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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2a6eF_

Fold library idPDB HeaderMoleculeTitle
c2a6eF_PDB header: transferaseChain: F: PDB Molecule: rna polymerase sigma factor rpod;PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme


Added to library: Tue Mar 16 12:58:11 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRH
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Known secondary structure (DSSP)

TT



TT




 .........80.........90.........100.........110.........120.........130.........140
Sequence IPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLI
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Known secondary structure (DSSP) TTS
SSS
TTS
TTTS
TTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELG
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Known secondary structure (DSSP)

TTS


SSSS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence REPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEE
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Known secondary structure (DSSP) S


TT
TT

S



SS
B
SSTTS
BGGGS


SSS

T
 .........290.........300.........310.........320.........330.........340.....
Sequence LEKALSKLSEREAMVLKLRKGLIDGEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD
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Known secondary structure (DSSP) SS
TTTT


SSSS
TTSSSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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