Email l.a.kelley@imperial.ac.uk Description P0ABI4 Date Thu Jan 5 11:15:33 GMT 2012 Unique Job ID 84d26ae60415d8b0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbjB_ 100.0 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 2 d2iuba1 100.0 13 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 3 c3nwiC_ 100.0 13 PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system 4 c2hn1A_ 100.0 15 PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ 5 c3ck6E_ 100.0 13 PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 6 d2bbha1 100.0 13 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 7 d2iuba2 99.5 26 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 8 d3cx5d2 55.8 13 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 9 d1ppjd2 54.8 22 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 10 c3j01A_ 28.4 8 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 11 c1oy8A_ 28.4 14 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 12 c3rfuC_ 27.2 8 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 13 c1zrtD_ 26.7 23 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 14 c3dl8H_ 25.6 8 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 15 c1qcrD_ 23.3 22 PDB header: PDB COMPND: 16 c3mkuA_ 21.3 16 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 17 c3r1fO_ 19.7 9 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 18 c2akiY_ 19.6 8 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 19 d1xuba1 19.3 14 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 20 c1p84D_ 18.9 13 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 d1lnga_ not modelled 18.4 10 Fold:SRP19 Superfamily:SRP19 Family:SRP19 22 c3cwbQ_ not modelled 17.2 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 23 c2yiuE_ not modelled 16.9 13 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 24 d1e3oc1 not modelled 16.5 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 25 d1o4xa1 not modelled 15.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 26 c3ktwA_ not modelled 15.3 13 PDB header:rna/rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: crystal structure of the srp19/s-domain srp rna complex of sulfolobus2 solfataricus 27 c2fynH_ not modelled 14.8 9 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 28 d1mh3a1 not modelled 14.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 c1s1iJ_ not modelled 14.6 38 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 30 d1x2na1 not modelled 14.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 31 c2ks1B_ not modelled 14.5 25 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 32 d1au7a1 not modelled 14.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 33 c2da1A_ not modelled 13.6 10 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 34 d1jida_ not modelled 13.5 18 Fold:SRP19 Superfamily:SRP19 Family:SRP19 35 d2r5yb1 not modelled 13.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 c2fz0A_ not modelled 12.9 14 PDB header:membrane protein Chain: A: PDB Molecule:v-snare component of the vacuolar snare complex PDBTitle: identification of yeast r-snare nyv1p as a novel longin2 domain protein 37 d9anta_ not modelled 12.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 38 d1hx1b_ not modelled 12.8 14 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 39 d1du0a_ not modelled 12.6 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1k61a_ not modelled 12.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 d1wh5a_ not modelled 12.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 d1dzfa2 not modelled 11.8 13 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 43 d1uhsa_ not modelled 11.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1fjlb_ not modelled 11.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 d1z3ea1 not modelled 11.5 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 46 d1ig7a_ not modelled 11.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 47 c3nauA_ not modelled 11.4 29 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 48 d1le8a_ not modelled 11.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d1gjja2 not modelled 11.3 19 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 50 c4a1cD_ not modelled 11.2 43 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 51 c2vi6F_ not modelled 11.2 14 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 52 d2p81a1 not modelled 11.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 53 d1du6a_ not modelled 11.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 54 c2oszA_ not modelled 11.0 9 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 55 d1s7ea1 not modelled 10.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 56 d2craa1 not modelled 10.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 57 c3a03A_ not modelled 10.9 19 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 58 d2cuea1 not modelled 10.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 c3ednB_ not modelled 10.7 16 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family 60 c3ci9B_ not modelled 10.7 27 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 61 c2pmzV_ not modelled 10.7 26 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 62 d1eika_ not modelled 10.6 23 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 63 d1hdpa_ not modelled 10.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 d2hddb_ not modelled 10.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 d1iwga8 not modelled 10.1 7 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 66 c2dn0A_ not modelled 10.0 17 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3 67 d1f43a_ not modelled 9.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 68 c2da2A_ not modelled 9.9 24 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 69 c3l09B_ not modelled 9.6 18 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 70 d1bw5a_ not modelled 9.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 d1qusa_ not modelled 9.3 27 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 72 d1b72a_ not modelled 9.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 73 d1p7jb_ not modelled 9.1 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d1jgga_ not modelled 9.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 d1p7ia_ not modelled 9.0 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 76 c2e19A_ not modelled 8.9 13 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 77 d1x2ma1 not modelled 8.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 c3narA_ not modelled 8.6 19 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1; PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4) 79 c2da4A_ not modelled 8.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 80 d1hmja_ not modelled 8.5 6 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 81 d1ftta_ not modelled 8.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 82 c3l78A_ not modelled 8.4 13 PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 83 d2cqxa1 not modelled 8.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 84 d1sana_ not modelled 8.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 c3dluA_ not modelled 8.2 25 PDB header:rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 86 d1akha_ not modelled 8.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 d1fjla_ not modelled 8.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 88 c2yvxD_ not modelled 8.1 8 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 89 c2w9pC_ not modelled 8.1 6 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:multicystatin; PDBTitle: crystal structure of potato multicystatin 90 d1wi3a_ not modelled 8.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 91 d1jeia_ not modelled 8.0 10 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 92 d2e1oa1 not modelled 8.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 93 c1s7eA_ not modelled 7.8 24 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 6; PDBTitle: solution structure of hnf-6 94 d1gt0c1 not modelled 7.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c3ixzA_ not modelled 7.8 13 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 96 d1octc1 not modelled 7.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 d1b8ia_ not modelled 7.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 c2dmuA_ not modelled 7.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 99 d1yrnb_ not modelled 7.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain