Email l.a.kelley@imperial.ac.uk Description P33643 Date Thu Jan 5 11:52:28 GMT 2012 Unique Job ID 91b3d5b00d82399f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qyuA_ 100.0 96 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 2 c1v9fA_ 100.0 100 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 3 d1v9fa_ 100.0 100 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 4 d1v9ka_ 100.0 31 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 5 c2i82D_ 100.0 35 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 6 c1kskA_ 100.0 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 7 c1vioA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 8 c3dh3C_ 100.0 21 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 9 c2omlA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 10 c2olwB_ 100.0 22 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 11 d1kska4 100.0 22 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 12 d1vioa1 100.0 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 13 c2gmlA_ 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 14 c2k6pA_ 99.5 18 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 15 c3bbnD_ 99.1 19 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 16 c1dm9A_ 99.0 21 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 17 d1dm9a_ 99.0 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 18 d1vioa2 98.9 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 19 d1p9ka_ 98.6 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 20 d1c06a_ 98.6 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 21 d2uubd1 not modelled 98.5 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 22 c2cqjA_ not modelled 98.3 20 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 23 d2gy9d1 not modelled 98.2 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 24 c3hp7A_ not modelled 97.7 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 25 d1k8wa5 not modelled 97.6 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 26 d2apoa2 not modelled 97.5 16 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 27 c2ey4A_ not modelled 97.5 26 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 28 d2ey4a2 not modelled 97.4 25 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 29 d1r3ea2 not modelled 97.4 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 30 c1s1hD_ not modelled 97.4 13 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 31 d1sgva2 not modelled 97.4 24 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 32 d1kska3 not modelled 97.3 29 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 33 c3uaiA_ not modelled 97.3 13 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 34 c2xzmD_ not modelled 97.2 13 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 35 c2apoA_ not modelled 97.1 21 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 36 c1k8wA_ not modelled 96.9 20 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 37 c1sgvA_ not modelled 96.9 24 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 38 d1h3fa2 not modelled 96.7 12 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 39 c3kbgA_ not modelled 96.0 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 40 c2xzmW_ not modelled 96.0 22 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 41 d1jh3a_ not modelled 95.9 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 42 c3iz6D_ not modelled 95.8 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 43 c3izbD_ not modelled 95.5 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 44 c1h3eA_ not modelled 95.2 11 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 45 c1ze2B_ not modelled 95.0 17 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 46 c2janD_ not modelled 94.3 15 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 47 c3iz6C_ not modelled 88.3 14 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 48 d1vjka_ not modelled 82.4 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 49 c2qieB_ not modelled 82.0 18 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 50 c2qjlA_ not modelled 74.0 9 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 51 c3po0A_ not modelled 73.9 19 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 52 c2g1eA_ not modelled 73.6 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 53 c3rpfC_ not modelled 73.1 20 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 54 d1wgka_ not modelled 70.9 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 55 c2kmmA_ not modelled 66.6 23 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 56 d1fm0d_ not modelled 64.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 57 d1xo3a_ not modelled 64.0 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 58 d1t3qa2 not modelled 60.7 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 59 d2g1la1 not modelled 58.8 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 60 c3hvzB_ not modelled 57.6 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 61 c3dwmA_ not modelled 52.6 19 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 62 c2jqlA_ not modelled 52.3 15 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 63 c1v8cA_ not modelled 52.2 16 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 64 d1tkea1 not modelled 50.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 65 c2eh0A_ not modelled 48.6 24 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 66 c1n60D_ not modelled 46.3 10 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 67 c2k9xA_ not modelled 45.6 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 68 d1n62a2 not modelled 45.5 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 69 d1rwsa_ not modelled 43.0 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 70 d1v8ca1 not modelled 42.3 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 71 c3fm8A_ not modelled 41.7 20 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 72 d1nyra2 not modelled 32.6 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 73 c2l52A_ not modelled 32.3 15 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 74 d1wlna1 not modelled 30.3 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 75 c2zodB_ not modelled 29.2 14 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 76 c2zauB_ not modelled 28.4 18 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 77 d1zud21 not modelled 27.7 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 78 d1wxqa2 not modelled 27.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 79 d2affa1 not modelled 24.6 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 80 d2ff4a3 not modelled 24.1 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 81 d2zoda2 not modelled 23.5 14 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 82 d1gr0a1 not modelled 22.9 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 83 c2hj1A_ not modelled 22.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 84 d2hj1a1 not modelled 22.3 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 85 c1wwtA_ not modelled 21.8 17 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 86 d1lgpa_ not modelled 21.3 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 87 d1vjpa1 not modelled 20.7 6 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 88 d2fcja1 not modelled 20.2 17 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 89 c1uheA_ not modelled 19.4 28 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 90 c3poaA_ not modelled 19.0 13 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 91 c2kklA_ not modelled 18.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 92 c3hx1B_ not modelled 17.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 93 d1ryja_ not modelled 16.5 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 94 c1r21A_ not modelled 16.4 24 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 95 c1u1iC_ not modelled 16.4 9 PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus 96 d1wm3a_ not modelled 15.7 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 97 c2c45F_ not modelled 15.5 20 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 98 c3plxB_ not modelled 15.2 20 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 99 d2hzab1 not modelled 15.1 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like