Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	E	Q	R	G	V	A	L	L	I	V	L	M	L	L	A	L	M	A	A	L	A	A	D	M	T	L	S	F	H	S	Q	L	Q	R	T	R	Q	V	N	H	H	L	Q	R	Q	Y	D	I	E	L	A	E	K	L	A	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	L	T	Q	D	V	K	D	N	D	R	Q	T	T	L	Q	Q	Y	W	A	Q	P	Q	Q	L	Q	L	E	D	G	N	T	V	K	W	Q	L	R	D	A	Q	H	C	F	N	L	N	A	L	A	K	I	S	D	D	P	L	A	S	P
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?	?	?	?											?																							?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	F	P	A	Q	V	F	S	A	L	L	I	N	A	G	I	D	R	G	N	T	D	E	I	V	Q	S	I	A	D	Y	I	D	V	D	D	S	P	R	F	H	G	A	E	D	S	F	Y	Q	S	Q	T	P	P	R	H	S	A	N	Q
Secondary structure
SS confidence
Disorder		?	?														?	?																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	L	F	L	T	G	E	L	R	Q	I	K	G	I	T	E	N	I	Y	Q	R	L	I	P	Y	V	C	V	L	P	T	T	E	L	S	I	N	L	N	M	L	T	E	N	D	I	P	L	F	R	A	L	F	L	N	N	I	T	D	A
Secondary structure
SS confidence
Disorder																																		?	?																			?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	A	R	V	L	L	Q	K	R	P	R	E	G	W	L	T	T	D	A	F	L	Y	W	A	Q	Q	D	F	S	G	V	K	P	L	V	A	Q	V	K	R	H	L	F	P	Y	S	R	Y	F	T	L	S	T	E	S	I	S	D	E	Q
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Sequence		S	Q	G	W	Q	S	H	I	F	F	N	R	K	Q	Q	S	A	Q	I	Y	R	R	T	L	Q	L	Y
Secondary structure
SS confidence
Disorder																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ci0 chain K Region: 37 - 325 Aligned: 276 Modelled: 289 Confidence: 100.0% Identity: 35% PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system Phyre2 PDB 3ci0 chain K domain 2 Region: 102 - 213 Aligned: 109 Modelled: 112 Confidence: 100.0% Identity: 38% Fold: SAM domain-like Superfamily: GspK insert domain-like Family: GspK insert domain-like Phyre2 PDB 3ci0 chain K domain 3 Region: 37 - 113 Aligned: 76 Modelled: 77 Confidence: 99.6% Identity: 28% Fold: Pili subunits Superfamily: Pili subunits Family: GspK pilin-like domain Phyre2 PDB 3ci0 chain K domain 1 Region: 214 - 285 Aligned: 63 Modelled: 72 Confidence: 99.0% Identity: 40% Fold: SAM domain-like Superfamily: GspK insert domain-like Family: GspK insert domain-like Phyre2 PDB 2duy chain A domain 1 Region: 210 - 262 Aligned: 45 Modelled: 53 Confidence: 97.2% Identity: 24% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: ComEA-like Phyre2 PDB 2edu chain A domain 1 Region: 215 - 260 Aligned: 41 Modelled: 46 Confidence: 96.4% Identity: 20% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: ComEA-like Phyre2 PDB 3bzk chain A domain 1 Region: 103 - 208 Aligned: 62 Modelled: 62 Confidence: 96.2% Identity: 24% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Tex HhH-containing domain-like Phyre2 PDB 1s5l chain U Region: 101 - 219 Aligned: 71 Modelled: 71 Confidence: 95.9% Identity: 21% PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center Phyre2 PDB 2axt chain U domain 1 Region: 101 - 206 Aligned: 58 Modelled: 58 Confidence: 95.7% Identity: 22% Fold: SAM domain-like Superfamily: PsbU/PolX domain-like Family: PsbU-like Phyre2 PDB 2oce chain A Region: 216 - 262 Aligned: 42 Modelled: 47 Confidence: 79.7% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa Phyre2 PDB 3sok chain B Region: 10 - 53 Aligned: 44 Modelled: 44 Confidence: 73.5% Identity: 18% PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima Phyre2 PDB 2i5h chain A Region: 233 - 262 Aligned: 30 Modelled: 30 Confidence: 66.1% Identity: 7% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 Phyre2 PDB 2i5h chain A domain 1 Region: 233 - 262 Aligned: 30 Modelled: 30 Confidence: 66.1% Identity: 7% Fold: AF1531-like Superfamily: AF1531-like Family: AF1531-like Phyre2 PDB 3f2c chain A Region: 235 - 263 Aligned: 29 Modelled: 29 Confidence: 60.5% Identity: 10% PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn Phyre2 PDB 1wg8 chain A domain 1 Region: 218 - 269 Aligned: 52 Modelled: 52 Confidence: 57.0% Identity: 19% Fold: SAM domain-like Superfamily: Putative methyltransferase TM0872, insert domain Family: Putative methyltransferase TM0872, insert domain Phyre2 PDB 8icz chain A Region: 142 - 262 Aligned: 114 Modelled: 121 Confidence: 50.6% Identity: 12% PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) Phyre2 PDB 2pil chain A Region: 10 - 60 Aligned: 51 Modelled: 51 Confidence: 49.3% Identity: 16% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 1oqw chain A Region: 10 - 58 Aligned: 49 Modelled: 49 Confidence: 41.4% Identity: 14% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 3e0d chain A Region: 235 - 262 Aligned: 28 Modelled: 28 Confidence: 38.9% Identity: 32% PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit Phyre2 PDB 1u5t chain A domain 1 Region: 105 - 193 Aligned: 77 Modelled: 77 Confidence: 38.7% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 1 c3ci0K_ 2 d3ci0k2 3 d3ci0k3 4 d3ci0k1 5 d2duya1 6 d2edua1 7 d3bzka1 8 c1s5lu_ 9 d2axtu1 10 c2oceA_ 11 c3sokB_ 12 c2i5hA_ 13 d2i5ha1 14 c3f2cA_ 15 d1wg8a1 16 c8iczA_ 17 d2pila_ 18 d1oqwa_ 19 c3e0dA_ 20 d1u5ta1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ci0K_ 100.0 35 PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system 2 d3ci0k2 100.0 38 Fold:SAM domain-like Superfamily:GspK insert domain-like Family:GspK insert domain-like 3 d3ci0k3 99.6 28 Fold:Pili subunits Superfamily:Pili subunits Family:GspK pilin-like domain 4 d3ci0k1 99.0 40 Fold:SAM domain-like Superfamily:GspK insert domain-like Family:GspK insert domain-like 5 d2duya1 97.2 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 6 d2edua1 96.4 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 7 d3bzka1 96.2 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 8 c1s5lu_ 95.9 21 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 9 d2axtu1 95.7 22 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 10 c2oceA_ 79.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 11 c3sokB_ 73.5 18 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 12 c2i5hA_ 66.1 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 13 d2i5ha1 66.1 7 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 14 c3f2cA_ 60.5 10 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 15 d1wg8a1 57.0 19 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 16 c8iczA_ 50.6 12 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 17 d2pila_ 49.3 16 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 18 d1oqwa_ 41.4 14 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 19 c3e0dA_ 38.9 32 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 20 d1u5ta1 38.7 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 21 c1wg8B_ not modelled 37.6 19 PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8. 22 d2bgwa1 not modelled 35.1 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 23 d2e1fa1 not modelled 31.8 21 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 24 c2bcuA_ not modelled 31.0 15 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 25 c2kp7A_ not modelled 29.1 13 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 26 d1ej5a_ not modelled 27.1 31 Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 27 c2jd3B_ not modelled 26.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:stbb protein; PDBTitle: parr from plasmid pb171 28 d1dgsa1 not modelled 26.4 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 29 c2ihmA_ not modelled 24.9 14 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 30 d1x2ia1 not modelled 24.5 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 31 d2fmpa1 not modelled 21.3 8 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 32 c1kdhA_ not modelled 19.6 14 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 33 d1kfta_ not modelled 19.0 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 34 c1kftA_ not modelled 19.0 13 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 35 d2a1jb1 not modelled 17.9 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 36 c1dgrW_ not modelled 17.2 9 PDB header:plant protein Chain: W: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 37 c1u5tA_ not modelled 16.9 16 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 38 c2hnhA_ not modelled 15.4 4 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 39 d1unca_ not modelled 15.1 18 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 40 c2x49A_ not modelled 14.6 15 PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva 41 c3s7eB_ not modelled 14.6 6 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 42 d1dk2a_ not modelled 14.1 8 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 43 c3al0B_ not modelled 13.7 15 PDB header:ligase/rna Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b; PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. 44 d1pzna1 not modelled 12.4 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 45 c3psiA_ not modelled 12.3 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 46 d1yu8x1 not modelled 12.0 14 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 47 c2rhfA_ not modelled 11.5 17 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 48 d2bcqa1 not modelled 11.2 18 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 49 c2ql5A_ not modelled 11.1 42 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7; PDBTitle: crystal structure of caspase-7 with inhibitor ac-dmqd-cho 50 c1i51A_ not modelled 11.1 42 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-7 subunit p20; PDBTitle: crystal structure of caspase-7 complexed with xiap 51 d2p6ra2 not modelled 10.8 19 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 52 d1d8ba_ not modelled 10.7 4 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 53 c3iuoA_ not modelled 10.6 12 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase recq; PDBTitle: the crystal structure of the c-terminal domain of the atp-dependent2 dna helicase recq from porphyromonas gingivalis to 1.6a 54 d1unda_ not modelled 10.5 18 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 55 c2eaaB_ not modelled 10.4 9 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 56 c3kscD_ not modelled 10.0 31 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 57 c3edqC_ not modelled 9.9 18 PDB header:hydrolase/hydrolase inhibitor Chain: C: PDB Molecule:caspase-3; PDBTitle: crystal structure of caspase-3 with inhibitor ac-ldesd-cho 58 c3c3vA_ not modelled 9.8 19 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 59 d1nzpa_ not modelled 9.8 17 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 60 c3psfA_ not modelled 9.5 14 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 61 d2jxca1 not modelled 9.3 10 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 62 d1jmsa1 not modelled 9.2 4 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 63 c2g5iB_ not modelled 8.8 12 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 64 c1i3oC_ not modelled 8.6 18 PDB header:apoptosis Chain: C: PDB Molecule:caspase 3; PDBTitle: crystal structure of the complex of xiap-bir2 and caspase 3 65 d2i1qa1 not modelled 8.5 35 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 66 d1wuda1 not modelled 8.0 16 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 67 c3pc3A_ not modelled 7.9 20 PDB header:lyase Chain: A: PDB Molecule:cg1753, isoform a; PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate 68 c2rrdA_ not modelled 7.8 29 PDB header:dna binding protein Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein; PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm 69 c3sirD_ not modelled 7.8 42 PDB header:hydrolase Chain: D: PDB Molecule:caspase; PDBTitle: crystal structure of drice 70 d1wgla_ not modelled 7.8 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 71 c2voyB_ not modelled 7.7 31 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 72 c1uijA_ not modelled 7.6 16 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 73 c1qduI_ not modelled 7.4 36 PDB header:hydrolase/hydrolase inhibitor Chain: I: PDB Molecule:caspase-8 alpha-chain; PDBTitle: crystal structure of the complex of caspase-8 with the tripeptide2 ketone inhibitor zevd-dcbmk 74 c2funB_ not modelled 7.4 42 PDB header:apoptosis/hydrolase Chain: B: PDB Molecule:caspase-8; PDBTitle: alternative p35-caspase-8 complex 75 c2cauA_ not modelled 7.3 9 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 76 d1uija2 not modelled 7.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 77 c1pyoA_ not modelled 7.2 36 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho 78 c3a5iB_ not modelled 7.1 16 PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha 79 d1vzva_ not modelled 7.0 38 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 80 c1wtjB_ not modelled 6.9 10 PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato 81 c3mydA_ not modelled 6.9 18 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori 82 c3i0pA_ not modelled 6.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica 83 c2e9qA_ not modelled 6.7 16 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 84 c2d5fB_ not modelled 6.7 9 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 85 c3h11A_ not modelled 6.6 27 PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex 86 d1u9la_ not modelled 6.6 30 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:NusA extra C-terminal domains 87 c3sipC_ not modelled 6.6 42 PDB header:hydrolase/ligase/hydrolase Chain: C: PDB Molecule:caspase; PDBTitle: crystal structure of drice and diap1-bir1 complex 88 d1luia_ not modelled 6.5 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 89 d1m6ya1 not modelled 6.5 20 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 90 c2g8yB_ not modelled 6.3 7 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 91 c3kglB_ not modelled 6.3 16 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 92 d1rvga_ not modelled 6.2 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 93 c2nn3D_ not modelled 6.2 42 PDB header:hydrolase Chain: D: PDB Molecule:caspase-1; PDBTitle: structure of pro-sf-caspase-1 94 d1b22a_ not modelled 6.2 16 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 95 c1b22A_ not modelled 6.2 16 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 96 d1uika2 not modelled 6.1 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 97 c3nn4C_ not modelled 6.1 37 PDB header:oxidoreductase Chain: C: PDB Molecule:chlorite dismutase; PDBTitle: structure of chlorite dismutase from candidatus nitrospira defluvii2 r173k mutant 98 c2k42A_ not modelled 6.1 37 PDB header:signaling protein Chain: A: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector 99 c3p45I_ not modelled 6.1 45 PDB header:hydrolase Chain: I: PDB Molecule:caspase-6; PDBTitle: crystal structure of apo-caspase-6 at physiological ph

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0