Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00393
DateThu Jan 5 10:56:36 GMT 2012
Unique Job ID89b96c551784631f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3hyxC_
Top template information
PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfide-quinone reductase;
PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c
Confidence and coverage
Confidence:100.0% Coverage: 89%
387 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLD
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Disorder  ?????




















????





























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   .........70.........80.........90.........100.........110.........120
Sequence  EGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVM
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??????????










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   .........130.........140.........150.........160.........170.........180
Sequence  ALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGA
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???????











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   .........190.........200.........210.........220.........230.........240
Sequence  TGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLG
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?????
















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   .........250.........260.........270.........280.........290.........300
Sequence  VRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEP
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?













































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   .........310.........320.........330.........340.........350.........360
Sequence  TLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQMNGKPLKNYQYK
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?





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   .........370.........380.........390.........400.........410.........420
Sequence  DHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLV
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??????





















?











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   .........430....
Sequence  GSINRVIRPRLKLH
Secondary structure 



SS confidence 













Disorder 




?
???
???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3hyx chain C

3D model

Region: 6 - 419
Aligned: 387
Modelled: 412
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfide-quinone reductase;
PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c

Phyre2

PDB 3kpg chain A

3D model

Region: 5 - 425
Aligned: 399
Modelled: 421
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfide-quinone reductase, putative;
PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone

Phyre2

PDB 1fcd chain B

3D model

Region: 6 - 416
Aligned: 376
Modelled: 411
Confidence: 100.0%
Identity: 17%
PDB header:electron transport(flavocytochrome)
Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin-
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution

Phyre2

PDB 3nta chain A

3D model

Region: 5 - 373
Aligned: 329
Modelled: 349
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase

Phyre2

PDB 3icr chain A

3D model

Region: 6 - 368
Aligned: 323
Modelled: 347
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd

Phyre2

PDB 1yqz chain A

3D model

Region: 6 - 368
Aligned: 321
Modelled: 348
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution

Phyre2

PDB 1gv4 chain A

3D model

Region: 1 - 361
Aligned: 321
Modelled: 346
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)

Phyre2

PDB 3kd9 chain B

3D model

Region: 4 - 373
Aligned: 304
Modelled: 333
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii

Phyre2

PDB 3iwa chain A

3D model

Region: 6 - 373
Aligned: 297
Modelled: 321
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris

Phyre2

PDB 3oc4 chain A

3D model

Region: 7 - 373
Aligned: 305
Modelled: 332
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583

Phyre2

PDB 2gr2 chain A

3D model

Region: 1 - 369
Aligned: 315
Modelled: 343
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)

Phyre2

PDB 3fg2 chain P

3D model

Region: 6 - 375
Aligned: 320
Modelled: 341
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: P: PDB Molecule:putative rubredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris

Phyre2

PDB 2bcp chain A

3D model

Region: 1 - 373
Aligned: 331
Modelled: 357
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide

Phyre2

PDB 3h8l chain A

3D model

Region: 7 - 371
Aligned: 341
Modelled: 358
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism

Phyre2

PDB 1q1w chain A

3D model

Region: 3 - 375
Aligned: 323
Modelled: 341
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida

Phyre2

PDB 3lxd chain A

3D model

Region: 3 - 369
Aligned: 318
Modelled: 335
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans

Phyre2

PDB 1xhc chain A

3D model

Region: 7 - 398
Aligned: 332
Modelled: 359
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase /nitrite reductase;
PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001

Phyre2

PDB 1nhq chain A

3D model

Region: 5 - 373
Aligned: 329
Modelled: 346
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase (h2o2(a))
Chain: A: PDB Molecule:nadh peroxidase;
PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303

Phyre2

PDB 2cdu chain B

3D model

Region: 5 - 373
Aligned: 327
Modelled: 351
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph oxidase;
PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis

Phyre2

PDB 3ef6 chain A

3D model

Region: 7 - 373
Aligned: 322
Modelled: 328
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+)
PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase

Phyre2
1

c3hyxC_
2

c3kpgA_
3

c1fcdB_
4

c3ntaA_
5

c3icrA_
6

c1yqzA_
7

c1gv4A_
8

c3kd9B_
9

c3iwaA_
10

c3oc4A_
11

c2gr2A_
12

c3fg2P_
13

c2bcpA_
14

c3h8lA_
15

c1q1wA_
16

c3lxdA_
17

c1xhcA_
18

c1nhqA_
19

c2cduB_
20

c3ef6A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3hyxC_



100.0 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfide-quinone reductase;
PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c
2c3kpgA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfide-quinone reductase, putative;
PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
3c1fcdB_



100.0 17 PDB header:electron transport(flavocytochrome)
Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin-
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
4c3ntaA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
5c3icrA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
6c1yqzA_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution
7c1gv4A_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)
8c3kd9B_



100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
9c3iwaA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris
10c3oc4A_



100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583
11c2gr2A_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)
12c3fg2P_



100.0 24 PDB header:oxidoreductase
Chain: P: PDB Molecule:putative rubredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris
13c2bcpA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide
14c3h8lA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism
15c1q1wA_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida
16c3lxdA_



100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans
17c1xhcA_



100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase /nitrite reductase;
PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001
18c1nhqA_



100.0 18 PDB header:oxidoreductase (h2o2(a))
Chain: A: PDB Molecule:nadh peroxidase;
PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
19c2cduB_



100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph oxidase;
PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
20c3ef6A_



100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+)
PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase
21c2v3aA_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin reductase;
PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa.
22c3cgdB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i;
PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
23c1m6iA_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:programmed cell death protein 8;
PDBTitle: crystal structure of apoptosis inducing factor (aif)
24c2v6oA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
25c1xdiA_



not modelled 100.0 22 PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
26c1tytA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
27c2eq7B_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
28c1hyuA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
29c3kljA_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal
PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum
30c1lvlA_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
31c1ndaD_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:trypanothione oxidoreductase;
PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state
32c1zx9A_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
33c1dxlC_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
34c1ojtA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
35c2w0hA_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
36c1gthD_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
37c3urhB_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
38c1geuA_



not modelled 100.0 24 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
39c1bwcA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
40c2r9zB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione amide reductase;
PDBTitle: glutathione amide reductase from chromatium gracile
41c2a8xA_



not modelled 100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
42c2eq8E_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
43c1v59B_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
44c2qaeA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
45c3k30B_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
46c1djnB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
47c3o0hA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
48c1ebdB_



not modelled 100.0 22 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
49c2c3dB_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
50c3ic9D_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
51c2vdcI_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
52c1zmcG_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
53c3dgzA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
54c1zkqA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
55c2nvkX_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
56c1onfA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of plasmodium falciparum glutathione reductase
57c2hqmB_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
58c2cfyB_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
59c3l8kB_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
60c1lpfB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
61c1ps9A_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
62c1vdcA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dependent thioredoxin reductase;
PDBTitle: structure of nadph dependent thioredoxin reductase
63c2zbwA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
64c3d8xB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
65c1cjcA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (adrenodoxin reductase);
PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems
66c3ab1B_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
67c3r9uA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
68c1lqtB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:fpra;
PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase
69c3lzxB_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase 2;
PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)
70c2a87A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase
71c3d1cA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing putative monooxygenase;
PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution
72c3fbsB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
73c3f8rD_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
74c3ctyA_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
75c1f6mF_



not modelled 99.9 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
76c1fl2A_



not modelled 99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli
77c2q0lA_



not modelled 99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
78c3s5wB_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-ornithine 5-monooxygenase;
PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa
79c2vq7B_



not modelled 99.9 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: bacterial flavin-containing monooxygenase in complex with2 nadp: native data
80c3gwdA_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase;
PDBTitle: closed crystal structure of cyclohexanone monooxygenase
81c2q7vA_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
82c1x31A_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
83c1vqwB_



not modelled 99.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
84c1y56A_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
85c1w4xA_



not modelled 99.9 21 PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
86d1fcda1



not modelled 99.9 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
87d1d7ya1



not modelled 99.9 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
88d1q1ra1



not modelled 99.9 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
89d1m6ia1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
90d1gv4a1



not modelled 99.8 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
91d1xhca1



not modelled 99.8 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
92d1nhpa1



not modelled 99.8 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
93d3grsa1



not modelled 99.8 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
94d1dxla1



not modelled 99.8 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
95d1xdia1



not modelled 99.8 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
96d1h6va1



not modelled 99.7 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
97d3lada1



not modelled 99.7 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
98d1lpfa1



not modelled 99.7 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
99d1feca1



not modelled 99.7 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
100d1mo9a1



not modelled 99.7 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
101d1d7ya2



not modelled 99.7 29 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
102d1lqta2



not modelled 99.7 15 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
103d1v59a1



not modelled 99.7 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
104d1ojta1



not modelled 99.7 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
105d1lvla1



not modelled 99.7 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
106d1xhca2



not modelled 99.6 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
107d1reoa1



not modelled 99.6 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
108d2iida1



not modelled 99.6 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
109d1d4ca2



not modelled 99.6 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
110d2gqfa1



not modelled 99.6 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
111d1ebda1



not modelled 99.6 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
112d1aoga1



not modelled 99.6 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
113c1chuA_



not modelled 99.6 17 PDB header:flavoenzyme
Chain: A: PDB Molecule:protein (l-aspartate oxidase);
PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family
114d1djqa3



not modelled 99.6 16 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
115c2e4gB_



not modelled 99.6 19 PDB header:biosynthetic protein, flavoprotein
Chain: B: PDB Molecule:tryptophan halogenase;
PDBTitle: rebh with bound l-trp
116d1qo8a2



not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
117d1ps9a3



not modelled 99.5 20 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:N-terminal domain of adrenodoxin reductase-like
118c3cesB_



not modelled 99.5 20 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
119c3g05B_



not modelled 99.5 19 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
120d1o5wa1



not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0