Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP55138
DateThu Jan 5 12:06:08 GMT 2012
Unique Job ID899875d7530be5da

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3gbtA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
Confidence and coverage
Confidence:100.0% Coverage: 92%
452 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFA
Secondary structure 
SS confidence 
Disorder  ???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVA
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLL
Secondary structure 
SS confidence 
Disorder 
??
???
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNN
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  YDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  GLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGEL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490..
Sequence  GNVDSIQSWSNA
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3gbt chain A

3D model

Region: 2 - 472
Aligned: 452
Modelled: 467
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus

Phyre2

PDB 3jvp chain A

3D model

Region: 4 - 475
Aligned: 465
Modelled: 472
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans

Phyre2

PDB 3ifr chain B

3D model

Region: 4 - 471
Aligned: 444
Modelled: 468
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum

Phyre2

PDB 3gg4 chain B

3D model

Region: 2 - 474
Aligned: 466
Modelled: 473
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis

Phyre2

PDB 3flc chain X

3D model

Region: 2 - 468
Aligned: 446
Modelled: 467
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol

Phyre2

PDB 2d4w chain A

3D model

Region: 4 - 471
Aligned: 446
Modelled: 457
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060

Phyre2

PDB 2nlx chain A

3D model

Region: 6 - 469
Aligned: 439
Modelled: 464
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase

Phyre2

PDB 3hz6 chain A

3D model

Region: 2 - 465
Aligned: 451
Modelled: 464
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum

Phyre2

PDB 2zf5 chain O

3D model

Region: 2 - 472
Aligned: 447
Modelled: 460
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon

Phyre2

PDB 3g25 chain B

3D model

Region: 2 - 471
Aligned: 449
Modelled: 469
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.

Phyre2

PDB 2dpn chain B

3D model

Region: 5 - 471
Aligned: 443
Modelled: 455
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8

Phyre2

PDB 2w40 chain C

3D model

Region: 2 - 465
Aligned: 445
Modelled: 452
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol

Phyre2

PDB 1glb chain G

3D model

Region: 4 - 466
Aligned: 435
Modelled: 463
Confidence: 100.0%
Identity: 19%
PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase

Phyre2

PDB 3ezw chain D

3D model

Region: 2 - 465
Aligned: 426
Modelled: 449
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices

Phyre2

PDB 1xup chain O

3D model

Region: 5 - 461
Aligned: 436
Modelled: 433
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol

Phyre2

PDB 2cgk chain B

3D model

Region: 2 - 455
Aligned: 430
Modelled: 454
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.

Phyre2

PDB 3i8b chain A

3D model

Region: 2 - 454
Aligned: 424
Modelled: 445
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis

Phyre2

PDB 3h6e chain B

3D model

Region: 1 - 466
Aligned: 424
Modelled: 453
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans

Phyre2

PDB 2p3r chain A domain 1

3D model

Region: 2 - 216
Aligned: 208
Modelled: 215
Confidence: 100.0%
Identity: 22%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2

PDB 1r59 chain O domain 1

3D model

Region: 4 - 219
Aligned: 202
Modelled: 205
Confidence: 100.0%
Identity: 22%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2
1
c3gbtA_
2
c3jvpA_
3
c3ifrB_
4
c3gg4B_
5
c3flcX_
6
c2d4wA_
7
c2nlxA_
8
c3hz6A_
9
c2zf5O_
10
c3g25B_
11
c2dpnB_
12
c2w40C_
13
c1glbG_
14
c3ezwD_
15
c1xupO_
16
c2cgkB_
17
c3i8bA_
18
c3h6eB_
19
d2p3ra1
20
d1r59o1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3gbtA_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
2c3jvpA_
100.0 22 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
3c3ifrB_
100.0 24 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
4c3gg4B_
100.0 18 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
5c3flcX_
100.0 21 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
6c2d4wA_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
7c2nlxA_
100.0 22 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
8c3hz6A_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
9c2zf5O_
100.0 22 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
10c3g25B_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
11c2dpnB_
100.0 21 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
12c2w40C_
100.0 20 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
13c1glbG_
100.0 19 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
14c3ezwD_
100.0 20 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
15c1xupO_
100.0 21 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
16c2cgkB_
100.0 16 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
17c3i8bA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
18c3h6eB_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
19d2p3ra1
100.0 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
20d1r59o1
100.0 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
21d2p3ra2
not modelled 100.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
22d1r59o2
not modelled 100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
23d1huxa_
not modelled 99.4 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
24c3h1qB_
not modelled 99.4 17 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
25c2e2pA_
not modelled 99.2 18 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
26c3eo3B_
not modelled 99.0 20 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
27d2ewsa1
not modelled 98.9 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
28c2ch5D_
not modelled 98.9 15 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
29d1zc6a1
not modelled 98.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
30c3enoB_
not modelled 98.8 12 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
31c2ivoC_
not modelled 98.8 14 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
32c1z05A_
not modelled 98.8 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
33c2qm1D_
not modelled 98.8 24 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
34c3r8eA_
not modelled 98.7 21 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
35c1e4gT_
not modelled 98.7 15 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
36c1z6rC_
not modelled 98.7 15 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
37c3cqyA_
not modelled 98.5 15 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
38d1z05a3
not modelled 98.4 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
39d2ch5a2
not modelled 98.3 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
40c1zc6A_
not modelled 98.3 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
41d2hoea3
not modelled 98.3 8 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
42c3en9B_
not modelled 98.2 18 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
43c1dkgD_
not modelled 98.0 17 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
44d1z6ra2
not modelled 98.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
45c2ap1A_
not modelled 98.0 16 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
46c1ig8A_
not modelled 97.9 15 PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
47c3d2fC_
not modelled 97.9 14 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
48c2v7zA_
not modelled 97.8 12 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
49c1v4sA_
not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
50d1dkgd2
not modelled 97.8 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
51d1woqa1
not modelled 97.8 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
52c2v7yA_
not modelled 97.8 15 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
53d2ap1a2
not modelled 97.7 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
54c1hpmA_
not modelled 97.7 12 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
55c3htvA_
not modelled 97.7 21 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
56d1jcea2
not modelled 97.6 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
57d1q18a1
not modelled 97.6 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
58d1sz2a1
not modelled 97.6 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
59d1bupa2
not modelled 97.5 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
60c3vgkB_
not modelled 97.5 23 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
61c2gupA_
not modelled 97.5 20 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
62c2hoeA_
not modelled 97.5 8 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
63d2e8aa2
not modelled 97.5 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
64d1e4ft1
not modelled 97.5 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
65c3iucC_
not modelled 97.5 15 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
66c1jcgA_
not modelled 97.4 16 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
67c1sazA_
not modelled 97.4 11 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
68c2khoA_
not modelled 97.4 19 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
69c1qhaA_
not modelled 97.4 13 PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
70d2aa4a1
not modelled 97.3 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
71c1bdgA_
not modelled 97.3 13 PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
72c2aa4B_
not modelled 97.3 14 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
73c3mcpA_
not modelled 97.2 12 PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution
74c1xc3A_
not modelled 97.1 17 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
75d2gupa1
not modelled 97.0 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
76c1woqB_
not modelled 97.0 14 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
77c3p4iA_
not modelled 96.9 16 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
78c3tsuA_
not modelled 96.9 13 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
79d1xc3a1
not modelled 96.8 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
80c3qbwA_
not modelled 96.8 16 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate
81d1e4ft2
not modelled 96.6 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
82c3khyA_
not modelled 96.4 17 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4
83c1tuuA_
not modelled 96.4 18 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
84c2q2rA_
not modelled 96.4 7 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
85c3lm2B_
not modelled 96.4 15 PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
86c2ychA_
not modelled 96.4 17 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
87d1bg3a3
not modelled 96.3 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
88d1bdga1
not modelled 96.1 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
89c2d0oA_
not modelled 96.0 17 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
90d1ig8a1
not modelled 95.9 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
91d1v4sa1
not modelled 95.8 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
92c1zbsA_
not modelled 95.7 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg1100;
PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18
93d3bzka5
not modelled 95.7 22 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
94c3t69A_
not modelled 95.5 23 PDB header:transferase
Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase;
PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti
95d1bg3a1
not modelled 95.5 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
96c3hm8D_
not modelled 95.2 11 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
97d1czan3
not modelled 95.2 10 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
98d1czan1
not modelled 94.9 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
99d2i7na2
not modelled 94.9 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
100d1ig8a2
not modelled 94.3 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
101d2zgya2
not modelled 94.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
102d1g99a1
not modelled 93.7 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
103d1saza2
not modelled 93.6 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
104d1u6za2
not modelled 93.6 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
105c1t6dB_
not modelled 93.3 12 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
106d2ch5a1
not modelled 93.2 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
107d2i7pa1
not modelled 93.1 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
108c1mwmA_
not modelled 92.7 17 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
109d2d0oa2
not modelled 92.5 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
110d2e1za1
not modelled 92.5 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
111c2oceA_
not modelled 92.5 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
112c3dwlB_
not modelled 92.0 9 PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 3;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
113d1t6ca1
not modelled 91.9 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
114d2e8aa1
not modelled 91.9 32 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
115c2h3gX_
not modelled 91.7 21 PDB header:biosynthetic protein
Chain: X: PDB Molecule:biosynthetic protein;
PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis
116c1zxoB_
not modelled 91.5 13 PDB header:unknown function
Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1;
PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.
117c3aapA_
not modelled 91.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i;
PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila
118c3mdqA_
not modelled 90.7 10 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
119d1bdga2
not modelled 90.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
120d3bexa1
not modelled 90.5 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0