Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	L	A	S	L	R	A	Q	Q	I	E	L	A	S	S	V	I	R	E	D	R	L	D	K	D	P	P	D	L	I	A	G	A	D	V	G	F	E	Q	G	G	E	V	T	R	A	A	M	V	L	L	K	Y	P	S	L	E	L	V
Secondary structure
SS confidence
Disorder		?	?															?		?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Y	K	V	A	R	I	A	T	T	M	P	Y	I	P	G	F	L	S	F	R	E	Y	P	A	L	L	A	A	W	E	M	L	S	Q	K	P	D	L	V	F	V	D	G	H	G	I	S	H	P	R	R	L	G	V	A	S	H	F	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	V	D	V	P	T	I	G	V	A	K	K	R	L	C	G	K	F	E	P	L	S	S	E	P	G	A	L	A	P	L	M	D	K	G	E	Q	L	A	W	V	W	R	S	K	A	R	C	N	P	L	F	I	A	T	G	H	R	V
Secondary structure
SS confidence
Disorder																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence		S	V	D	S	A	L	A	W	V	Q	R	C	M	K	G	Y	R	L	P	E	P	T	R	W	A	D	A	V	A	S	E	R	P	A	F	V	R	Y	T	A	N	Q	P
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3goc chain B Region: 1 - 216 Aligned: 216 Modelled: 216 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 Phyre2 PDB 3ga2 chain A Region: 1 - 219 Aligned: 219 Modelled: 219 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 Phyre2 PDB 2w36 chain B Region: 1 - 214 Aligned: 211 Modelled: 214 Confidence: 100.0% Identity: 38% PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair Phyre2 PDB 2qh9 chain B Region: 30 - 210 Aligned: 164 Modelled: 181 Confidence: 98.5% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 Phyre2 PDB 2nrz chain B Region: 11 - 133 Aligned: 110 Modelled: 121 Confidence: 97.9% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation Phyre2 PDB 3c65 chain A Region: 11 - 148 Aligned: 129 Modelled: 136 Confidence: 97.7% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain Phyre2 PDB 2nrr chain A Region: 11 - 132 Aligned: 98 Modelled: 120 Confidence: 96.2% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc Phyre2 PDB 1u04 chain A Region: 25 - 221 Aligned: 197 Modelled: 197 Confidence: 94.4% Identity: 14% PDB header:hydrolase/gene regulation Chain: A: PDB Molecule:hypothetical protein pf0537; PDBTitle: crystal structure of full length argonaute from pyrococcus furiosus Phyre2 PDB 2f8s chain A Region: 24 - 210 Aligned: 183 Modelled: 187 Confidence: 93.2% Identity: 16% PDB header:rna binding protein/rna Chain: A: PDB Molecule:argonaute protein; PDBTitle: crystal structure of aa-ago with externally-bound sirna Phyre2 PDB 1u04 chain A domain 2 Region: 24 - 221 Aligned: 194 Modelled: 195 Confidence: 85.8% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: PIWI domain Phyre2 PDB 1yvu chain A domain 2 Region: 24 - 210 Aligned: 182 Modelled: 187 Confidence: 85.4% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: PIWI domain Phyre2 PDB 3bzk chain A domain 5 Region: 25 - 109 Aligned: 71 Modelled: 85 Confidence: 81.3% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Tex RuvX-like domain-like Phyre2 PDB 3tai chain B Region: 3 - 104 Aligned: 102 Modelled: 99 Confidence: 71.3% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:dna double-strand break repair protein nura; PDBTitle: crystal structure of nura Phyre2 PDB 2zkq chain B Region: 73 - 130 Aligned: 44 Modelled: 58 Confidence: 60.7% Identity: 27% PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 3bch chain A Region: 73 - 130 Aligned: 45 Modelled: 58 Confidence: 58.8% Identity: 24% PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor Phyre2 PDB 1efv chain A domain 2 Region: 95 - 177 Aligned: 66 Modelled: 67 Confidence: 56.4% Identity: 20% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: C-terminal domain of the electron transfer flavoprotein alpha subunit Phyre2 PDB 2oce chain A Region: 4 - 108 Aligned: 87 Modelled: 105 Confidence: 54.7% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa Phyre2 PDB 1efp chain C Region: 95 - 177 Aligned: 66 Modelled: 67 Confidence: 49.6% Identity: 17% PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans Phyre2 PDB 3bbn chain B Region: 78 - 130 Aligned: 48 Modelled: 53 Confidence: 47.0% Identity: 23% PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2obn chain A Region: 83 - 199 Aligned: 99 Modelled: 117 Confidence: 46.2% Identity: 14% PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution Phyre2 1 c3gocB_ 2 c3ga2A_ 3 c2w36B_ 4 c2qh9B_ 5 c2nrzB_ 6 c3c65A_ 7 c2nrrA_ 8 c1u04A_ 9 c2f8sA_ 10 d1u04a2 11 d1yvua2 12 d3bzka5 13 c3taiB_ 14 c2zkqb_ 15 c3bchA_ 16 d1efva2 17 c2oceA_ 18 c1efpC_ 19 c3bbnB_ 20 c2obnA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gocB_ 100.0 35 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 2 c3ga2A_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 3 c2w36B_ 100.0 38 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 4 c2qh9B_ 98.5 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 5 c2nrzB_ 97.9 26 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 6 c3c65A_ 97.7 19 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 7 c2nrrA_ 96.2 27 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 8 c1u04A_ 94.4 14 PDB header:hydrolase/gene regulation Chain: A: PDB Molecule:hypothetical protein pf0537; PDBTitle: crystal structure of full length argonaute from pyrococcus furiosus 9 c2f8sA_ 93.2 16 PDB header:rna binding protein/rna Chain: A: PDB Molecule:argonaute protein; PDBTitle: crystal structure of aa-ago with externally-bound sirna 10 d1u04a2 85.8 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 11 d1yvua2 85.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 12 d3bzka5 81.3 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 13 c3taiB_ 71.3 14 PDB header:hydrolase Chain: B: PDB Molecule:dna double-strand break repair protein nura; PDBTitle: crystal structure of nura 14 c2zkqb_ 60.7 27 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 15 c3bchA_ 58.8 24 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 16 d1efva2 56.4 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 17 c2oceA_ 54.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 18 c1efpC_ 49.6 17 PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans 19 c3bbnB_ 47.0 23 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 20 c2obnA_ 46.2 14 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 21 d1efpa2 not modelled 45.5 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 22 d1vi6a_ not modelled 44.6 29 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 23 c3rggD_ not modelled 41.6 11 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 24 c3cvoA_ not modelled 36.8 31 PDB header:transferase Chain: A: PDB Molecule:methyltransferase-like protein of unknown function; PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution 25 d1kcfa2 not modelled 35.7 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Mitochondrial resolvase ydc2 catalytic domain 26 c3izbA_ not modelled 35.3 29 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 27 c2qmoA_ not modelled 32.8 22 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori 28 c2etjA_ not modelled 31.8 57 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hii; PDBTitle: crystal structure of ribonuclease hii (ec 3.1.26.4) (rnase hii)2 (tm0915) from thermotoga maritima at 1.74 a resolution 29 d2etja1 not modelled 31.8 57 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 30 c1jb0M_ not modelled 31.2 50 PDB header:photosynthesis Chain: M: PDB Molecule:photosystem 1 reaction centre subunit xii; PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria 31 d1jb0m_ not modelled 31.2 50 Fold:Single transmembrane helix Superfamily:Subunit XII of photosystem I reaction centre, PsaM Family:Subunit XII of photosystem I reaction centre, PsaM 32 c3c6aA_ not modelled 29.2 16 PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the rb49 gp17 nuclease domain 33 d2uubb1 not modelled 29.0 23 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 34 d3clsd2 not modelled 28.7 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:C-terminal domain of the electron transfer flavoprotein alpha subunit 35 c1xuzA_ not modelled 28.5 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 36 c2f1rA_ not modelled 26.3 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 37 d2gy9b1 not modelled 25.2 16 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 38 c1s1hB_ not modelled 24.4 30 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 39 d2zdra2 not modelled 21.7 27 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 40 c3iz6A_ not modelled 19.8 26 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 41 d2foka4 not modelled 19.8 33 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease FokI, C-terminal (catalytic) domain 42 d1io2a_ not modelled 19.7 28 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 43 c2xznB_ not modelled 16.6 26 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 44 d2g0ta1 not modelled 14.6 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 45 c1fokA_ not modelled 13.4 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (foki restriction endonucleas); PDBTitle: structure of restriction endonuclease foki bound to dna 46 c3jvpA_ not modelled 13.2 18 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 47 d1qcza_ not modelled 12.7 19 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 48 c2ivoC_ not modelled 12.5 16 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 49 c1glbG_ not modelled 12.3 17 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 50 d2p3ra1 not modelled 12.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 51 c3kgkA_ not modelled 11.7 31 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 52 d1o66a_ not modelled 11.6 35 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 53 c2ygkA_ not modelled 11.2 16 PDB header:hydrolase Chain: A: PDB Molecule:nura; PDBTitle: crystal structure of the nura nuclease from sulfolobus solfataricus 54 c3ktbD_ not modelled 10.6 15 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 55 d1k38a_ not modelled 10.0 10 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase 56 d1g6sa_ not modelled 8.8 11 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 57 d2d0oa2 not modelled 8.6 35 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ATPase domain of dehydratase reactivase alpha subunit 58 d1k1sa1 not modelled 8.6 21 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 59 d2ayia1 not modelled 8.4 11 Fold:Thermophilic metalloprotease-like Superfamily:Thermophilic metalloprotease-like Family:Thermophilic metalloprotease (M29) 60 d1w9ha1 not modelled 8.4 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain 61 c3ezkB_ not modelled 8.0 11 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 62 c3oirA_ not modelled 7.9 12 PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes 63 c2dcqA_ not modelled 7.7 19 PDB header:unknown function Chain: A: PDB Molecule:putative protein at4g01050; PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana 64 d1o4va_ not modelled 7.7 15 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 65 d1pswa_ not modelled 7.7 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 66 d1nija1 not modelled 7.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 67 d1gzga_ not modelled 7.6 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 68 d2b7ta1 not modelled 7.6 9 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 69 c1zu4A_ not modelled 7.4 19 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 70 c2wcvI_ not modelled 7.4 27 PDB header:isomerase Chain: I: PDB Molecule:l-fucose mutarotase; PDBTitle: crystal structure of bacterial fucu 71 c3orsD_ not modelled 7.3 17 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 72 c3cf4G_ not modelled 7.3 21 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 73 c3fmfA_ not modelled 7.1 13 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate 74 c2iuwA_ not modelled 7.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3; PDBTitle: crystal structure of human abh3 in complex with iron ion2 and 2-oxoglutarate 75 c3trhI_ not modelled 7.0 29 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 76 c3gbtA_ not modelled 6.9 18 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 77 c1u8xX_ not modelled 6.8 15 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 78 c2a6aB_ not modelled 6.7 22 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 79 c2odaB_ not modelled 6.5 32 PDB header:protein binding Chain: B: PDB Molecule:hypothetical protein pspto_2114; PDBTitle: crystal structure of pspto_2114 80 d1xo1a2 not modelled 6.5 31 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 81 c3ezfA_ not modelled 6.2 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:para; PDBTitle: partition protein 82 d2iuwa1 not modelled 6.1 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:AlkB-like 83 c3n53B_ not modelled 6.0 39 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 84 d1rf6a_ not modelled 6.0 17 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 85 c3iabB_ not modelled 5.9 30 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop7; PDBTitle: crystal structure of rnase p /rnase mrp proteins pop6, pop72 in a complex with the p3 domain of rnase mrp rna 86 d1xmpa_ not modelled 5.9 17 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 87 d1jx4a1 not modelled 5.9 14 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 88 d1oy0a_ not modelled 5.9 22 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 89 c3odhB_ not modelled 5.7 22 PDB header:hydrolase/dna Chain: B: PDB Molecule:okrai endonuclease; PDBTitle: structure of okrai/dna complex 90 c2d0bA_ not modelled 5.7 10 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hiii; PDBTitle: crystal structure of bst-rnase hiii in complex with mg2+ 91 d1osna_ not modelled 5.6 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 92 c1qeyA_ not modelled 5.5 28 PDB header:gene regulation Chain: A: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 93 c1qeyD_ not modelled 5.5 28 PDB header:gene regulation Chain: D: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 94 c1qeyB_ not modelled 5.5 28 PDB header:gene regulation Chain: B: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 95 c1qeyC_ not modelled 5.5 28 PDB header:gene regulation Chain: C: PDB Molecule:protein (regulatory protein mnt); PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange 96 d1bdoa_ not modelled 5.4 23 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 97 c3g25B_ not modelled 5.4 18 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 98 d1u11a_ not modelled 5.3 15 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 99 c2fw9A_ not modelled 5.3 17 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0