Email l.a.kelley@imperial.ac.uk Description Q47155 Date Thu Jan 5 12:36:31 GMT 2012 Unique Job ID 86ad007dd52c01c0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gqcB_ 100.0 32 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 2 c2oh2B_ 100.0 38 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 3 c1jihA_ 100.0 20 PDB header:translation Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: yeast dna polymerase eta 4 c2r8kB_ 100.0 20 PDB header:replication, transferase/dna Chain: B: PDB Molecule:dna polymerase eta; PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna 5 c1t94B_ 100.0 38 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 6 c1s97D_ 100.0 29 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 7 c3mr2A_ 100.0 31 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 8 c2aq4A_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp. 9 c2fllA_ 100.0 29 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 10 c1t3nB_ 100.0 29 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 11 c1k1qA_ 100.0 31 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 12 d1jx4a2 100.0 33 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 13 d1t94a2 100.0 46 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 14 d1jiha2 100.0 24 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 15 d1k1sa2 100.0 37 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 16 d1zeta2 100.0 36 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 17 d1im4a_ 100.0 40 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 18 d1unnc_ 99.8 98 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 19 d1zeta1 99.1 12 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 20 d1t94a1 99.1 25 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 21 d1jiha1 not modelled 99.0 14 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 22 d1jx4a1 not modelled 98.1 18 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 23 d1k1sa1 not modelled 97.4 13 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 24 d1szpa1 not modelled 96.9 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 25 d1pzna1 not modelled 96.8 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 26 d2i1qa1 not modelled 96.4 24 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 27 c1b22A_ not modelled 96.0 19 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 28 d1b22a_ not modelled 96.0 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 29 d1gm5a2 not modelled 95.7 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 30 d2p6ra2 not modelled 95.2 24 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 31 c3bqsB_ not modelled 95.2 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 32 d1lb2b_ not modelled 94.8 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 33 d1doqa_ not modelled 94.5 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 34 c1t4gA_ not modelled 94.5 22 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 35 d1z3eb1 not modelled 94.2 13 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 36 d2aq0a1 not modelled 94.0 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 37 d2q0zx1 not modelled 94.0 8 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Sec63 N-terminal domain 38 c2va8A_ not modelled 93.4 28 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 39 d1cooa_ not modelled 93.4 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 40 c1kdhA_ not modelled 93.3 25 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 41 d1szpb1 not modelled 92.9 29 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 42 c1gm5A_ not modelled 92.9 27 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 43 c2kz3A_ not modelled 92.9 20 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 44 c2ihmA_ not modelled 92.5 29 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 45 d2a1ja1 not modelled 92.5 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 46 d1kfta_ not modelled 92.4 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 47 c1kftA_ not modelled 92.4 14 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 48 c3im2A_ not modelled 92.4 14 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2; PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form 49 d1jmsa3 not modelled 92.3 36 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 50 d2vana1 not modelled 92.1 36 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 51 d2fmpa2 not modelled 92.1 32 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 52 d2bcqa2 not modelled 91.9 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 53 c2bcuA_ not modelled 91.8 21 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 54 c1nomA_ not modelled 91.6 36 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 55 c8iczA_ not modelled 90.9 31 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 56 c2w9mB_ not modelled 90.3 18 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 57 d1qw2a_ not modelled 89.2 16 Fold:Hypothetical protein Ta1206 Superfamily:Hypothetical protein Ta1206 Family:Hypothetical protein Ta1206 58 c2dflA_ not modelled 88.5 18 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament 59 c3ezuA_ not modelled 88.1 25 PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution 60 d2bgwa1 not modelled 87.8 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 61 d1x2ia1 not modelled 87.7 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 62 c2p6uA_ not modelled 87.0 24 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 63 c2nrzB_ not modelled 85.4 19 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 64 c2q0zX_ not modelled 85.3 8 PDB header:protein transport Chain: X: PDB Molecule:protein pro2281; PDBTitle: crystal structure of q9p172/sec63 from homo sapiens.2 northeast structural genomics target hr1979. 65 d1ci4a_ not modelled 85.3 28 Fold:SAM domain-like Superfamily:Barrier-to-autointegration factor, BAF Family:Barrier-to-autointegration factor, BAF 66 c1w25B_ not modelled 84.4 23 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 67 c1wcnA_ not modelled 84.1 26 PDB header:rna-binding protein Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa 68 c3i5aA_ not modelled 84.0 29 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 69 c3ldaA_ not modelled 83.9 23 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant 70 d2a1jb1 not modelled 82.5 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 71 d1dgsa1 not modelled 78.6 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 72 c1szpC_ not modelled 77.5 29 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 73 d1bvsa2 not modelled 77.4 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 74 c2h5xA_ not modelled 74.5 31 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 75 c1ixrA_ not modelled 72.9 23 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 76 c1d8lA_ not modelled 71.9 33 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 77 c3breA_ not modelled 68.2 28 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 78 c1dgsB_ not modelled 65.4 28 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 79 c1wwuA_ not modelled 62.7 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 80 d2axtu1 not modelled 57.3 13 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 81 c1vddC_ not modelled 57.1 44 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 82 c2owoA_ not modelled 56.2 19 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 83 c1s5lu_ not modelled 56.1 13 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 84 c1hjpA_ not modelled 55.6 33 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 85 d1vdda_ not modelled 54.1 44 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 86 d2edua1 not modelled 52.1 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 87 d1ixra1 not modelled 49.8 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 88 d1d8ba_ not modelled 49.2 22 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 89 c1v9pB_ not modelled 45.5 25 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 90 c3f10A_ not modelled 45.2 15 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 91 c2csdB_ not modelled 43.8 32 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 92 d2bcqa1 not modelled 38.3 39 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 93 d2fmpa1 not modelled 38.2 39 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 94 d3bzka1 not modelled 36.3 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 95 d1cuka2 not modelled 33.7 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 96 d1jmsa1 not modelled 32.1 22 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 97 d1nzpa_ not modelled 31.6 39 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 98 c1ko9A_ not modelled 30.8 19 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 99 c2e8mA_ not modelled 29.2 19 PDB header:signaling protein Chain: A: PDB Molecule:epidermal growth factor receptor kinase PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8 100 d2phna1 not modelled 27.6 9 Fold:CofE-like Superfamily:CofE-like Family:CofE-like 101 c2bhnD_ not modelled 26.5 16 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 102 c1yqmA_ not modelled 26.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 103 d1ykga1 not modelled 25.8 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 104 c1hl8B_ not modelled 25.8 10 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 105 d1dk2a_ not modelled 24.1 39 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 106 c3lw9B_ not modelled 23.7 12 PDB header:protein transport Chain: B: PDB Molecule:invasion protein inva; PDBTitle: structure of a cytoplasmic domain of salmonella inva 107 d1rqpa1 not modelled 23.4 14 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 108 c2dzaA_ not modelled 22.5 8 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 109 d1y88a1 not modelled 21.7 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain 110 c2kp7A_ not modelled 21.6 12 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a