Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	L	V	V	A	L	G	G	N	A	L	L	Q	R	G	E	A	L	T	A	E	N	Q	Y	R	N	I	A	S	A	V	P	A	L	A	R	L	A	R	S	Y	R	L	A	I	V	H	G	N	G	P	Q	V	G	L	L	A	L
Secondary structure
SS confidence
Disorder		?	?														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	N	L	A	W	K	E	V	E	P	Y	P	L	D	V	L	V	A	E	S	Q	G	M	I	G	Y	M	L	A	Q	S	L	S	A	Q	P	Q	M	P	P	V	T	T	V	L	T	R	I	E	V	S	P	D	D	P	A	F	L	Q	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																										?	?	?																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	K	F	I	G	P	V	Y	Q	P	E	E	Q	E	A	L	E	A	A	Y	G	W	Q	M	K	R	D	G	K	Y	L	R	R	V	V	A	S	P	Q	P	R	K	I	L	D	S	E	A	I	E	L	L	L	K	E	G	H	V	V	I
Secondary structure
SS confidence
Disorder																			?	?	?	?													?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	S	G	G	G	G	V	P	V	T	D	D	G	A	G	S	E	A	V	I	D	K	D	L	A	A	A	L	L	A	E	Q	I	N	A	D	G	L	V	I	L	T	D	A	D	A	V	Y	E	N	W	G	T	P	Q	Q	R	A	I	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Sequence		H	A	T	P	D	E	L	A	P	F	A	K	A	D	G	S	M	G	P	N	V	T	A	V	S	G	Y	V	R	S	R	G	K	P	A	W	I	G	A	L	S	R	I	E	E	T	L	A	G	E	A	G	T	C	I	S	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?																																				?				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1e19 chain A Region: 2 - 295 Aligned: 293 Modelled: 294 Confidence: 100.0% Identity: 37% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 2e9y chain A Region: 2 - 296 Aligned: 295 Modelled: 295 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 Phyre2 PDB 1b7b chain A Region: 2 - 295 Aligned: 291 Modelled: 294 Confidence: 100.0% Identity: 40% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3kzf chain C Region: 2 - 296 Aligned: 269 Modelled: 273 Confidence: 100.0% Identity: 39% PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase Phyre2 PDB 2rd5 chain A Region: 2 - 296 Aligned: 252 Modelled: 264 Confidence: 100.0% Identity: 26% PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 2ap9 chain A domain 1 Region: 2 - 296 Aligned: 257 Modelled: 269 Confidence: 100.0% Identity: 20% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2r98 chain A Region: 2 - 296 Aligned: 244 Modelled: 266 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae Phyre2 PDB 2buf chain A domain 1 Region: 2 - 296 Aligned: 252 Modelled: 267 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2v5h chain B Region: 1 - 296 Aligned: 253 Modelled: 264 Confidence: 100.0% Identity: 23% PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 Phyre2 PDB 2bty chain A domain 1 Region: 2 - 296 Aligned: 248 Modelled: 264 Confidence: 100.0% Identity: 24% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 1gs5 chain A Region: 1 - 295 Aligned: 246 Modelled: 262 Confidence: 100.0% Identity: 24% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 3l86 chain A Region: 1 - 296 Aligned: 238 Modelled: 252 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 Phyre2 PDB 2j5t chain F Region: 2 - 296 Aligned: 234 Modelled: 255 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate Phyre2 PDB 2egx chain A Region: 4 - 295 Aligned: 235 Modelled: 254 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus Phyre2 PDB 2w21 chain A Region: 2 - 296 Aligned: 235 Modelled: 256 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. Phyre2 PDB 2hmf chain A domain 1 Region: 3 - 296 Aligned: 275 Modelled: 294 Confidence: 100.0% Identity: 17% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1ybd chain A domain 1 Region: 1 - 295 Aligned: 225 Modelled: 242 Confidence: 100.0% Identity: 20% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2bne chain A domain 1 Region: 2 - 296 Aligned: 224 Modelled: 242 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1z9d chain A domain 1 Region: 1 - 296 Aligned: 226 Modelled: 239 Confidence: 100.0% Identity: 19% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 3ll5 chain C Region: 1 - 295 Aligned: 228 Modelled: 248 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex Phyre2 1 d1e19a_ 2 c2e9yA_ 3 d1b7ba_ 4 c3kzfC_ 5 c2rd5A_ 6 d2ap9a1 7 c2r98A_ 8 d2bufa1 9 c2v5hB_ 10 d2btya1 11 d1gs5a_ 12 c3l86A_ 13 c2j5tF_ 14 c2egxA_ 15 c2w21A_ 16 d2hmfa1 17 d1ybda1 18 d2bnea1 19 d1z9da1 20 c3ll5C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1e19a_ 100.0 37 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 2 c2e9yA_ 100.0 41 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 3 d1b7ba_ 100.0 40 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 4 c3kzfC_ 100.0 39 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 5 c2rd5A_ 100.0 26 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 6 d2ap9a1 100.0 20 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 7 c2r98A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 8 d2bufa1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 9 c2v5hB_ 100.0 23 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 10 d2btya1 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 11 d1gs5a_ 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 12 c3l86A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 13 c2j5tF_ 100.0 24 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 14 c2egxA_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 15 c2w21A_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 16 d2hmfa1 100.0 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 17 d1ybda1 100.0 20 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 18 d2bnea1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 19 d1z9da1 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 20 c3ll5C_ 100.0 20 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 21 c2jjxC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 22 d2akoa1 not modelled 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 23 c3c1nA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 24 c3ek5A_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 25 c3nwyB_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 26 c3ll9A_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 27 c3l76B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 28 c3k4yB_ not modelled 100.0 20 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 29 d2j0wa1 not modelled 100.0 16 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 30 d2cdqa1 not modelled 100.0 14 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 31 d2ij9a1 not modelled 100.0 26 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 32 c3d40A_ not modelled 100.0 20 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 33 c2cdqB_ not modelled 100.0 14 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 34 d2a1fa1 not modelled 100.0 20 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 35 d2brxa1 not modelled 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 36 c2ogxB_ not modelled 100.0 22 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 37 c2ogxA_ not modelled 100.0 24 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 38 c2j0wA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 39 c3ab4K_ not modelled 100.0 22 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 40 c2va1A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 41 c2j4kC_ not modelled 100.0 27 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 42 c2vcbA_ not modelled 72.0 16 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase; PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac 43 d2nx2a1 not modelled 67.0 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 44 c3bq9A_ not modelled 63.4 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 45 d1ydha_ not modelled 52.5 21 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 46 c2q4dB_ not modelled 49.6 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 47 d2q4oa1 not modelled 42.4 17 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 48 c2q4oA_ not modelled 42.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 49 d1xpja_ not modelled 42.1 17 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 50 d2b0ja2 not modelled 31.4 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 51 c2ejbA_ not modelled 25.4 16 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 52 c3f46A_ not modelled 22.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii 53 c3mmzA_ not modelled 22.2 17 PDB header:hydrolase Chain: A: PDB Molecule:putative had family hydrolase; PDBTitle: crystal structure of putative had family hydrolase from streptomyces2 avermitilis ma-4680 54 c3gk0H_ not modelled 19.9 26 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 55 d1u02a_ not modelled 18.8 16 Fold:HAD-like Superfamily:HAD-like Family:Trehalose-phosphatase 56 d1k1ea_ not modelled 18.0 15 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 57 c3o6cA_ not modelled 16.9 15 PDB header:transferase Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni 58 c2w6rA_ not modelled 16.7 16 PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels 59 d1m5wa_ not modelled 16.2 26 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 60 c3e8mD_ not modelled 14.9 29 PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily 61 c2iz6A_ not modelled 14.0 16 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 62 d1q0qa2 not modelled 13.0 60 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 63 c3ewiB_ not modelled 12.5 11 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 64 c3mn1B_ not modelled 12.1 15 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 65 d1weha_ not modelled 11.7 7 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 66 d1ecfa1 not modelled 11.6 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 67 c3etjB_ not modelled 10.9 35 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 68 c3gygA_ not modelled 10.7 14 PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis 69 d1yzfa1 not modelled 10.5 30 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:TAP-like 70 d1weka_ not modelled 10.4 22 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 71 c1ecjB_ not modelled 10.2 22 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 72 d1rcua_ not modelled 9.3 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 73 c1rcuB_ not modelled 9.3 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 74 d2zdra2 not modelled 8.5 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 75 c2kswA_ not modelled 8.4 31 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:oryctin; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for oryctin 76 d1gph11 not modelled 8.0 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 77 c2zakB_ not modelled 8.0 18 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 78 d1t35a_ not modelled 7.9 14 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 79 c3dhnA_ not modelled 7.4 16 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 80 c2p9jH_ not modelled 7.2 13 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus 81 c2qx0A_ not modelled 7.1 29 PDB header:transferase Chain: A: PDB Molecule:7,8-dihydro-6-hydroxymethylpterin- PDBTitle: crystal structure of yersinia pestis hppk (ternary complex) 82 c1t3mA_ not modelled 7.0 13 PDB header:hydrolase Chain: A: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 83 c3quaA_ not modelled 6.9 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis 84 c2h29A_ not modelled 6.7 50 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1 85 c3nd5D_ not modelled 6.0 20 PDB header:transferase Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis 86 c3gh1A_ not modelled 6.0 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 87 d1wmaa1 not modelled 5.9 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 88 c1gph1_ not modelled 5.9 22 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 89 d3eeqa2 not modelled 5.9 33 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0