 PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin, (g135r), ha1 chain;
PDBTitle: binding of influenza virus hemagglutinin to analogs of its cell-2 surface receptor, sialic acid: analysis by proton nuclear magnetic3 resonance spectroscopy and x-ray crystallography
81c3s5oA_



not modelled 9.1 12 PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial;
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
82c3m5gD_



not modelled 9.1 28 PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a h7 influenza virus hemagglutinin
83c1jsdB_



not modelled 9.1 31 PDB header:viral protein
Chain: B: PDB Molecule:haemagglutinin (ha2 chain);
PDBTitle: crystal structure of swine h9 haemagglutinin
84c3sirD_



not modelled 9.1 23 PDB header:hydrolase
Chain: D: PDB Molecule:caspase;
PDBTitle: crystal structure of drice
85d1zs4a1



not modelled 9.1 26 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Bacteriophage CII protein
86c2ja9A_



not modelled 8.9 8 PDB header:rna-binding protein
Chain: A: PDB Molecule:exosome complex exonuclease rrp40;
PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40
87c2p8uB_



not modelled 8.8 45 PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, cytoplasmic;
PDBTitle: crystal structure of human 3-hydroxy-3-methylglutaryl coa synthase i
88d1f1ja_



not modelled 8.6 23 Fold:Caspase-like
Superfamily:Caspase-like
Family:Caspase catalytic domain
89c2d9xA_



not modelled 8.5 17 PDB header:lipid transport
Chain: A: PDB Molecule:oxysterol binding protein-related protein 11;
PDBTitle: solution structure of the ph domain of oxysterol binding2 protein-related protein 11 from human
90d1nu0a_



not modelled 8.4 35 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
91d1o5ka_



not modelled 8.3 28 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
92c2rq5A_



not modelled 8.3 21 PDB header:transcription
Chain: A: PDB Molecule:protein jumonji;
PDBTitle: solution structure of the at-rich interaction domain (arid)2 of jumonji/jarid2
93c3nziA_



not modelled 8.3 21 PDB header:hydrolase/hydrolase substrate
Chain: A: PDB Molecule:serine protease htra1;
PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
94c3h9xB_



not modelled 8.3 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein pspto_3016;
PDBTitle: crystal structure of the pspto_3016 protein from2 pseudomonas syringae, northeast structural genomics3 consortium target psr293
95c2funB_



not modelled 8.2 24 PDB header:apoptosis/hydrolase
Chain: B: PDB Molecule:caspase-8;
PDBTitle: alternative p35-caspase-8 complex
96c1htmB_



not modelled 8.2 22 PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion
97d2ia7a1



not modelled 7.9 20 Fold:gpW/gp25-like
Superfamily:gpW/gp25-like
Family:gpW/gp25-like
98c3n7qA_



not modelled 7.9 14 PDB header:transcription, replication/dna
Chain: A: PDB Molecule:transcription termination factor, mitochondrial;
PDBTitle: crystal structure of human mitochondrial mterf fragment (aa 99-399) in2 complex with a 12-mer dna encompassing the trnaleu(uur) binding3 sequence
99c1yfzA_



not modelled 7.9 33 PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0