Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	I	R	G	G	Q	R	R	K	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																											?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	P	R	P	K	T	L	F	E	P	G	E	M	V	R	V	N	D	G	P	F	A	D	F	N	G	V	V	E	E	V	D	Y	E	K	S	R	L	K	V	S	V	S	I	F	G	R	A	T	P	V	E	L	D	F	S	Q	V	E	K
Secondary structure
SS confidence
Disorder		?	?	?	?																																									?	?	?	?									?		?	?
Disorder confidence
		.
Sequence		A
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1m1g chain B Region: 3 - 180 Aligned: 175 Modelled: 178 Confidence: 100.0% Identity: 42% PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Phyre2 PDB 2xhc chain A Region: 7 - 180 Aligned: 169 Modelled: 170 Confidence: 100.0% Identity: 53% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) Phyre2 PDB 2oug chain C Region: 7 - 174 Aligned: 140 Modelled: 142 Confidence: 100.0% Identity: 18% PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution Phyre2 PDB 2k06 chain A Region: 1 - 123 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 100% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg Phyre2 PDB 3p8b chain B Region: 7 - 180 Aligned: 142 Modelled: 155 Confidence: 100.0% Identity: 20% PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Phyre2 PDB 1nz8 chain A Region: 8 - 116 Aligned: 108 Modelled: 109 Confidence: 99.9% Identity: 39% Fold: Ferredoxin-like Superfamily: N-utilization substance G protein NusG, N-terminal domain Family: N-utilization substance G protein NusG, N-terminal domain Phyre2 PDB 1m1h chain A domain 2 Region: 3 - 117 Aligned: 99 Modelled: 100 Confidence: 99.9% Identity: 31% Fold: Ferredoxin-like Superfamily: N-utilization substance G protein NusG, N-terminal domain Family: N-utilization substance G protein NusG, N-terminal domain Phyre2 PDB 1nz9 chain A Region: 127 - 181 Aligned: 55 Modelled: 55 Confidence: 99.6% Identity: 62% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 2jvv chain A Region: 123 - 181 Aligned: 59 Modelled: 59 Confidence: 99.6% Identity: 100% PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain Phyre2 PDB 2kvq chain G Region: 123 - 181 Aligned: 59 Modelled: 59 Confidence: 99.6% Identity: 100% PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex Phyre2 PDB 1npp chain A domain 2 Region: 124 - 180 Aligned: 57 Modelled: 57 Confidence: 99.5% Identity: 63% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: N-utilization substance G protein NusG, C-terminal domain Phyre2 PDB 3ewg chain A Region: 10 - 112 Aligned: 78 Modelled: 84 Confidence: 98.3% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii Phyre2 PDB 2exu chain A Region: 2 - 112 Aligned: 91 Modelled: 97 Confidence: 98.3% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Phyre2 PDB 3h7h chain B Region: 5 - 112 Aligned: 90 Modelled: 94 Confidence: 98.2% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) Phyre2 PDB 2e6z chain A Region: 125 - 180 Aligned: 54 Modelled: 56 Confidence: 97.0% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1vqo chain T domain 1 Region: 125 - 160 Aligned: 36 Modelled: 36 Confidence: 96.9% Identity: 33% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: Ribosomal proteins L24p and L21e Phyre2 PDB 4a1c chain S Region: 125 - 160 Aligned: 36 Modelled: 36 Confidence: 96.8% Identity: 22% PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 3iz5 chain Y Region: 125 - 160 Aligned: 36 Modelled: 36 Confidence: 96.7% Identity: 19% PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2zkr chain T Region: 125 - 160 Aligned: 36 Modelled: 36 Confidence: 96.7% Identity: 19% PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2ckk chain A Region: 129 - 180 Aligned: 52 Modelled: 52 Confidence: 96.6% Identity: 13% PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. Phyre2 1 c1m1gB_ 2 c2xhcA_ 3 c2ougC_ 4 c2k06A_ 5 c3p8bB_ 6 d1nz8a_ 7 d1m1ha2 8 d1nz9a_ 9 c2jvvA_ 10 c2kvqG_ 11 d1nppa2 12 c3ewgA_ 13 c2exuA_ 14 c3h7hB_ 15 c2e6zA_ 16 d1vqot1 17 c4a1cS_ 18 c3iz5Y_ 19 c2zkrt_ 20 c2ckkA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1m1gB_ 100.0 42 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 2 c2xhcA_ 100.0 53 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 3 c2ougC_ 100.0 18 PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution 4 c2k06A_ 100.0 100 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of the aminoterminal domain of e. coli2 nusg 5 c3p8bB_ 100.0 20 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 6 d1nz8a_ 99.9 39 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 7 d1m1ha2 99.9 31 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 8 d1nz9a_ 99.6 62 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 9 c2jvvA_ 99.6 100 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 10 c2kvqG_ 99.6 100 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 11 d1nppa2 99.5 63 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 12 c3ewgA_ 98.3 23 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 13 c2exuA_ 98.3 13 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 14 c3h7hB_ 98.2 16 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 15 c2e6zA_ 97.0 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 16 d1vqot1 96.9 33 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 17 c4a1cS_ 96.8 22 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 18 c3iz5Y_ 96.7 19 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 19 c2zkrt_ 96.7 19 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 20 c2ckkA_ 96.6 13 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 21 c2e70A_ not modelled 96.4 27 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 22 d2zjrr1 not modelled 96.4 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 23 d2do3a1 not modelled 96.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 24 c1s1iU_ not modelled 94.8 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 25 d2gycs1 not modelled 94.4 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 26 c3bboW_ not modelled 93.9 18 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 27 d1ib8a1 not modelled 93.1 24 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 28 d2j01y1 not modelled 92.7 30 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 29 c2ftcN_ not modelled 89.8 27 PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 30 c2jz2A_ not modelled 85.7 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 31 c3iz5N_ not modelled 76.7 27 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 32 c4a19F_ not modelled 74.6 18 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 33 d2joya1 not modelled 70.3 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 34 c4a18N_ not modelled 70.1 21 PDB header:ribosome Chain: N: PDB Molecule:rpl27; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 35 c3izcN_ not modelled 66.8 17 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 36 c3kbgA_ not modelled 64.4 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 37 d1vqoq1 not modelled 57.3 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 38 c2xzmW_ not modelled 51.4 15 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 39 c3iz6D_ not modelled 51.2 23 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 40 d1nxza1 not modelled 45.3 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 41 d2vv5a1 not modelled 44.4 32 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 42 d1vhka1 not modelled 43.0 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 43 c1ib8A_ not modelled 39.7 24 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 44 d2pu9b1 not modelled 36.1 33 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain 45 c2pmzV_ not modelled 35.1 17 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 46 c3qz9D_ not modelled 31.2 16 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 47 c2eqmA_ not modelled 29.0 23 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 48 c3izbD_ not modelled 26.8 18 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 49 c3kw2A_ not modelled 25.1 24 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 50 d1psea_ not modelled 23.6 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 51 d2coya1 not modelled 22.6 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 52 d1a8pa1 not modelled 22.5 21 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 53 d2hqha1 not modelled 22.3 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 d1qp3a_ not modelled 21.7 24 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 55 d1ixda_ not modelled 21.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 56 c3izca_ not modelled 20.3 23 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 57 c2dxcG_ not modelled 19.7 30 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 58 c3q1jA_ not modelled 19.2 21 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 59 d1h3ga1 not modelled 18.9 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 60 c2eqjA_ not modelled 17.8 17 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2 61 d1ugpb_ not modelled 17.8 12 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 62 c2y35A_ not modelled 17.8 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex 63 c3iz5a_ not modelled 17.5 33 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 64 d2cowa1 not modelled 17.5 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 65 c3cgnA_ not modelled 17.2 16 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 66 d2zjrm1 not modelled 17.0 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 67 d1dzfa2 not modelled 15.8 19 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 68 c2kr7A_ not modelled 15.5 9 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 69 d1v29b_ not modelled 15.4 15 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 70 c3pifD_ not modelled 15.2 20 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 71 c2zkrq_ not modelled 15.1 13 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 72 c3izcG_ not modelled 14.3 19 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 73 d1eika_ not modelled 13.2 14 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 74 d2zgwa1 not modelled 12.8 38 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 75 d1efca1 not modelled 12.6 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 76 c2kfwA_ not modelled 12.1 12 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 77 d2gycn1 not modelled 11.8 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 78 c2k8iA_ not modelled 11.4 11 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 79 d1gxie_ not modelled 11.4 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 80 c1nwxN_ not modelled 11.1 30 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 81 d2j01t1 not modelled 10.9 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 82 c3izcU_ not modelled 10.7 17 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 83 d1gawa1 not modelled 10.7 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 84 c2vv5D_ not modelled 10.6 20 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 85 d1fr3a_ not modelled 10.4 14 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 86 c1z85B_ not modelled 10.2 11 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 87 c2k5hA_ not modelled 10.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 88 c2e5pA_ not modelled 10.1 16 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein) 89 d2ahob2 not modelled 9.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 d1jb0e_ not modelled 9.0 22 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 91 d1wjqa_ not modelled 8.6 23 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 92 d1whka_ not modelled 8.5 9 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 93 c2k52A_ not modelled 8.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 94 d1fdra1 not modelled 8.2 29 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c2khjA_ not modelled 8.2 17 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 96 d1hmja_ not modelled 8.1 24 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 97 d1fnda1 not modelled 8.0 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 d1mhna_ not modelled 7.9 15 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 99 c2vc8A_ not modelled 7.7 20 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0