PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2x8qA_

Fold library id	PDB Header	Molecule	Title
c2x8qA_	PDB header: virus	Chain: A: PDB Molecule: capsid protein p27;	PDBTitle: cryo-em 3d model of the icosahedral particle2 composed of rous sarcoma virus capsid protein pentamers

Links to external resources
Added to library: Sat Aug 28 18:44:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P V V I K T E G P A W T P L E P K L I T R L A D T V R T K G L R S P I T M A E V E A L M S S P L L P H D V T N L M R V I L G P A P Y A L W M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
S T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A W G V Q L Q T V I A A A T R D P R H P A N G Q G R G E R T N L N R L K G L A D G M V G N P Q G Q A A L L R P G E L V A I T A S A L Q A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
S S G G G
T
S T T T S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R E V A R L A G P W A D I M Q G P S E S F V D F A N R L I K A V E G S D L P P S A R A P V I I D C F R Q K S Q P D I Q Q L I R T A P S T L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S
G G G S
S
G G G

. . . . . . . . . 220 . . .

Sequence T P G E I I K Y V L D R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	V	V	I	K	T	E	G	P	A	W	T	P	L	E	P	K	L	I	T	R	L	A	D	T	V	R	T	K	G	L	R	S	P	I	T	M	A	E	V	E	A	L	M	S	S	P	L	L	P	H	D	V	T	N	L	M	R	V	I	L	G	P	A	P	Y	A	L	W	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S																							T	T		S											T	S															S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	W	G	V	Q	L	Q	T	V	I	A	A	A	T	R	D	P	R	H	P	A	N	G	Q	G	R	G	E	R	T	N	L	N	R	L	K	G	L	A	D	G	M	V	G	N	P	Q	G	Q	A	A	L	L	R	P	G	E	L	V	A	I	T	A	S	A	L	Q	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S	S	S		S	S	G	G	G									T		S	T	T	T	S	S									S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	E	V	A	R	L	A	G	P	W	A	D	I	M	Q	G	P	S	E	S	F	V	D	F	A	N	R	L	I	K	A	V	E	G	S	D	L	P	P	S	A	R	A	P	V	I	I	D	C	F	R	Q	K	S	Q	P	D	I	Q	Q	L	I	R	T	A	P	S	T	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S						T	T																	S	S	S		G	G	G													S											S		G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	T	P	G	E	I	I	K	Y	V	L	D	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S