PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3m66A_

Fold library id	PDB Header	Molecule	Title
c3m66A_	PDB header: transcription	Chain: A: PDB Molecule: mterf domain-containing protein 1, mitochondrial;	PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3

Links to external resources
Added to library: Sun Aug 29 00:56:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Y V D H S E T L Q K L V L L G V D L S K I E K H P E A A N L L L R L D F E K D I K Q M L L F L K D V G I E D N Q L G A F L T K N H A I F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S T
T T
G G G
T T G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E D L E N L K T R V A Y L H S K N F S K A D V A Q M V R K A P F L L N F S V E R L D N R L G F F Q K E L E L S V K K T R D L V V R L P R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S T T G G G S
S G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T G S L E P V K E N M K V Y R L E L G F K H N E I Q H M I T R I P K M L T A N K M K L T E T F D F V H N V M S I P H H I I V K F P Q V F N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S T S
G G G G T S
T T S
G G G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence R L F K V K E R H L F L T Y L G R A Q Y D P A K P N Y I S L D K L V S I P D E I F C E E I A K A S V Q D F E K F L K T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T S S S
S
T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Y	V	D	H	S	E	T	L	Q	K	L	V	L	L	G	V	D	L	S	K	I	E	K	H	P	E	A	A	N	L	L	L	R	L	D	F	E	K	D	I	K	Q	M	L	L	F	L	K	D	V	G	I	E	D	N	Q	L	G	A	F	L	T	K	N	H	A	I	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T							T	T	S									T							T											T			G	G	G									T	T	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	D	L	E	N	L	K	T	R	V	A	Y	L	H	S	K	N	F	S	K	A	D	V	A	Q	M	V	R	K	A	P	F	L	L	N	F	S	V	E	R	L	D	N	R	L	G	F	F	Q	K	E	L	E	L	S	V	K	K	T	R	D	L	V	V	R	L	P	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S															T	T													S	T	T	G	G	G	S																														S	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	G	S	L	E	P	V	K	E	N	M	K	V	Y	R	L	E	L	G	F	K	H	N	E	I	Q	H	M	I	T	R	I	P	K	M	L	T	A	N	K	M	K	L	T	E	T	F	D	F	V	H	N	V	M	S	I	P	H	H	I	I	V	K	F	P	Q	V	F	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S		S													T	S															G	G	G	G	T	S														T	T	S											G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	R	L	F	K	V	K	E	R	H	L	F	L	T	Y	L	G	R	A	Q	Y	D	P	A	K	P	N	Y	I	S	L	D	K	L	V	S	I	P	D	E	I	F	C	E	E	I	A	K	A	S	V	Q	D	F	E	K	F	L	K	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T						T	T	S	S	S										S									T	T		S										T	T