Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	T	Q	Y	G	F	F	I	D	S	S	R	C	T	G	C	K	T	C	E	L	A	C	K	D	Y	K	D	L	T	P	E	V	S	F	R	R	I	Y	E	Y	A	G	G	D	W	Q	E	D	N	G	V	W	H	Q	N	V	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	Y	L	S	I	S	C	N	H	C	E	D	P	A	C	T	K	V	C	P	S	G	A	M	H	K	R	E	D	G	F	V	V	V	D	E	D	V	C	I	G	C	R	Y	C	H	M	A	C	P	Y	G	A	P	Q	Y	N	E	T	K
Secondary structure
SS confidence
Disorder																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	H	M	T	K	C	D	G	C	Y	D	R	V	A	E	G	K	K	P	I	C	V	E	S	C	P	L	R	A	L	D	F	G	P	I	D	E	L	R	K	K	H	G	D	L	A	A	V	A	P	L	P	R	A	H	F	T	K	P	N
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence		I	V	I	K	P	N	A	N	S	R	P	T	G	D	T	T	G	Y	L	A	N	P	K	E	V
Secondary structure
SS confidence
Disorder												?	?	?	?			?		?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ivf chain B Region: 2 - 194 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 1 - 204 Aligned: 191 Modelled: 204 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 1kqf chain B domain 1 Region: 2 - 205 Aligned: 201 Modelled: 204 Confidence: 100.0% Identity: 30% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2vpy chain B Region: 1 - 190 Aligned: 180 Modelled: 190 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1kqf chain B Region: 1 - 205 Aligned: 202 Modelled: 205 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1y5i chain B domain 1 Region: 2 - 203 Aligned: 202 Modelled: 202 Confidence: 100.0% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h0h chain B Region: 2 - 195 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1vlf chain N domain 2 Region: 1 - 202 Aligned: 189 Modelled: 202 Confidence: 100.0% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1xer chain A Region: 84 - 154 Aligned: 62 Modelled: 71 Confidence: 99.3% Identity: 37% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 2zvs chain B Region: 93 - 172 Aligned: 79 Modelled: 80 Confidence: 99.3% Identity: 18% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 1gth chain D Region: 2 - 120 Aligned: 67 Modelled: 67 Confidence: 99.3% Identity: 28% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 2fug chain G Region: 84 - 154 Aligned: 62 Modelled: 71 Confidence: 99.3% Identity: 35% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 9 domain 1 Region: 84 - 154 Aligned: 62 Modelled: 71 Confidence: 99.3% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1hfe chain L domain 2 Region: 80 - 153 Aligned: 65 Modelled: 74 Confidence: 99.3% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1jnr chain B Region: 60 - 152 Aligned: 93 Modelled: 93 Confidence: 99.3% Identity: 20% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2v2k chain B Region: 61 - 165 Aligned: 98 Modelled: 105 Confidence: 99.2% Identity: 21% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 7fd1 chain A Region: 61 - 119 Aligned: 58 Modelled: 59 Confidence: 99.2% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 3gyx chain J Region: 92 - 158 Aligned: 58 Modelled: 67 Confidence: 99.2% Identity: 28% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 3c8y chain A domain 3 Region: 2 - 116 Aligned: 73 Modelled: 73 Confidence: 99.2% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2c42 chain A domain 5 Region: 8 - 118 Aligned: 82 Modelled: 82 Confidence: 99.2% Identity: 18% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 1 c2ivfB_ 2 c1ti2F_ 3 d1kqfb1 4 c2vpyB_ 5 c1kqfB_ 6 d1y5ib1 7 d1h0hb_ 8 d1vlfn2 9 d1xera_ 10 c2zvsB_ 11 c1gthD_ 12 c2fugG_ 13 d2fug91 14 d1hfel2 15 d1jnrb_ 16 c2v2kB_ 17 d7fd1a_ 18 c3gyxJ_ 19 d3c8ya3 20 d2c42a5 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ivfB_ 100.0 41 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 2 c1ti2F_ 100.0 25 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 3 d1kqfb1 100.0 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 4 c2vpyB_ 100.0 34 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 5 c1kqfB_ 100.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 6 d1y5ib1 100.0 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 d1h0hb_ 100.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1vlfn2 100.0 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 d1xera_ 99.3 37 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 10 c2zvsB_ 99.3 18 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 11 c1gthD_ 99.3 28 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 12 c2fugG_ 99.3 35 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 13 d2fug91 99.3 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 14 d1hfel2 99.3 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 15 d1jnrb_ 99.3 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 16 c2v2kB_ 99.2 21 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 17 d7fd1a_ 99.2 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 18 c3gyxJ_ 99.2 28 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 19 d3c8ya3 99.2 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 d2c42a5 99.2 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 21 c2fgoA_ not modelled 99.2 25 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 22 d1h98a_ not modelled 99.2 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 23 d1bc6a_ not modelled 99.1 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 24 d1blua_ not modelled 99.1 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 25 d1jb0c_ not modelled 99.1 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 26 c1hfeL_ not modelled 99.1 33 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 27 d1gtea5 not modelled 99.1 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 28 d1rgva_ not modelled 99.1 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 d3c7bb1 not modelled 99.1 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 30 c2gmhA_ not modelled 99.1 22 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 31 c1gx7A_ not modelled 99.1 38 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 32 d2fdna_ not modelled 99.0 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 33 c2c3yA_ not modelled 99.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 34 d1iqza_ not modelled 99.0 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 35 d1fcaa_ not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 36 d2fug34 not modelled 98.9 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 37 d1dura_ not modelled 98.9 37 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 38 d2gmha3 not modelled 98.9 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 39 d1clfa_ not modelled 98.9 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 40 d1vjwa_ not modelled 98.8 36 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 41 c1c4cA_ not modelled 98.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 42 d1sj1a_ not modelled 98.7 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 43 d1fxra_ not modelled 98.7 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 44 c1dwlA_ not modelled 98.7 25 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 45 c3c7bE_ not modelled 98.6 30 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 46 c3bk7A_ not modelled 98.3 32 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 47 c2fugC_ not modelled 98.3 26 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 48 c2v4jE_ not modelled 98.2 26 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 c2v4jA_ not modelled 98.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 50 c3c7bA_ not modelled 97.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 51 d1kf6b1 not modelled 97.9 19 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d2bs2b1 not modelled 97.9 18 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 d1nekb1 not modelled 97.5 14 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 54 c2bs2E_ not modelled 97.5 18 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 55 c1nekB_ not modelled 97.4 14 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 56 c2h89B_ not modelled 97.2 15 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 57 d2v4jb1 not modelled 97.1 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 58 c2b76N_ not modelled 97.0 19 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 59 c3cf4A_ not modelled 95.8 38 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 60 d2v4ja1 not modelled 85.4 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d3c7ba1 not modelled 84.3 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 c2vdcI_ not modelled 80.4 25 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 63 d1fxda_ not modelled 59.1 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 64 d1gtea1 not modelled 43.8 41 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 65 d1yuza2 not modelled 19.0 24 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 66 d1djqa3 not modelled 18.9 33 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 67 c2a91A_ not modelled 17.1 25 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 68 d1nnqa2 not modelled 17.0 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 69 d2r4qa1 not modelled 14.6 32 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 70 c2kn0A_ not modelled 11.7 36 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14 71 c2eqpA_ not modelled 11.6 36 PDB header:transcription Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor 72 c1moxB_ not modelled 11.4 25 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 73 d2cs3a1 not modelled 10.0 27 Fold:RING/U-box Superfamily:RING/U-box Family:Variant RING domain 74 c1deqD_ not modelled 9.8 24 PDB header: PDB COMPND: 75 c2dtgE_ not modelled 9.3 25 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 76 d1exta3 not modelled 8.9 40 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 77 c2a45J_ not modelled 8.9 25 PDB header:hydrolase/hydrolase inhibitor Chain: J: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 78 d1ncfb3 not modelled 8.3 42 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 79 c4a1eT_ not modelled 8.1 27 PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 80 c3iz5Z_ not modelled 7.9 14 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 81 c1g8jC_ not modelled 7.7 12 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 82 d1lkoa2 not modelled 7.6 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 83 c1s1iS_ not modelled 7.1 8 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l24-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 84 c2zkru_ not modelled 7.0 15 PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 85 c3izcZ_ not modelled 7.0 7 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 86 d2r48a1 not modelled 6.8 33 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 87 d1rutx1 not modelled 6.7 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 88 c1m1jA_ not modelled 6.5 21 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0