Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP41067
DateThu Jan 5 12:01:24 GMT 2012
Unique Job ID970488b0d5b08b2d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3jqoV_
Top template information
PDB header:transport protein
Chain: V: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system
Confidence and coverage
Confidence: 99.9% Coverage: 37%
177 residues ( 37% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MASINTIVKRKQYLWLGIVVVGTASAIGGALYLSDVDMSGNGETVAEQEPVPDMTGVVDT
Secondary structure 
SS confidence 
Disorder  ?????
??????????????????????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  TFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  KALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTP
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PPQVTYQSVPVPNRIQRKVFTRNEGKQGPSLPYIPSGSFAKAMLIEGADANASVTGNEST
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????
??????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VPMQLRITGLVEMPNSKTYDATGCFVGLEAWGDVSSERAIVRTRNISCLKDGKTIDMPIK
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GHVSFRGKNGIKGEVVMRNGKILGWAWGAGFVDGIGQGMERASQPAVGLGATAAYGAGDV
Secondary structure 
SS confidence 
Disorder 
?
?
????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVTVVFQDGFQLKTVEEMALERT
Secondary structure 
SS confidence 
Disorder 
??
???????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.....
Sequence  QSRAEEDNPESPVPVPPSAESHLNGFNTDQMLKQLGNLNPQQFMSGSQGGGNDGK
Secondary structure 
SS confidence 
Disorder 
???????????????????????????
???????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3jqo chain V

3D model

Region: 195 - 414
Aligned: 177
Modelled: 184
Confidence: 99.9%
Identity: 15%
PDB header:transport protein
Chain: V: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system

Phyre2

PDB 2bhv chain C

3D model

Region: 214 - 414
Aligned: 171
Modelled: 185
Confidence: 99.8%
Identity: 19%
PDB header:bacterial protein
Chain: C: PDB Molecule:comb10;
PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori

Phyre2

PDB 3ghg chain K

3D model

Region: 64 - 123
Aligned: 60
Modelled: 60
Confidence: 63.9%
Identity: 5%
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen

Phyre2

PDB 1ei3 chain E

3D model

Region: 64 - 126
Aligned: 63
Modelled: 63
Confidence: 52.3%
Identity: 5%
PDB header:
PDB COMPND:

Phyre2

PDB 3n4x chain B

3D model

Region: 65 - 125
Aligned: 61
Modelled: 60
Confidence: 46.4%
Identity: 13%
PDB header:replication
Chain: B: PDB Molecule:monopolin complex subunit csm1;
PDBTitle: structure of csm1 full-length

Phyre2

PDB 3m9b chain K

3D model

Region: 84 - 129
Aligned: 46
Modelled: 46
Confidence: 43.6%
Identity: 22%
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa

Phyre2

PDB 1deq chain O

3D model

Region: 64 - 137
Aligned: 74
Modelled: 74
Confidence: 41.4%
Identity: 5%
PDB header:
PDB COMPND:

Phyre2

PDB 1deq chain F

3D model

Region: 64 - 142
Aligned: 79
Modelled: 79
Confidence: 39.1%
Identity: 11%
PDB header:
PDB COMPND:

Phyre2

PDB 3l9o chain A

3D model

Region: 53 - 125
Aligned: 73
Modelled: 73
Confidence: 38.7%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome

Phyre2

PDB 3oja chain B

3D model

Region: 65 - 126
Aligned: 62
Modelled: 62
Confidence: 38.3%
Identity: 24%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 3hnw chain B

3D model

Region: 69 - 126
Aligned: 58
Modelled: 58
Confidence: 36.0%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750

Phyre2

PDB 2jee chain A

3D model

Region: 69 - 123
Aligned: 55
Modelled: 55
Confidence: 25.4%
Identity: 18%
PDB header:cell cycle
Chain: A: PDB Molecule:yiiu;
PDBTitle: xray structure of e. coli yiiu

Phyre2

PDB 1d0g chain R domain 1

3D model

Region: 301 - 311
Aligned: 11
Modelled: 11
Confidence: 22.9%
Identity: 55%
Fold: TNF receptor-like
Superfamily: TNF receptor-like
Family: TNF receptor-like

Phyre2

PDB 2x7a chain B

3D model

Region: 64 - 116
Aligned: 53
Modelled: 53
Confidence: 22.8%
Identity: 26%
PDB header:immune system
Chain: B: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain

Phyre2

PDB 3a7p chain B

3D model

Region: 68 - 126
Aligned: 59
Modelled: 59
Confidence: 22.3%
Identity: 10%
PDB header:protein transport
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg16

Phyre2

PDB 3dtp chain A

3D model

Region: 65 - 126
Aligned: 62
Modelled: 62
Confidence: 21.7%
Identity: 11%
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map

Phyre2

PDB 2oqq chain B

3D model

Region: 83 - 118
Aligned: 36
Modelled: 36
Confidence: 20.8%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:transcription factor hy5;
PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana

Phyre2

PDB 2xzr chain A

3D model

Region: 67 - 121
Aligned: 55
Modelled: 55
Confidence: 19.6%
Identity: 13%
PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors

Phyre2

PDB 2fd6 chain U domain 3

3D model

Region: 263 - 297
Aligned: 31
Modelled: 35
Confidence: 19.5%
Identity: 26%
Fold: Snake toxin-like
Superfamily: Snake toxin-like
Family: Extracellular domain of cell surface receptors

Phyre2

PDB 2hpc chain F

3D model

Region: 81 - 129
Aligned: 49
Modelled: 49
Confidence: 19.5%
Identity: 14%
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen, gamma polypeptide;
PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.

Phyre2
1
c3jqoV_
2
c2bhvC_
3
c3ghgK_
4
c1ei3E_
5
c3n4xB_
6
c3m9bK_
7
c1deqO_
8
c1deqF_
9
c3l9oA_
10
c3ojaB_
11
c3hnwB_
12
c2jeeA_
13
d1d0gr1
14
c2x7aB_
15
c3a7pB_
16
c3dtpA_
17
c2oqqB_
18
c2xzrA_
19
d2fd6u3
20
c2hpcF_
21
22
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25
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3jqoV_
99.9 15 PDB header:transport protein
Chain: V: PDB Molecule:traf protein;
PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system
2c2bhvC_
99.8 19 PDB header:bacterial protein
Chain: C: PDB Molecule:comb10;
PDBTitle: structure of comb10 of the com type iv secretion system of2 helicobacter pylori
3c3ghgK_
63.9 5 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
4c1ei3E_
52.3 5 PDB header:
PDB COMPND:
5c3n4xB_
46.4 13 PDB header:replication
Chain: B: PDB Molecule:monopolin complex subunit csm1;
PDBTitle: structure of csm1 full-length
6c3m9bK_
43.6 22 PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
7c1deqO_
41.4 5 PDB header:
PDB COMPND:
8c1deqF_
39.1 11 PDB header:
PDB COMPND:
9c3l9oA_
38.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
10c3ojaB_
38.3 24 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
11c3hnwB_
36.0 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
12c2jeeA_
25.4 18 PDB header:cell cycle
Chain: A: PDB Molecule:yiiu;
PDBTitle: xray structure of e. coli yiiu
13d1d0gr1
22.9 55 Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
14c2x7aB_
22.8 26 PDB header:immune system
Chain: B: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain
15c3a7pB_
22.3 10 PDB header:protein transport
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg16
16c3dtpA_
21.7 11 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
17c2oqqB_
20.8 17 PDB header:transcription
Chain: B: PDB Molecule:transcription factor hy5;
PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana
18c2xzrA_
19.6 13 PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors
19d2fd6u3
19.5 26 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
20c2hpcF_
19.5 14 PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen, gamma polypeptide;
PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.
21c1cz7C_
not modelled 18.7 13 PDB header:contractile protein
Chain: C: PDB Molecule:microtubule motor protein ncd;
PDBTitle: the crystal structure of a minus-end directed microtubule2 motor protein ncd reveals variable dimer conformations
22c2xgjA_
not modelled 18.5 13 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
23c2w6aB_
not modelled 18.3 22 PDB header:signaling protein
Chain: B: PDB Molecule:arf gtpase-activating protein git1;
PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain
24c3oa7A_
not modelled 18.2 17 PDB header:structural protein
Chain: A: PDB Molecule:head morphogenesis protein, chaotic nuclear migration
PDBTitle: structure of the c-terminal domain of cnm67, a core component of the2 spindle pole body of saccharomyces cerevisiae
25c1junB_
not modelled 17.5 11 PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer
26c2yy0D_
not modelled 15.6 3 PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
27c1n73C_
not modelled 15.4 8 PDB header:blood clotting
Chain: C: PDB Molecule:fibrin gamma chain;
PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide
28c2z0fA_
not modelled 15.3 9 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphoglucomutase;
PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8
29c2jo1A_
not modelled 14.4 17 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
30d1gpia_
not modelled 13.2 19 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolase family 7 catalytic core
31c1dipA_
not modelled 13.0 18 PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
32d1ogda_
not modelled 12.9 16 Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
33d2ncda_
not modelled 12.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
34d1fxkc_
not modelled 12.7 11 Fold:Long alpha-hairpin
Superfamily:Prefoldin
Family:Prefoldin
35c1jocA_
not modelled 12.7 13 PDB header:membrane protein
Chain: A: PDB Molecule:early endosomal autoantigen 1;
PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate
36c3he5D_
not modelled 12.7 18 PDB header:de novo protein
Chain: D: PDB Molecule:synzip2;
PDBTitle: heterospecific coiled-coil pair synzip2:synzip1
37c2wl2B_
not modelled 12.0 16 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
38c3hizB_
not modelled 11.8 9 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
39c3cvfA_
not modelled 11.3 12 PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
40c3h9mA_
not modelled 11.2 20 PDB header:lyase
Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i;
PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii
41d1ykhb1
not modelled 11.2 20 Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
42c3hd7A_
not modelled 11.2 13 PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
43c3ni0A_
not modelled 11.1 17 PDB header:immune system
Chain: A: PDB Molecule:bone marrow stromal antigen 2;
PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain
44c2wukD_
not modelled 10.6 8 PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
45c2x5qA_
not modelled 10.6 16 PDB header:unknown function
Chain: A: PDB Molecule:sso1986;
PDBTitle: crystal structure of hypothetical protein sso1986 from2 sulfolobus solfataricus p2
46d1ivsa1
not modelled 10.4 10 Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Valyl-tRNA synthetase (ValRS) C-terminal domain
47c3q0xA_
not modelled 10.3 12 PDB header:structural protein
Chain: A: PDB Molecule:centriole protein;
PDBTitle: n-terminal coiled-coil dimer domain of c. reinhardtii sas-6 homolog2 bld12p
48c2gl2B_
not modelled 9.9 10 PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada
49c3i3wB_
not modelled 9.6 20 PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis
50d2ga1a1
not modelled 9.5 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Alr1493-like
51c2aanA_
not modelled 9.4 31 PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
52c2fuvB_
not modelled 9.4 8 PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucomutase;
PDBTitle: phosphoglucomutase from salmonella typhimurium.
53d1e30a_
not modelled 9.2 33 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
54d2ob5a1
not modelled 9.1 24 Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
55c1ci6A_
not modelled 9.1 16 PDB header:transcription
Chain: A: PDB Molecule:transcription factor atf-4;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
56c2ykqC_
not modelled 9.0 13 PDB header:rna-binding protein
Chain: C: PDB Molecule:line-1 orf1p;
PDBTitle: structure of the human line-1 orf1p trimer
57c3ol1A_
not modelled 8.9 8 PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
58c1cosC_
not modelled 8.5 16 PDB header:alpha-helical bundle
Chain: C: PDB Molecule:coiled serine;
PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
59c1cosB_
not modelled 8.5 16 PDB header:alpha-helical bundle
Chain: B: PDB Molecule:coiled serine;
PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
60c1cosA_
not modelled 8.5 16 PDB header:alpha-helical bundle
Chain: A: PDB Molecule:coiled serine;
PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
61c2zdiC_
not modelled 8.4 13 PDB header:chaperone
Chain: C: PDB Molecule:prefoldin subunit alpha;
PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3
62c1l4aD_
not modelled 8.4 11 PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:s-snap25 fusion protein;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
63c1debA_
not modelled 8.2 26 PDB header:structural protein
Chain: A: PDB Molecule:adenomatous polyposis coli protein;
PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc
64d2axtj1
not modelled 8.2 25 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
65c3iv1F_
not modelled 8.0 15 PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
66d2rkya2
not modelled 8.0 27 Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
67c3u59C_
not modelled 7.7 8 PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
68c1tuoA_
not modelled 7.5 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative phosphomannomutase;
PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8
69c1jccC_
not modelled 7.3 7 PDB header:membrane protein
Chain: C: PDB Molecule:major outer membrane lipoprotein;
PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations
70d1sdda1
not modelled 7.3 25 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
71c2js5B_
not modelled 7.3 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1
72d2phcb1
not modelled 7.3 21 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
73c3bvhC_
not modelled 7.2 9 PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide
74c2kg4A_
not modelled 7.1 26 PDB header:cell cycle
Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein
PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr
75d1tsfa_
not modelled 7.1 13 Fold:Rof/RNase P subunit-like
Superfamily:Rof/RNase P subunit-like
Family:RNase P subunit p29-like
76d1qhqa_
not modelled 7.0 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
77d2cpta1
not modelled 6.9 24 Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
78c2phcB_
not modelled 6.7 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
79c1fosF_
not modelled 6.7 12 PDB header:transcription/dna
Chain: F: PDB Molecule:c-jun proto-oncogene protein;
PDBTitle: two human c-fos:c-jun:dna complexes
80c3hvzB_
not modelled 6.7 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
81c3iynR_
not modelled 6.6 21 PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
82c3lqiA_
not modelled 6.5 24 PDB header:transferase
Chain: A: PDB Molecule:mll1 phd3-bromo;
PDBTitle: crystal structure of mll1 phd3-bromo complexed with h3(1-9)k4me22 peptide
83c3qo8A_
not modelled 6.5 12 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
84d1wr0a1
not modelled 6.5 18 Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
85d1hfua1
not modelled 6.4 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
86c2xgfA_
not modelled 6.3 22 PDB header:viral protein
Chain: A: PDB Molecule:long tail fiber protein p37;
PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip
87d1an2a_
not modelled 6.3 11 Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
88c1bf5A_
not modelled 6.1 13 PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex
89d1l8na2
not modelled 6.1 13 Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:alpha-D-glucuronidase, N-terminal domain
90c3b5nC_
not modelled 6.1 3 PDB header:membrane protein
Chain: C: PDB Molecule:protein transport protein sec9;
PDBTitle: structure of the yeast plasma membrane snare complex
91d1nkpa_
not modelled 6.0 20 Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain
92c3demB_
not modelled 6.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:complement factor masp-3;
PDBTitle: cub1-egf-cub2 domain of human masp-1/3
93c2eqbC_
not modelled 5.9 12 PDB header:endocytosis/exocytosis
Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex
94c2rfyB_
not modelled 5.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: crystal structure of cellobiohydrolase from melanocarpus2 albomyces complexed with cellobiose
95c1coiA_
not modelled 5.8 12 PDB header:alpha-helical bundle
Chain: A: PDB Molecule:coil-vald;
PDBTitle: designed trimeric coiled coil-vald
96c1zbtA_
not modelled 5.7 12 PDB header:translation
Chain: A: PDB Molecule:peptide chain release factor 1;
PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution
97d2h8pc1
not modelled 5.7 11 Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
98d1gyca1
not modelled 5.7 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
99c3bg4D_
not modelled 5.7 45 PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:guamerin;
PDBTitle: the crystal structure of guamerin in complex with2 chymotrypsin and the development of an elastase-specific3 inhibitor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0