Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	S	R	L	T	V	F	S	F	V	R	R	F	L	L	R	L	M	V	V	L	A	V	F	W	G	G	G	I	A	L	F	S	V	A	P	V	P	F	S	A	V	M	V	E	R	Q	V	S	A	W	L	H	G	N	F	R	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																		?	?	?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	H	S	D	W	V	S	M	D	Q	I	S	P	W	M	G	L	A	V	I	A	A	E	D	Q	K	F	P	E	H	W	G	F	D	V	A	S	I	E	K	A	L	A	H	N	E	R	N	E	N	R	I	R	G	A	S	T	I	S
Secondary structure
SS confidence
Disorder		?		?																																															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	Q	T	A	K	N	L	F	L	W	D	G	R	S	W	V	R	K	G	L	E	A	G	L	T	L	G	I	E	T	V	W	S	K	K	R	I	L	T	V	Y	L	N	I	A	E	F	G	D	G	V	F	G	V	E	A	A	A	Q	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	F	H	K	P	A	S	K	L	T	R	S	E	A	A	L	L	A	A	V	L	P	N	P	L	R	F	K	V	S	S	P	S	G	Y	V	R	S	R	Q	A	W	I	L	R	Q	M	Y	Q	L	G	G	E	P	F	M	Q	Q	H	Q
Secondary structure
SS confidence
Disorder																																																					?	?	?	?	?	?
Disorder confidence
		.	.
Sequence		L	D
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3dwk chain C Region: 46 - 242 Aligned: 194 Modelled: 197 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer Phyre2 PDB 2olv chain A Region: 45 - 242 Aligned: 186 Modelled: 198 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex Phyre2 PDB 3hzs chain A Region: 62 - 242 Aligned: 177 Modelled: 181 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin Phyre2 PDB 2oqo chain A domain 1 Region: 62 - 242 Aligned: 172 Modelled: 181 Confidence: 100.0% Identity: 40% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: PBP transglycosylase domain-like Phyre2 PDB 2olu chain A domain 1 Region: 45 - 242 Aligned: 178 Modelled: 198 Confidence: 100.0% Identity: 30% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: PBP transglycosylase domain-like Phyre2 PDB 3fwl chain A Region: 62 - 242 Aligned: 159 Modelled: 161 Confidence: 100.0% Identity: 30% PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Phyre2 PDB 3udi chain A Region: 49 - 242 Aligned: 131 Modelled: 134 Confidence: 100.0% Identity: 32% PDB header:penicillin-binding protein/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 1a; PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g Phyre2 PDB 2wad chain B Region: 51 - 231 Aligned: 172 Modelled: 181 Confidence: 98.5% Identity: 7% PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Phyre2 PDB 1pmd chain A Region: 131 - 212 Aligned: 78 Modelled: 82 Confidence: 90.7% Identity: 13% PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) Phyre2 PDB 1mv8 chain A domain 1 Region: 71 - 120 Aligned: 50 Modelled: 50 Confidence: 49.4% Identity: 16% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain Phyre2 PDB 1dlj chain A domain 1 Region: 71 - 120 Aligned: 50 Modelled: 50 Confidence: 37.4% Identity: 16% Fold: 6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like Family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain Phyre2 PDB 3zri chain A Region: 73 - 127 Aligned: 55 Modelled: 55 Confidence: 28.4% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:clpb protein; PDBTitle: n-domain of clpv from vibrio cholerae Phyre2 PDB 1qvr chain A domain 1 Region: 73 - 127 Aligned: 55 Modelled: 55 Confidence: 28.3% Identity: 15% Fold: Double Clp-N motif Superfamily: Double Clp-N motif Family: Double Clp-N motif Phyre2 PDB 2iea chain A domain 3 Region: 89 - 125 Aligned: 36 Modelled: 37 Confidence: 27.7% Identity: 17% Fold: TK C-terminal domain-like Superfamily: TK C-terminal domain-like Family: Transketolase C-terminal domain-like Phyre2 PDB 2guk chain A domain 1 Region: 165 - 201 Aligned: 36 Modelled: 35 Confidence: 27.1% Identity: 25% Fold: PG1857-like Superfamily: PG1857-like Family: PG1857-like Phyre2 PDB 2k77 chain A Region: 73 - 127 Aligned: 55 Modelled: 55 Confidence: 26.9% Identity: 11% PDB header:chaperone, protein binding Chain: A: PDB Molecule:negative regulator of genetic competence PDBTitle: nmr solution structure of the bacillus subtilis clpc n-2 domain Phyre2 PDB 3fes chain B Region: 73 - 127 Aligned: 55 Modelled: 55 Confidence: 26.3% Identity: 22% PDB header:atp binding protein Chain: B: PDB Molecule:atp-dependent clp endopeptidase; PDBTitle: crystal structure of the atp-dependent clp protease clpc from2 clostridium difficile Phyre2 PDB 1e6v chain B domain 2 Region: 53 - 132 Aligned: 77 Modelled: 80 Confidence: 26.1% Identity: 21% Fold: Ferredoxin-like Superfamily: Methyl-coenzyme M reductase subunits Family: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain Phyre2 PDB 1hbn chain B domain 2 Region: 53 - 132 Aligned: 77 Modelled: 80 Confidence: 24.3% Identity: 17% Fold: Ferredoxin-like Superfamily: Methyl-coenzyme M reductase subunits Family: Methyl-coenzyme M reductase alpha and beta chain N-terminal domain Phyre2 PDB 3bro chain A domain 1 Region: 166 - 239 Aligned: 69 Modelled: 74 Confidence: 17.8% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 1 c3dwkC_ 2 c2olvA_ 3 c3hzsA_ 4 d2oqoa1 5 d2olua1 6 c3fwlA_ 7 c3udiA_ 8 c2wadB_ 9 c1pmdA_ 10 d1mv8a1 11 d1dlja1 12 c3zriA_ 13 d1qvra1 14 d2ieaa3 15 d2guka1 16 c2k77A_ 17 c3fesB_ 18 d1e6vb2 19 d1hbnb2 20 d3broa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dwkC_ 100.0 30 PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer 2 c2olvA_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 3 c3hzsA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 4 d2oqoa1 100.0 40 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 5 d2olua1 100.0 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 6 c3fwlA_ 100.0 30 PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli 7 c3udiA_ 100.0 32 PDB header:penicillin-binding protein/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 1a; PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g 8 c2wadB_ 98.5 7 PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) 9 c1pmdA_ 90.7 13 PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) 10 d1mv8a1 49.4 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 11 d1dlja1 37.4 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain 12 c3zriA_ 28.4 15 PDB header:chaperone Chain: A: PDB Molecule:clpb protein; PDBTitle: n-domain of clpv from vibrio cholerae 13 d1qvra1 28.3 15 Fold:Double Clp-N motif Superfamily:Double Clp-N motif Family:Double Clp-N motif 14 d2ieaa3 27.7 17 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 15 d2guka1 27.1 25 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 16 c2k77A_ 26.9 11 PDB header:chaperone, protein binding Chain: A: PDB Molecule:negative regulator of genetic competence PDBTitle: nmr solution structure of the bacillus subtilis clpc n-2 domain 17 c3fesB_ 26.3 22 PDB header:atp binding protein Chain: B: PDB Molecule:atp-dependent clp endopeptidase; PDBTitle: crystal structure of the atp-dependent clp protease clpc from2 clostridium difficile 18 d1e6vb2 26.1 21 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 19 d1hbnb2 24.3 17 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 20 d3broa1 17.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 21 d2iyva1 not modelled 15.9 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 22 d2fbha1 not modelled 15.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 23 c3kaeC_ not modelled 13.9 30 PDB header:protein binding Chain: C: PDB Molecule:possible protein of nuclear scaffold; PDBTitle: cdc27 n-terminus 24 c3gg2B_ not modelled 13.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate 25 c2cv8A_ not modelled 13.1 29 PDB header:hydrolase Chain: A: PDB Molecule:trna-splicing endonuclease; PDBTitle: crystal structure of trna-intron endonuclease from2 sulfolobus tokodaii 26 d1q3ta_ not modelled 12.4 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 27 c2kvrA_ not modelled 11.7 33 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7; PDBTitle: solution nmr structure of human ubiquitin specific protease2 usp7 ubl domain (residues 537-664). nesg target hr4395c/3 sgc-toronto 28 c3sqgE_ not modelled 11.4 21 PDB header:transferase Chain: E: PDB Molecule:methyl-coenzyme m reductase, beta subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 29 c1hbmE_ not modelled 11.4 17 PDB header:methanogenesis Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase enzyme product complex 30 c3fdfA_ not modelled 11.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253. 31 d1gpqa_ not modelled 11.3 26 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 32 c2dvwB_ not modelled 11.3 13 PDB header:cell cycle/protein-binding Chain: B: PDB Molecule:26s protease regulatory subunit 6b; PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome 33 c3ajvD_ not modelled 11.1 33 PDB header:hydrolase Chain: D: PDB Molecule:trna-splicing endonuclease; PDBTitle: splicing endonuclease from aeropyrum pernix 34 c3bj6B_ not modelled 11.0 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 35 c2l9mA_ not modelled 10.7 16 PDB header:apoptosis inhibitor Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: structure of ciap1 card 36 c1gr0A_ not modelled 9.9 27 PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: myo-inositol 1-phosphate synthase from mycobacterium2 tuberculosis in complex with nad and zinc. 37 d1e6ca_ not modelled 9.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 38 c2dzoD_ not modelled 9.6 14 PDB header:protein binding Chain: D: PDB Molecule:26s protease regulatory subunit 6b homolog; PDBTitle: crystal structure analysis of yeast nas6p complexed with2 the proteasome subunit, rpt3 39 c3r84F_ not modelled 9.5 30 PDB header:transcription Chain: F: PDB Molecule:mediator of rna polymerase ii transcription subunit 22; PDBTitle: structure of the mediator head subcomplex med11/22 40 c3o2qB_ not modelled 9.4 17 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 41 d1dgna_ not modelled 9.3 16 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 42 c3r0aB_ not modelled 9.1 20 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) 43 c1mv8A_ not modelled 8.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa 44 c3nqoB_ not modelled 8.7 16 PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution 45 d1k6ma1 not modelled 8.6 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 46 d1m8pa3 not modelled 8.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 47 c3csqC_ not modelled 8.1 11 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 48 c1zuiA_ not modelled 8.1 19 PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase 49 c2pbyB_ not modelled 8.1 20 PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 50 c2eg5C_ not modelled 8.0 21 PDB header:transferase Chain: C: PDB Molecule:xanthosine methyltransferase; PDBTitle: the structure of xanthosine methyltransferase 51 d2dw4a1 not modelled 8.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 52 d1tdza1 not modelled 7.9 13 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 53 d1rkba_ not modelled 7.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 54 d1kaga_ not modelled 7.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 55 d1k82a1 not modelled 7.8 8 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 56 c3prjB_ not modelled 7.7 11 PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase. 57 d1m6ex_ not modelled 7.6 37 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Salicylic acid carboxyl methyltransferase (SAMT) 58 d2grrb1 not modelled 7.5 17 Fold:alpha-alpha superhelix Superfamily:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain Family:Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain 59 d2htja1 not modelled 7.5 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FaeA-like 60 d1gr0a1 not modelled 7.4 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 61 c3o2sB_ not modelled 7.2 17 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 62 d1b79a_ not modelled 7.1 18 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 63 d1r2za1 not modelled 6.7 17 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 64 c2h2wA_ not modelled 6.6 13 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 65 d1b7go2 not modelled 6.5 32 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 66 c2rh5B_ not modelled 6.4 19 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus 67 c2wgoA_ not modelled 6.3 43 PDB header:surfactant protein Chain: A: PDB Molecule:ranaspumin-2; PDBTitle: structure of ranaspumin-2, a surfactant protein from the2 foam nests of a tropical frog 68 c1x1qA_ not modelled 6.3 18 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 69 c3cuqD_ not modelled 6.3 12 PDB header:protein transport Chain: D: PDB Molecule:vacuolar protein-sorting-associated protein 25; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 70 c1rqtB_ not modelled 6.3 22 PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 71 c1rqtA_ not modelled 6.3 22 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 72 d1rqta_ not modelled 6.3 22 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 73 c3imkA_ not modelled 6.2 14 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 74 d1jeqa1 not modelled 6.2 23 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 75 d1jwea_ not modelled 6.2 19 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 76 c2q3eH_ not modelled 6.1 11 PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose 77 d1rz4a2 not modelled 6.1 18 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain 78 c3omdB_ not modelled 6.1 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 79 c3akcA_ not modelled 6.0 21 PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 80 c3cwbQ_ not modelled 6.0 24 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 81 c2a6eF_ not modelled 5.9 15 PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme 82 c3fh2A_ not modelled 5.8 11 PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent protease (heat shock protein); PDBTitle: the crystal structure of the probable atp-dependent protease (heat2 shock protein) from corynebacterium glutamicum 83 d1lk3a_ not modelled 5.8 13 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 84 d1vhxa_ not modelled 5.8 24 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 85 c3fdiA_ not modelled 5.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. 86 d2czca1 not modelled 5.6 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 87 c3b5iB_ not modelled 5.6 16 PDB header:transferase Chain: B: PDB Molecule:s-adenosyl-l-methionine:salicylic acid carboxyl PDBTitle: crystal structure of indole-3-acetic acid methyltransferase 88 c1jjrA_ not modelled 5.6 23 PDB header:dna binding protein Chain: A: PDB Molecule:thyroid autoantigen; PDBTitle: the three-dimensional structure of the c-terminal dna2 binding domain of human ku70 89 d1mkia_ not modelled 5.5 15 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Glutaminase 90 d1ee8a1 not modelled 5.5 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 91 c3uo9B_ not modelled 5.5 24 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 92 c2nyxB_ not modelled 5.5 9 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 93 d1tfra1 not modelled 5.3 17 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 94 d1ux8a_ not modelled 5.3 17 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 95 c3nw0B_ not modelled 5.3 23 PDB header:metal binding protein Chain: B: PDB Molecule:melanoma-associated antigen g1; PDBTitle: crystal structure of mageg1 and nse1 complex 96 c1z1sA_ not modelled 5.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa3332; PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa 97 c3iz6M_ not modelled 5.2 37 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 98 c3ss4C_ not modelled 5.2 24 PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form 99 c3g79A_ not modelled 5.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0