Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP71241
DateThu Jan 5 12:12:36 GMT 2012
Unique Job ID8f82f087a9b3ebf2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3nklA_
Top template information
PDB header:oxidoreductase/lyase
Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase;
PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri
Confidence and coverage
Confidence: 99.3% Coverage: 24%
113 residues ( 24% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQ
Secondary structure 








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Disorder  ?????????

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   .........70.........80.........90.........100.........110.........120
Sequence  MLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYALTS
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   .........130.........140.........150.........160.........170.........180
Sequence  IGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDP
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   .........190.........200.........210.........220.........230.........240
Sequence  KPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDV
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   .........250.........260.........270.........280.........290.........300
Sequence  FTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAV
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   .........310.........320.........330.........340.........350.........360
Sequence  KLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTS
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   .........370.........380.........390.........400.........410.........420
Sequence  LDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGE
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   .........430.........440.........450.........460....
Sequence  TDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY
Secondary structure 










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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3nkl chain A

3D model

Region: 143 - 257
Aligned: 113
Modelled: 115
Confidence: 99.3%
Identity: 19%
PDB header:oxidoreductase/lyase
Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase;
PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri

Phyre2

PDB 3ket chain A

3D model

Region: 143 - 236
Aligned: 90
Modelled: 94
Confidence: 98.2%
Identity: 9%
PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator

Phyre2

PDB 2dt5 chain A

3D model

Region: 143 - 254
Aligned: 105
Modelled: 112
Confidence: 98.1%
Identity: 14%
PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8

Phyre2

PDB 2vt2 chain A

3D model

Region: 133 - 236
Aligned: 90
Modelled: 104
Confidence: 97.8%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: structure and functional properties of the bacillus2 subtilis transcriptional repressor rex

Phyre2

PDB 2dt5 chain A domain 2

3D model

Region: 146 - 254
Aligned: 102
Modelled: 109
Confidence: 97.5%
Identity: 15%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Transcriptional repressor Rex, C-terminal domain

Phyre2

PDB 3evn chain A

3D model

Region: 146 - 278
Aligned: 128
Modelled: 133
Confidence: 97.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r

Phyre2

PDB 1euc chain A domain 1

3D model

Region: 144 - 237
Aligned: 85
Modelled: 91
Confidence: 96.9%
Identity: 12%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 2yv1 chain A

3D model

Region: 142 - 237
Aligned: 87
Modelled: 90
Confidence: 96.8%
Identity: 15%
PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661

Phyre2

PDB 2o48 chain X

3D model

Region: 146 - 278
Aligned: 130
Modelled: 133
Confidence: 96.8%
Identity: 13%
PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase

Phyre2

PDB 3db2 chain C

3D model

Region: 141 - 236
Aligned: 88
Modelled: 95
Confidence: 96.8%
Identity: 14%
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution

Phyre2

PDB 1oi7 chain A domain 1

3D model

Region: 143 - 237
Aligned: 86
Modelled: 92
Confidence: 96.6%
Identity: 12%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 3kux chain A

3D model

Region: 141 - 278
Aligned: 133
Modelled: 137
Confidence: 96.6%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis

Phyre2

PDB 3ec7 chain C

3D model

Region: 146 - 278
Aligned: 126
Modelled: 133
Confidence: 96.6%
Identity: 13%
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2

Phyre2

PDB 2nu7 chain A domain 1

3D model

Region: 143 - 237
Aligned: 86
Modelled: 92
Confidence: 96.5%
Identity: 15%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: CoA-binding domain

Phyre2

PDB 3m2t chain A

3D model

Region: 146 - 236
Aligned: 86
Modelled: 91
Confidence: 96.5%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum

Phyre2

PDB 1lc3 chain A

3D model

Region: 140 - 278
Aligned: 134
Modelled: 139
Confidence: 96.5%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:biliverdin reductase a;
PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex

Phyre2

PDB 2py6 chain A domain 1

3D model

Region: 134 - 236
Aligned: 97
Modelled: 100
Confidence: 96.5%
Identity: 11%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: FkbM-like

Phyre2

PDB 3euw chain B

3D model

Region: 146 - 236
Aligned: 83
Modelled: 91
Confidence: 96.4%
Identity: 13%
PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032

Phyre2

PDB 2glx chain D

3D model

Region: 145 - 278
Aligned: 129
Modelled: 134
Confidence: 96.4%
Identity: 12%
PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase

Phyre2

PDB 3e18 chain A

3D model

Region: 146 - 236
Aligned: 86
Modelled: 91
Confidence: 96.3%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua

Phyre2

PDB 2dbq chain A

3D model

Region: 113 - 219
Aligned: 101
Modelled: 100
Confidence: 83.9%
Identity: 10%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxylate reductase;
PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41)

Phyre2
1

c3nklA_
2

c3ketA_
3

c2dt5A_
4

c2vt2A_
5

d2dt5a2
6

c3evnA_
7

d1euca1
8

c2yv1A_
9

c2o48X_
10

c3db2C_
11

d1oi7a1
12

c3kuxA_
13

c3ec7C_
14

d2nu7a1
15

c3m2tA_
16

c1lc3A_
17

d2py6a1
18

c3euwB_
19

c2glxD_
20

c3e18A_
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c2dbqA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3nklA_



99.3 19 PDB header:oxidoreductase/lyase
Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase;
PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri
2c3ketA_



98.2 9 PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
3c2dt5A_



98.1 14 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
4c2vt2A_



97.8 11 PDB header:transcription
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: structure and functional properties of the bacillus2 subtilis transcriptional repressor rex
5d2dt5a2



97.5 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Transcriptional repressor Rex, C-terminal domain
6c3evnA_



97.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
7d1euca1



96.9 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
8c2yv1A_



96.8 15 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661
9c2o48X_



96.8 13 PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase
10c3db2C_



96.8 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
11d1oi7a1



96.6 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
12c3kuxA_



96.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
13c3ec7C_



96.6 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2
14d2nu7a1



96.5 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
15c3m2tA_



96.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
16c1lc3A_



96.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:biliverdin reductase a;
PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex
17d2py6a1



96.5 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:FkbM-like
18c3euwB_



96.4 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
19c2glxD_



96.4 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase
20c3e18A_



96.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
21c3e82A_



not modelled 96.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae
22c2fpgA_



not modelled 96.3 12 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [gdp-forming] alpha-chain,
PDBTitle: crystal structure of pig gtp-specific succinyl-coa2 synthetase in complex with gdp
23c2q4eB_



not modelled 96.2 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable oxidoreductase at4g09670;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
24c2ho3D_



not modelled 96.1 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
25c3q2kB_



not modelled 96.1 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca
26d1kjqa2



not modelled 96.1 19 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
27c3e9mC_



not modelled 96.1 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
28c3ezyB_



not modelled 96.1 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
29c2nu8D_



not modelled 96.1 16 PDB header:ligase
Chain: D: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase
30c1zh8B_



not modelled 96.1 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution
31c3fd8A_



not modelled 96.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
32c3rbvA_



not modelled 96.0 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp
33d1ydwa1



not modelled 96.0 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
34c3ceaA_



not modelled 96.0 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
35d1zh8a1



not modelled 95.9 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
36d2nvwa1



not modelled 95.9 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
37c3fhlC_



not modelled 95.9 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343
38d1a9xa4



not modelled 95.8 20 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
39c3dapB_



not modelled 95.8 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase;
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
40c2ixaA_



not modelled 95.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
41c3f4lF_



not modelled 95.7 12 PDB header:oxidoreductase
Chain: F: PDB Molecule:putative oxidoreductase yhhx;
PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647
42c3nt5B_



not modelled 95.7 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose
43c3c1aB_



not modelled 95.7 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
44c3uuwB_



not modelled 95.7 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.
45c3gfgB_



not modelled 95.6 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
46c2ip4A_



not modelled 95.6 14 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8
47d1f06a1



not modelled 95.5 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
48d1a9xa3



not modelled 95.5 11 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
49c2yv2A_



not modelled 95.4 12 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1
50c3bioB_



not modelled 95.4 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83
51c1h6dL_



not modelled 95.3 14 PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
52c1ofgF_



not modelled 95.3 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase
53c3moiA_



not modelled 95.2 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
54d2d59a1



not modelled 95.2 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
55c1e5lA_



not modelled 95.2 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
56d1y81a1



not modelled 95.2 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
57c3do5A_



not modelled 95.1 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
58c1oi7A_



not modelled 95.0 15 PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus
59c2qk4A_



not modelled 95.0 13 PDB header:ligase
Chain: A: PDB Molecule:trifunctional purine biosynthetic protein adenosine-3;
PDBTitle: human glycinamide ribonucleotide synthetase
60c1drwA_



not modelled 95.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
61c2p2sA_



not modelled 94.9 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution
62d1ryda1



not modelled 94.8 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
63c2nvwB_



not modelled 94.8 10 PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
64c2dc1A_



not modelled 94.8 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
65c3v5nA_



not modelled 94.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
66d1lc0a1



not modelled 94.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
67c1evjC_



not modelled 94.4 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d
68c3a14B_



not modelled 94.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
69c2dzdB_



not modelled 94.3 19 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase
70c3btuD_



not modelled 94.3 16 PDB header:transcription
Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k]
71c3dtyA_



not modelled 94.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae
72d1gsoa2



not modelled 94.3 15 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
73c2vpqA_



not modelled 94.2 15 PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of biotin carboxylase from s. aureus2 complexed with amppnp
74d1yl7a1



not modelled 94.2 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
75c3ouzA_



not modelled 94.1 12 PDB header:ligase
Chain: A: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni
76c3ic5A_



not modelled 94.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
77c2z2vA_



not modelled 94.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
78c3lp8A_



not modelled 94.0 16 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase;
PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis
79c2dwcB_



not modelled 93.9 14 PDB header:transferase
Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
80c3ndjA_



not modelled 93.8 12 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
81c1tltB_



not modelled 93.7 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)
82c1kjjA_



not modelled 93.7 16 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2;
PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s
83c2axqA_



not modelled 93.6 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
84d2czca2



not modelled 93.6 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
85c2ys6A_



not modelled 93.5 16 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
86c1m6vE_



not modelled 93.5 10 PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
87c2yyaB_



not modelled 93.4 14 PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: crystal structure of gar synthetase from aquifex aeolicus
88c2ph5A_



not modelled 93.3 11 PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
89d2jfga1



not modelled 93.1 14 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
90c2xd4A_



not modelled 93.1 14 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase;
PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase
91c1xeaD_



not modelled 93.0 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
92d1pjqa1



not modelled 93.0 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
93d1e5qa1



not modelled 92.9 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
94d1iuka_



not modelled 92.9 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
95d1h6da1



not modelled 92.9 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
96c2jcyA_



not modelled 92.8 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis
97c3ip3D_



not modelled 92.7 11 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, putative;
PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima
98d2csua1



not modelled 92.5 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
99c3ijpA_



not modelled 92.4 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
100c2duwA_



not modelled 92.3 16 PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
101d1cf2o1



not modelled 92.3 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
102c2gpwC_



not modelled 92.2 11 PDB header:ligase
Chain: C: PDB Molecule:biotin carboxylase;
PDBTitle: crystal structure of the biotin carboxylase subunit, f363a2 mutant, of acetyl-coa carboxylase from escherichia coli.
103c1gsoA_



not modelled 92.1 20 PDB header:ligase
Chain: A: PDB Molecule:protein (glycinamide ribonucleotide synthetase);
PDBTitle: glycinamide ribonucleotide synthetase (gar-syn) from e.2 coli.
104c3mtjA_



not modelled 91.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
105d1ebfa1



not modelled 91.9 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
106d1diha1



not modelled 91.6 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
107c3g8cB_



not modelled 91.6 12 PDB header:ligase
Chain: B: PDB Molecule:biotin carboxylase;
PDBTitle: crystal stucture of biotin carboxylase in complex with2 biotin, bicarbonate, adp and mg ion
108c1ulzA_



not modelled 91.4 13 PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain;
PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase
109c3ktdC_



not modelled 91.2 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution
110c3gidB_



not modelled 91.1 18 PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: the biotin carboxylase (bc) domain of human acetyl-coa2 carboxylase 2 (acc2) in complex with soraphen a
111c1j5pA_



not modelled 91.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate dehydrogenase;
PDBTitle: crystal structure of aspartate dehydrogenase (tm1643) from thermotoga2 maritima at 1.9 a resolution
112c3uw3A_



not modelled 90.9 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of an aspartate-semialdehyde dehydrogenase from2 burkholderia thailandensis
113c2ozpA_



not modelled 90.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: crystal structure of n-acetyl-gamma-glutamyl-phosphate reductase2 (ttha1904) from thermus thermophilus
114c2csuB_



not modelled 90.7 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
115c1ebuA_



not modelled 90.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase complex with nad analogue and l-2 homoserine
116c1mb4B_



not modelled 90.6 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide
117c3u9sE_



not modelled 90.5 17 PDB header:ligase
Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
118c2qx7A_



not modelled 90.5 13 PDB header:plant protein
Chain: A: PDB Molecule:eugenol synthase 1;
PDBTitle: structure of eugenol synthase from ocimum basilicum
119d1pqua1



not modelled 90.5 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
120c1t4bB_



not modelled 90.3 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase;
PDBTitle: 1.6 angstrom structure of esherichia coli aspartate-2 semialdehyde dehydrogenase.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0