Email l.a.kelley@imperial.ac.uk Description P39369 Date Thu Jan 5 12:00:01 GMT 2012 Unique Job ID 916325a6591dfe4d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wjyA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form 2 c2xzlA_ 100.0 23 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex 3 c2gk7A_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core 4 c3hsiC_ 99.9 11 PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 5 d1byra_ 99.8 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 6 d1v0wa2 99.8 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 7 c1v0sA_ 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf 8 d1xdpa3 99.8 22 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 9 d1v0wa1 99.8 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 10 c3e1sA_ 99.6 20 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 11 c1w36G_ 99.5 17 PDB header:recombination Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex 12 c3lfuA_ 99.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of e. coli uvrd 13 c1pjrA_ 99.3 19 PDB header:helicase Chain: A: PDB Molecule:pcra; PDBTitle: structure of dna helicase 14 c3dmnA_ 99.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna helicase; PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1 15 c1xdoB_ 99.1 16 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 16 c2is6B_ 99.0 21 PDB header:hydrolase/dna Chain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex 17 d1w36d2 99.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 18 c1uaaB_ 98.9 16 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex 19 c2o8rA_ 98.6 15 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 20 d1xdpa4 98.5 20 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 21 d2o8ra3 not modelled 98.4 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 22 d2o8ra4 not modelled 98.2 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 23 c1qhhD_ not modelled 98.1 14 PDB header:hydrolase Chain: D: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 24 c2pjrB_ not modelled 97.9 18 PDB header:hydrolase/dna Chain: B: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 25 d1uaaa2 not modelled 97.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 26 d1w36b2 not modelled 97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 27 d1pjra2 not modelled 97.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 28 c1w36E_ not modelled 97.1 19 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 29 c2c1lA_ not modelled 97.0 22 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease 30 d1w36c2 not modelled 96.5 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 31 c1nopB_ not modelled 95.6 20 PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide 32 d1q32a2 not modelled 95.5 26 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 33 d1jy1a2 not modelled 95.3 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 34 c1w36F_ not modelled 94.8 13 PDB header:recombination Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain; PDBTitle: recbcd:dna complex 35 c1q32C_ not modelled 94.3 29 PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase 36 c3sq3C_ not modelled 93.7 29 PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant 37 d2f5tx2 not modelled 91.3 13 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:TrmB middle domain-like 38 c2pjrF_ not modelled 91.1 20 PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex 39 c2f5tX_ not modelled 88.6 13 PDB header:transcription Chain: X: PDB Molecule:archaeal transcriptional regulator trmb; PDBTitle: crystal structure of the sugar binding domain of the archaeal2 transcriptional regulator trmb 40 d1pzta_ not modelled 87.7 25 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 41 c3lw6A_ not modelled 80.9 17 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 42 c1qhhA_ not modelled 66.1 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 43 d1jy1a1 not modelled 57.9 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 44 c1t3gB_ not modelled 33.0 9 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 45 c1qhhB_ not modelled 29.4 21 PDB header:hydrolase Chain: B: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 46 d1gz0a2 not modelled 23.9 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 47 d1s2da_ not modelled 23.6 21 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 48 d1f8ya_ not modelled 22.1 13 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 49 c3oziB_ not modelled 21.9 13 PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 50 d1qzqa1 not modelled 20.9 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 51 c3fniA_ not modelled 17.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 52 c3dy0B_ not modelled 17.4 33 PDB header:blood clotting, hydrolase inhibitor Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved pci bound to heparin 53 c3p1wA_ not modelled 16.6 20 PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c 54 d1q32a1 not modelled 16.5 24 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 55 c1lq8H_ not modelled 16.3 33 PDB header:blood clotting Chain: H: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved protein c inhibitor 56 c3cgiD_ not modelled 16.2 21 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 57 d1gz0f2 not modelled 15.8 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 58 c3mpbA_ not modelled 15.6 24 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 59 d1o98a1 not modelled 14.5 18 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 60 c3pstA_ not modelled 12.6 20 PDB header:nuclear protein Chain: A: PDB Molecule:protein doa1; PDBTitle: crystal structure of pul and pfu(mutate) domain 61 d1r89a1 not modelled 12.5 24 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 62 c3ia0c_ not modelled 12.4 18 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 63 c3fd0B_ not modelled 12.1 12 PDB header:lyase Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution 64 c3l3fX_ not modelled 12.1 20 PDB header:protein binding Chain: X: PDB Molecule:protein doa1; PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3 65 c2l82A_ not modelled 12.1 14 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 66 c2a5hC_ not modelled 12.0 8 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 67 d1xo1a2 not modelled 12.0 15 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 68 c3ktbD_ not modelled 11.5 19 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 69 c2y0oA_ not modelled 10.9 28 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 70 c2z86D_ not modelled 10.8 15 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 71 d1utaa_ not modelled 9.5 21 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 72 c3ckvA_ not modelled 9.5 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein 73 d1x94a_ not modelled 8.9 17 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 74 d1vmea1 not modelled 8.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 75 d1j5pa4 not modelled 8.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 76 c3kgkA_ not modelled 8.5 15 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 77 c2r60A_ not modelled 8.4 9 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 78 c3iabB_ not modelled 8.3 25 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna 79 c2bcwC_ not modelled 8.2 13 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: coordinates of the n-terminal domain of ribosomal protein2 l11,c-terminal domain of ribosomal protein l7/l12 and a3 portion of the g' domain of elongation factor g, as fitted4 into cryo-em map of an escherichia coli 70s*ef-5 g*gdp*fusidic acid complex 80 c2x0dA_ not modelled 7.9 7 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 81 d1o0sa2 not modelled 7.6 12 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 82 d1fyva_ not modelled 7.5 11 Fold:Flavodoxin-like Superfamily:Toll/Interleukin receptor TIR domain Family:Toll/Interleukin receptor TIR domain 83 c2zrrA_ not modelled 7.5 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 84 d1w36d1 not modelled 7.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 85 c3h16A_ not modelled 6.1 16 PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans 86 c2dc1A_ not modelled 6.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 87 c3cseA_ not modelled 6.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 88 c3nklA_ not modelled 5.9 15 PDB header:oxidoreductase/lyase Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase; PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri 89 c3cvjB_ not modelled 5.7 17 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 90 c2ihnA_ not modelled 5.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 91 c3ht4B_ not modelled 5.5 14 PDB header:lyase Chain: B: PDB Molecule:aluminum resistance protein; PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213 92 c3nkuA_ not modelled 5.5 20 PDB header:protein transport Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila 93 c2k19A_ not modelled 5.4 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi 94 c2bpbB_ not modelled 5.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 95 c1o98A_ not modelled 5.2 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 96 c2x3yA_ not modelled 5.2 20 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei