Email l.a.kelley@imperial.ac.uk Description P63177 Date Thu Jan 5 12:07:51 GMT 2012 Unique Job ID 981bf290b787a659

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ipaA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 2 c3gyqB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex 3 c1x7pB_ 100.0 27 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 4 c2i6dA_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. 5 d1gz0a1 100.0 96 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 6 c1gz0G_ 100.0 96 PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb 7 d1v2xa_ 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 8 c1zjrA_ 100.0 29 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 9 d1ipaa1 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 10 c2ha8A_ 100.0 23 PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 11 d1mxia_ 100.0 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 12 c3onpA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 13 c3ic6A_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 14 c3e5yB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 15 c3l8uA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 16 c3ktyA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 17 c3ilkB_ 100.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 18 c3dcmX_ 99.9 17 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 19 d1gz0a2 99.6 99 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 20 d1gz0f2 99.6 99 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 21 d1ipaa2 not modelled 98.9 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 22 c2yy8B_ not modelled 97.2 16 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 23 c4a1dG_ not modelled 96.6 11 PDB header:ribosome Chain: G: PDB Molecule:rpl30; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 24 d2o3aa1 not modelled 96.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 25 c2zkr6_ not modelled 96.5 11 PDB header:ribosomal protein/rna Chain: 6: PDB Molecule:60s ribosomal protein l30e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 26 d2bo1a1 not modelled 96.5 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 27 c3cpqB_ not modelled 96.4 6 PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) 28 d1t0kb_ not modelled 96.3 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 29 d1vhka2 not modelled 96.3 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 30 d1w41a1 not modelled 96.3 8 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 31 d1vqof1 not modelled 95.5 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 32 c3kw2A_ not modelled 95.4 13 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 33 c1vhkA_ not modelled 95.4 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 34 d1xbia1 not modelled 95.4 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 35 c3on1A_ not modelled 95.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2414 protein; PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c 36 d2fc3a1 not modelled 95.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 37 d1rlga_ not modelled 95.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 38 d2aifa1 not modelled 95.1 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 39 d2vgna3 not modelled 95.0 21 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 40 c3ai9X_ not modelled 94.8 12 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 41 d1jj2f_ not modelled 94.7 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 42 c2lbwA_ not modelled 94.7 13 PDB header:rna binding protein Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2; PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant 43 d2qi2a3 not modelled 94.6 12 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 44 c3o85A_ not modelled 94.5 18 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosomal protein l7ae; PDBTitle: giardia lamblia 15.5kd rna binding protein 45 d1x52a1 not modelled 94.3 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 46 d2ozba1 not modelled 94.3 12 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 47 d2czwa1 not modelled 94.2 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 48 c3agjD_ not modelled 93.9 16 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 49 d2qwva1 not modelled 93.7 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 50 c3agjB_ not modelled 93.6 16 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 51 c2qi2A_ not modelled 93.1 12 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 52 c3obwA_ not modelled 93.0 17 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 53 c2vgmA_ not modelled 93.0 19 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 54 c1vhyB_ not modelled 92.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 55 c3obyB_ not modelled 92.7 18 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 56 c2ktvA_ not modelled 92.4 11 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 57 d2alea1 not modelled 91.7 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 58 c3agkA_ not modelled 90.9 19 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: crystal structure of archaeal translation termination factor, arf1 59 c3mcaB_ not modelled 90.2 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 60 c2xznU_ not modelled 90.2 14 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l7ae containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 61 c3e20C_ not modelled 88.2 14 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 62 c3ir9A_ not modelled 88.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 63 d1dt9a2 not modelled 87.0 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 64 d2qmma1 not modelled 86.3 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 65 c2egwB_ not modelled 85.4 13 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 66 c1dt9A_ not modelled 82.3 12 PDB header:translation Chain: A: PDB Molecule:protein (eukaryotic peptide chain release factor PDBTitle: the crystal structure of human eukaryotic release factor2 erf1-mechanism of stop codon recognition and peptidyl-trna3 hydrolysis 67 c3cg6A_ not modelled 82.2 14 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 68 d1v6za2 not modelled 78.2 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 69 c2zkrf_ not modelled 78.0 16 PDB header:ribosomal protein/rna Chain: F: PDB Molecule:rna expansion segment es7 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 70 c1z85B_ not modelled 77.9 20 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 71 d1nxza2 not modelled 76.7 12 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 72 d1k3ra2 not modelled 68.2 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 73 c2cx8B_ not modelled 66.7 14 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 74 c4a1eF_ not modelled 64.7 13 PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 75 c2kg4A_ not modelled 64.7 15 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 76 c3ib6B_ not modelled 64.6 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from listeria2 monocytogenes serotype 4b 77 c3u5cM_ not modelled 63.9 17 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s12; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 78 c3iz5H_ not modelled 62.0 16 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 79 c3izcH_ not modelled 59.0 14 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein rpl8 (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 80 c1k3rA_ not modelled 54.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 81 d1cl1a_ not modelled 49.5 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 82 d1u7pa_ not modelled 48.9 16 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 83 d1a53a_ not modelled 41.3 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 84 c1t9hA_ not modelled 35.5 11 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 85 c1r0lD_ not modelled 34.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 86 d1jvna2 not modelled 34.3 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 87 c2y0fD_ not modelled 33.8 15 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 88 c1s1iG_ not modelled 33.6 16 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l8-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 89 c2gqnB_ not modelled 32.5 11 PDB header:lyase Chain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide 90 c2c3zA_ not modelled 31.2 17 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 91 c3a14B_ not modelled 30.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 92 c2cb1A_ not modelled 26.4 18 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 93 c2eghA_ not modelled 25.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 94 c3q4gA_ not modelled 22.6 17 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 95 c2kboA_ not modelled 20.0 12 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 96 c2x3yA_ not modelled 19.6 25 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 97 d3by5a1 not modelled 18.8 15 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 98 c3by5A_ not modelled 18.8 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 99 d1cs1a_ not modelled 18.3 8 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like