Email l.a.kelley@imperial.ac.uk Description P77804 Date Thu Jan 5 12:32:59 GMT 2012 Unique Job ID 932326283466f949

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j20a2 32.8 16 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 2 d1k92a2 32.4 19 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 3 c2pfuA_ 29.6 6 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 4 c3obaA_ 25.6 31 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 5 c1bhgB_ 23.4 19 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 6 d1d6za4 22.6 21 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 7 c1nvpC_ 22.5 24 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 8 d1nvpc_ 22.5 24 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 9 c3mv14_ 22.5 31 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 10 c3ipfA_ 22.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 11 c3lpgA_ 22.3 19 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 12 d2g82a1 22.0 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 13 c1jz6C_ 21.9 31 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 14 c1nh2C_ 21.7 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 15 d1nh2c_ 21.7 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 16 d1vc2a1 21.5 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 17 c1yq2C_ 21.4 19 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 18 c3bgaB_ 20.8 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 19 d6paxa1 20.8 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 20 d2b4ro1 18.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 21 d1yqea1 not modelled 17.2 16 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 22 d1gado1 not modelled 16.3 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 23 d1ytfc_ not modelled 16.3 19 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 24 c1k97A_ not modelled 16.2 19 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 25 d1zud21 not modelled 15.7 38 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 26 d1j0xo1 not modelled 14.8 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 27 d1obfo1 not modelled 14.5 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 28 c2gfqC_ not modelled 13.5 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 29 d1hdgo1 not modelled 13.4 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 30 d1k78a1 not modelled 13.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 31 c2w7vB_ not modelled 12.7 17 PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus 32 c3mhaB_ not modelled 12.5 67 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein lprg; PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim 33 c2kl0A_ not modelled 11.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 34 d1x87a_ not modelled 11.5 24 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 35 c1rm1C_ not modelled 10.9 19 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 36 c3cmgA_ not modelled 10.8 22 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 37 d1k8ba_ not modelled 10.6 13 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 38 d3cmco1 not modelled 10.5 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 39 d2caya1 not modelled 10.4 19 Fold:PH domain-like barrel Superfamily:PH domain-like Family:VPS36 N-terminal domain-like 40 d2odgc1 not modelled 10.4 50 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 41 c2jv8A_ not modelled 10.3 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ne1242; PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4 42 c2gjhA_ not modelled 10.3 20 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 43 c1ifpA_ not modelled 10.2 29 PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly 44 d1dm9a_ not modelled 10.2 31 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 45 c1dm9A_ not modelled 10.2 31 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 46 d3gpdg1 not modelled 10.0 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 47 c1kskA_ not modelled 9.5 15 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 48 d1dssg1 not modelled 9.4 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 49 c1tygG_ not modelled 9.3 25 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 50 d2cu3a1 not modelled 9.3 45 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 51 c2cqjA_ not modelled 9.2 8 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 52 d1dk7a_ not modelled 9.0 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 53 c1kh2D_ not modelled 9.0 15 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 54 c3iz6I_ not modelled 8.9 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16 (s9p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 55 d1oela2 not modelled 8.7 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 56 c3c8vA_ not modelled 8.7 23 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 57 d1vioa2 not modelled 8.6 8 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 58 d1srva_ not modelled 8.6 25 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 59 d1u8fo1 not modelled 8.5 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 60 c1spfA_ not modelled 8.4 46 PDB header:lipoprotein(surface film) Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c; PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix 61 c1zeqX_ not modelled 8.4 8 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 62 d1tygb_ not modelled 8.3 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 63 c2zkqi_ not modelled 8.2 45 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 64 d2pila_ not modelled 8.1 11 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 65 d1kh0a_ not modelled 7.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 66 c3m6cA_ not modelled 7.8 22 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 67 c2kd2A_ not modelled 7.8 26 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: nmr structure of faim-ctd 68 c3fn9B_ not modelled 7.8 33 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 69 d1gwma_ not modelled 7.7 7 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 29 carbohydrate binding module, CBM29 70 d1v6ga2 not modelled 7.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 71 d1sjpa2 not modelled 7.5 25 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 72 c3dh3C_ not modelled 7.5 29 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 73 c2jwlB_ not modelled 7.3 10 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 74 c3pcqX_ not modelled 7.1 24 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem i 4.8k protein; PDBTitle: femtosecond x-ray protein nanocrystallography 75 d1b77a2 not modelled 7.1 19 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 76 d1z45a1 not modelled 7.1 18 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 77 c3mk7B_ not modelled 7.1 20 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 78 c3em0A_ not modelled 7.1 14 PDB header:lipid binding protein Chain: A: PDB Molecule:ileal bile acid-binding protein; PDBTitle: crystal structure of zebrafish ileal bile acid-bindin protein2 complexed with cholic acid (crystal form b). 79 c3e8tA_ not modelled 7.0 11 PDB header:transport protein Chain: A: PDB Molecule:takeout-like protein 1; PDBTitle: crystal structure of epiphyas postvittana takeout 1 80 c1s1hI_ not modelled 7.0 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 81 d1we3a2 not modelled 7.0 25 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 82 d1sjpa3 not modelled 6.9 13 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 83 d1ffva2 not modelled 6.9 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 84 c1vioA_ not modelled 6.9 15 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 85 d2axtj1 not modelled 6.8 26 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 86 d1pdnc_ not modelled 6.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 87 c2wj7D_ not modelled 6.6 47 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin 88 c2ci8A_ not modelled 6.6 26 PDB header:translation Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed 89 d1kida_ not modelled 6.5 38 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 90 d2p4pa1 not modelled 6.5 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 91 d2pkqo1 not modelled 6.5 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 92 c3r45C_ not modelled 6.5 18 PDB header:nuclear protein Chain: C: PDB Molecule:holliday junction recognition protein; PDBTitle: structure of a cenp-a-histone h4 heterodimer in complex with chaperone2 hjurp 93 d1yqga1 not modelled 6.5 18 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 94 d1of5b_ not modelled 6.4 24 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 95 d1rm6c2 not modelled 6.3 44 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 96 d2ahra1 not modelled 6.3 13 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 97 d1czda2 not modelled 6.3 16 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 98 c3a1zC_ not modelled 6.3 10 PDB header:transport protein Chain: C: PDB Molecule:hemolymph juvenile hormone binding protein; PDBTitle: crystal structure of juvenile hormone binding protein from silkworm 99 d1dgja2 not modelled 6.3 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins