Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	A	L	C	D	V	N	A	F	Y	A	S	C	E	T	V	F	R	P	D	L	W	G	K	P	V	V	V	L	S	N	N	D	G	C	V	I	A	R	N	A	E	A	K	A	L	G	V	K	M	G	D	P	W	F	K	Q	K	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	F	R	R	C	G	V	V	C	F	S	S	N	Y	E	L	Y	A	D	M	S	N	R	V	M	S	T	L	E	E	L	S	P	R	V	E	I	Y	S	I	D	E	A	F	C	D	L	T	G	V	R	N	C	R	D	L	T	D	F	G
Secondary structure
SS confidence
Disorder																																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	E	I	R	A	T	V	L	Q	R	T	H	L	T	V	G	V	G	I	A	Q	T	K	T	L	A	K	L	A	N	H	A	A	K	K	W	Q	R	Q	T	G	G	V	V	D	L	S	N	L	E	R	Q	R	K	L	M	S	A	L	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	D	D	V	W	G	I	G	R	R	I	S	K	K	L	D	A	M	G	I	K	T	V	L	D	L	A	D	T	D	I	R	F	I	R	K	H	F	N	V	V	L	E	R	T	V	R	E	L	R	G	E	P	C	L	Q	L	E	E	F
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	P	T	K	Q	E	I	I	C	S	R	S	F	G	E	R	I	T	D	Y	P	S	M	R	Q	A	I	C	S	Y	A	A	R	A	A	E	K	L	R	S	E	H	Q	Y	C	R	F	I	S	T	F	I	K	T	S	P	F	A	L	N
Secondary structure
SS confidence
Disorder		?			?	?	?	?		?	?		?																													?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	P	Y	Y	G	N	S	A	S	V	K	L	L	T	P	T	Q	D	S	R	D	I	I	N	A	A	T	R	S	L	D	A	I	W	Q	A	G	H	R	Y	Q	K	A	G	V	M	L	G	D	F	F	S	Q	G	V	A	Q	L	N	L
Secondary structure
SS confidence
Disorder																																				?															?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	D	D	N	A	P	R	P	G	S	E	Q	L	M	T	V	M	D	T	L	N	A	K	E	G	R	G	T	L	Y	F	A	G	Q	G	I	Q	Q	Q	W	Q	M	K	R	A	M	L	S	P	R	Y	T	T	R	S	S	D	L	L	R
Secondary structure
SS confidence
Disorder				?	?	?	?	?																											?	?	?	?	?	?	?	?	?			?			?	?	?	?									?
Disorder confidence
		.	.
Sequence		V	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gqc chain B Region: 1 - 354 Aligned: 345 Modelled: 354 Confidence: 100.0% Identity: 23% PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex Phyre2 PDB 2oh2 chain B Region: 1 - 350 Aligned: 334 Modelled: 350 Confidence: 100.0% Identity: 24% PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase Phyre2 PDB 1s97 chain D Region: 1 - 351 Aligned: 333 Modelled: 351 Confidence: 100.0% Identity: 25% PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch Phyre2 PDB 1t94 chain B Region: 1 - 350 Aligned: 327 Modelled: 348 Confidence: 100.0% Identity: 25% PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa Phyre2 PDB 2aq4 chain A Region: 1 - 352 Aligned: 343 Modelled: 352 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. Phyre2 PDB 1jih chain A Region: 1 - 351 Aligned: 336 Modelled: 349 Confidence: 100.0% Identity: 21% PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta Phyre2 PDB 2r8k chain B Region: 1 - 351 Aligned: 336 Modelled: 349 Confidence: 100.0% Identity: 21% PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna Phyre2 PDB 3mr2 chain A Region: 1 - 352 Aligned: 339 Modelled: 352 Confidence: 100.0% Identity: 22% PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) Phyre2 PDB 1t3n chain B Region: 1 - 351 Aligned: 339 Modelled: 351 Confidence: 100.0% Identity: 24% PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp Phyre2 PDB 2fll chain A Region: 1 - 351 Aligned: 332 Modelled: 351 Confidence: 100.0% Identity: 25% PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp Phyre2 PDB 1k1q chain A Region: 1 - 352 Aligned: 326 Modelled: 352 Confidence: 100.0% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus Phyre2 PDB 1t94 chain A domain 2 Region: 1 - 237 Aligned: 228 Modelled: 235 Confidence: 100.0% Identity: 29% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1jx4 chain A domain 2 Region: 1 - 239 Aligned: 231 Modelled: 239 Confidence: 100.0% Identity: 32% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1k1s chain A domain 2 Region: 1 - 238 Aligned: 230 Modelled: 237 Confidence: 100.0% Identity: 29% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1jih chain A domain 2 Region: 1 - 239 Aligned: 229 Modelled: 237 Confidence: 100.0% Identity: 25% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1zet chain A domain 2 Region: 1 - 243 Aligned: 234 Modelled: 241 Confidence: 100.0% Identity: 31% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1im4 chain A Region: 1 - 205 Aligned: 197 Modelled: 205 Confidence: 100.0% Identity: 31% Fold: DNA/RNA polymerases Superfamily: DNA/RNA polymerases Family: Lesion bypass DNA polymerase (Y-family), catalytic domain Phyre2 PDB 1unn chain C Region: 245 - 360 Aligned: 107 Modelled: 116 Confidence: 99.6% Identity: 16% Fold: Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain Family: Lesion bypass DNA polymerase (Y-family), little finger domain Phyre2 PDB 1zet chain A domain 1 Region: 245 - 351 Aligned: 106 Modelled: 107 Confidence: 99.5% Identity: 8% Fold: Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain Family: Lesion bypass DNA polymerase (Y-family), little finger domain Phyre2 PDB 1t94 chain A domain 1 Region: 245 - 349 Aligned: 95 Modelled: 105 Confidence: 99.3% Identity: 16% Fold: Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain Family: Lesion bypass DNA polymerase (Y-family), little finger domain Phyre2 1 c3gqcB_ 2 c2oh2B_ 3 c1s97D_ 4 c1t94B_ 5 c2aq4A_ 6 c1jihA_ 7 c2r8kB_ 8 c3mr2A_ 9 c1t3nB_ 10 c2fllA_ 11 c1k1qA_ 12 d1t94a2 13 d1jx4a2 14 d1k1sa2 15 d1jiha2 16 d1zeta2 17 d1im4a_ 18 d1unnc_ 19 d1zeta1 20 d1t94a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gqcB_ 100.0 23 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 2 c2oh2B_ 100.0 24 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 3 c1s97D_ 100.0 25 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 4 c1t94B_ 100.0 25 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 5 c2aq4A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 6 c1jihA_ 100.0 21 PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta 7 c2r8kB_ 100.0 21 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 8 c3mr2A_ 100.0 22 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 9 c1t3nB_ 100.0 24 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 10 c2fllA_ 100.0 25 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 11 c1k1qA_ 100.0 23 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 12 d1t94a2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 13 d1jx4a2 100.0 32 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 14 d1k1sa2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 15 d1jiha2 100.0 25 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 16 d1zeta2 100.0 31 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 17 d1im4a_ 100.0 31 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 18 d1unnc_ 99.6 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 19 d1zeta1 99.5 8 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 20 d1t94a1 99.3 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 21 d1jiha1 not modelled 98.5 13 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 22 d1jx4a1 not modelled 97.4 11 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 23 d1szpa1 not modelled 97.0 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 24 d1k1sa1 not modelled 96.6 11 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 25 d1pzna1 not modelled 96.6 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 26 d1gm5a2 not modelled 96.4 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 27 d2i1qa1 not modelled 96.2 16 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 28 c1b22A_ not modelled 95.7 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 29 d1b22a_ not modelled 95.7 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 30 c3bqsB_ not modelled 95.4 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 31 d2p6ra2 not modelled 95.0 24 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 32 d1doqa_ not modelled 94.9 25 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 33 c1t4gA_ not modelled 94.9 14 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 34 d1z3eb1 not modelled 94.9 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 35 d1lb2b_ not modelled 94.7 28 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 36 d1cooa_ not modelled 94.0 28 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 37 c1gm5A_ not modelled 94.0 36 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 38 c1kdhA_ not modelled 93.7 13 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 39 d1szpb1 not modelled 93.6 24 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 40 d1qw2a_ not modelled 93.5 29 Fold:Hypothetical protein Ta1206 Superfamily:Hypothetical protein Ta1206 Family:Hypothetical protein Ta1206 41 c2ihmA_ not modelled 93.2 21 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 42 d1jmsa3 not modelled 93.1 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 43 d2vana1 not modelled 93.1 43 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 44 d2aq0a1 not modelled 92.9 11 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 45 d2bcqa2 not modelled 92.8 18 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 46 d2fmpa2 not modelled 92.8 39 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 47 c2bcuA_ not modelled 92.6 12 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 48 d2q0zx1 not modelled 92.4 10 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Sec63 N-terminal domain 49 c1nomA_ not modelled 92.2 43 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 50 c2va8A_ not modelled 92.1 24 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 51 c8iczA_ not modelled 92.0 39 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 52 c3im2A_ not modelled 91.9 14 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2; PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form 53 d1kfta_ not modelled 91.5 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 54 c1kftA_ not modelled 91.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 55 c2w9mB_ not modelled 91.4 25 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 56 c2dflA_ not modelled 91.3 21 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament 57 c2kz3A_ not modelled 89.8 24 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 58 c2p6uA_ not modelled 88.5 24 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 59 d2a1ja1 not modelled 88.0 11 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 60 c1wcnA_ not modelled 85.7 26 PDB header:rna-binding protein Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa 61 d1ci4a_ not modelled 84.3 28 Fold:SAM domain-like Superfamily:Barrier-to-autointegration factor, BAF Family:Barrier-to-autointegration factor, BAF 62 c3ldaA_ not modelled 83.9 19 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant 63 d1x2ia1 not modelled 81.4 9 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 64 c2q0zX_ not modelled 80.8 11 PDB header:protein transport Chain: X: PDB Molecule:protein pro2281; PDBTitle: crystal structure of q9p172/sec63 from homo sapiens.2 northeast structural genomics target hr1979. 65 d2bgwa1 not modelled 79.8 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 66 c1szpC_ not modelled 76.8 24 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 67 c2nrzB_ not modelled 76.0 22 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 68 d2a1jb1 not modelled 70.5 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 69 c3ezuA_ not modelled 68.1 21 PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution 70 c1w25B_ not modelled 66.6 15 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 71 d1bvsa2 not modelled 64.0 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 72 c2h5xA_ not modelled 63.8 29 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 73 d1dgsa1 not modelled 62.2 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 74 c1ixrA_ not modelled 59.8 25 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 75 c1dgsB_ not modelled 58.1 19 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 76 c1d8lA_ not modelled 57.8 24 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 77 c1vddC_ not modelled 52.6 25 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 78 c1wwuA_ not modelled 52.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 79 c3i5aA_ not modelled 51.2 18 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 80 c2csdB_ not modelled 50.0 32 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 81 c2owoA_ not modelled 49.9 23 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 82 d1vdda_ not modelled 49.7 25 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 83 c3cmwA_ not modelled 47.7 11 PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 84 c3breA_ not modelled 44.5 25 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 85 d1ixra1 not modelled 41.3 24 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 86 c1s5lu_ not modelled 37.7 13 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 87 d2axtu1 not modelled 37.5 13 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 88 d2edua1 not modelled 37.4 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 89 d2akja2 not modelled 36.2 22 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 90 d1rqpa1 not modelled 32.0 34 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 91 d2bcqa1 not modelled 31.7 28 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 92 d2fmpa1 not modelled 29.1 28 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 93 c2rp5A_ not modelled 27.3 26 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein cep-1; PDBTitle: solution structure of the oligomerization domain in cep-1 94 c1hjpA_ not modelled 27.0 27 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 95 d1cuka2 not modelled 26.5 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 96 d1zj8a2 not modelled 26.5 24 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 97 c1v9pB_ not modelled 25.1 22 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 98 d1jmsa1 not modelled 24.9 6 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 99 d1mo6a1 not modelled 23.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 100 d1nzpa_ not modelled 22.8 28 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 101 d2noha1 not modelled 22.3 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 102 d1ykga1 not modelled 21.3 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 103 d1dk2a_ not modelled 21.1 28 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0