Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16918
DateWed Jan 25 15:20:40 GMT 2012
Unique Job ID7f4c835c4cb93054

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2oy7A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
Confidence and coverage
Confidence: 96.0% Coverage: 19%
269 residues ( 19% of your sequence) have been modelled with 96.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
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   .........70.........80.........90.........100.........110.........120
Sequence  ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
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   .........130.........140.........150.........160.........170.........180
Sequence  LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
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   .........190.........200.........210.........220.........230.........240
Sequence  GPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDG
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   .........250.........260.........270.........280.........290.........300
Sequence  AGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
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   .........310.........320.........330.........340.........350.........360
Sequence  EYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVRSFTYDDKYRGRMVAHRHTGRPEICYR
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   .........370.........380.........390.........400.........410.........420
Sequence  YDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLNRREVLHTQGEGGLKRVVKKEHADGSV
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   .........430.........440.........450.........460.........470.........480
Sequence  TQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLTSATGP
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   .........490.........500.........510.........520.........530.........540
Sequence  DGLEIRREYDEWGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
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   .........550.........560.........570.........580.........590.........600
Sequence  SFTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNAAG
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   .........610.........620.........630.........640.........650.........660
Sequence  DLTTVIAPDGSRNGTQYDAWGKAICTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
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   .........670.........680.........690.........700.........710.........720
Sequence  LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVNGETAERWQY
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   .........730.........740.........750.........760.........770.........780
Sequence  DERGWLTDISHISEGHRVTVHYGYDSKGRLASEHLTVHHPQTNELLWQHETRHAYNAQGL
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   .........790.........800.........810.........820.........830.........840
Sequence  ANRCIPDSLPAVEWLTYGSGWLSGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPA
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   .........850.........860.........870.........880.........890.........900
Sequence  GQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIP
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   .........910.........920.........930.........940.........950.........960
Sequence  YTTDPAGNRLPDPELHPDSALSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTD
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  DERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  KPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQ
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPA
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  RKIHLYHCDHRGLPLALISTEGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEES
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  GLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMG
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  GTGERSGPDIWGNPFYHQYLCVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAG
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  RCDLVETDNSCVENCLKGKFKEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKMKC
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   .........1390.......
Sequence  SGNNIGRFIRFVFTGVM
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2oy7 chain A

3D model

Region: 385 - 662
Aligned: 269
Modelled: 278
Confidence: 96.0%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant

Phyre2

PDB 1n7d chain A

3D model

Region: 470 - 688
Aligned: 219
Modelled: 219
Confidence: 58.3%
Identity: 13%
PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor

Phyre2

PDB 1adt chain A domain 1

3D model

Region: 1326 - 1389
Aligned: 53
Modelled: 60
Confidence: 45.4%
Identity: 34%
Fold: Domain of early E2A DNA-binding protein, ADDBP
Superfamily: Domain of early E2A DNA-binding protein, ADDBP
Family: Domain of early E2A DNA-binding protein, ADDBP

Phyre2

PDB 1x3z chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 32
Modelled: 34
Confidence: 44.1%
Identity: 22%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 3ib5 chain A

3D model

Region: 1243 - 1363
Aligned: 104
Modelled: 118
Confidence: 41.3%
Identity: 18%
PDB header:hormone
Chain: A: PDB Molecule:sex pheromone precursor;
PDBTitle: crystal structure of sex pheromone precursor (yp_536235.1)2 from lactobacillus salivarius subsp. salivarius ucc118 at3 1.35 a resolution

Phyre2

PDB 2ivz chain D

3D model

Region: 385 - 626
Aligned: 238
Modelled: 242
Confidence: 37.7%
Identity: 13%
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain

Phyre2

PDB 3e5z chain A

3D model

Region: 426 - 703
Aligned: 256
Modelled: 262
Confidence: 26.6%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.

Phyre2

PDB 3msw chain A

3D model

Region: 926 - 975
Aligned: 34
Modelled: 34
Confidence: 25.6%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution

Phyre2

PDB 2w8b chain B

3D model

Region: 394 - 626
Aligned: 231
Modelled: 233
Confidence: 25.0%
Identity: 13%
PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal

Phyre2

PDB 3esw chain A

3D model

Region: 1209 - 1242
Aligned: 33
Modelled: 34
Confidence: 24.9%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.

Phyre2

PDB 3rwx chain A

3D model

Region: 62 - 75
Aligned: 14
Modelled: 14
Confidence: 24.6%
Identity: 21%
PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution

Phyre2

PDB 2f4m chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 34
Modelled: 34
Confidence: 24.5%
Identity: 24%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 1j5q chain B

3D model

Region: 1189 - 1246
Aligned: 50
Modelled: 58
Confidence: 22.5%
Identity: 26%
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.

Phyre2

PDB 1osp chain O

3D model

Region: 366 - 558
Aligned: 175
Modelled: 193
Confidence: 22.1%
Identity: 17%
Fold: open-sided beta-meander
Superfamily: Outer surface protein
Family: Outer surface protein

Phyre2

PDB 2x12 chain A

3D model

Region: 1147 - 1172
Aligned: 26
Modelled: 26
Confidence: 21.7%
Identity: 27%
PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae

Phyre2

PDB 3cbb chain A

3D model

Region: 1331 - 1358
Aligned: 17
Modelled: 28
Confidence: 19.7%
Identity: 18%
PDB header:transcription/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 4-alpha, dna binding
PDBTitle: crystal structure of hepatocyte nuclear factor 4alpha in2 complex with dna: diabetes gene product

Phyre2

PDB 3vh0 chain C

3D model

Region: 409 - 689
Aligned: 278
Modelled: 281
Confidence: 19.0%
Identity: 9%
PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna

Phyre2

PDB 1hra chain A

3D model

Region: 1331 - 1358
Aligned: 17
Modelled: 28
Confidence: 17.4%
Identity: 18%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: Nuclear receptor

Phyre2

PDB 2cok chain A

3D model

Region: 1321 - 1351
Aligned: 31
Modelled: 31
Confidence: 16.2%
Identity: 3%
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1

Phyre2

PDB 1gib chain A

3D model

Region: 1376 - 1380
Aligned: 5
Modelled: 5
Confidence: 15.9%
Identity: 100%
PDB header:neurotoxin
Chain: A: PDB Molecule:mu-conotoxin giiib;
PDBTitle: mu-conotoxin giiib, nmr

Phyre2
1

c2oy7A_
2

c1n7dA_
3

d1adta1
4

d1x3za1
5

c3ib5A_
6

c2ivzD_
7

c3e5zA_
8

c3mswA_
9

c2w8bB_
10

c3eswA_
11

c3rwxA_
12

d2f4ma1
13

c1j5qB_
14

d1ospo_
15

c2x12A_
16

c3cbbA_
17

c3vh0C_
18

d1hraa_
19

c2cokA_
20

c1gibA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oy7A_



96.0 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
2c1n7dA_



58.3 13 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
3d1adta1



45.4 34 Fold:Domain of early E2A DNA-binding protein, ADDBP
Superfamily:Domain of early E2A DNA-binding protein, ADDBP
Family:Domain of early E2A DNA-binding protein, ADDBP
4d1x3za1



44.1 22 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
5c3ib5A_



41.3 18 PDB header:hormone
Chain: A: PDB Molecule:sex pheromone precursor;
PDBTitle: crystal structure of sex pheromone precursor (yp_536235.1)2 from lactobacillus salivarius subsp. salivarius ucc118 at3 1.35 a resolution
6c2ivzD_



37.7 13 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
7c3e5zA_



26.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
8c3mswA_



25.6 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
9c2w8bB_



25.0 13 PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal
10c3eswA_



24.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
11c3rwxA_



24.6 21 PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution
12d2f4ma1



24.5 24 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
13c1j5qB_



22.5 26 PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
14d1ospo_



22.1 17 Fold:open-sided beta-meander
Superfamily:Outer surface protein
Family:Outer surface protein
15c2x12A_



21.7 27 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae
16c3cbbA_



19.7 18 PDB header:transcription/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 4-alpha, dna binding
PDBTitle: crystal structure of hepatocyte nuclear factor 4alpha in2 complex with dna: diabetes gene product
17c3vh0C_



19.0 9 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
18d1hraa_



17.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
19c2cokA_



16.2 3 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
20c1gibA_



15.9 100 PDB header:neurotoxin
Chain: A: PDB Molecule:mu-conotoxin giiib;
PDBTitle: mu-conotoxin giiib, nmr
21d1ss3a_



not modelled 15.8 25 Fold:Toxic hairpin
Superfamily:Pollen allergen ole e 6
Family:Pollen allergen ole e 6
22c2vsaA_



not modelled 15.8 21 PDB header:toxin
Chain: A: PDB Molecule:mosquitocidal toxin;
PDBTitle: structure and mode of action of a mosquitocidal holotoxin
23c2z48B_



not modelled 15.4 20 PDB header:toxin
Chain: B: PDB Molecule:hemolytic lectin cel-iii;
PDBTitle: crystal structure of hemolytic lectin cel-iii complexed2 with galnac
24d1bcoa1



not modelled 15.0 17 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
25c3ebqA_



not modelled 14.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold
PDBTitle: crystal structure of human pppde1
26d1ei5a1



not modelled 14.9 32 Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
27c2envA_



not modelled 14.1 18 PDB header:transcription
Chain: A: PDB Molecule:peroxisome proliferator-activated receptor delta;
PDBTitle: solution sturcture of the c4-type zinc finger domain from2 human peroxisome proliferator-activated receptor delta
28c3bl9B_



not modelled 14.1 17 PDB header:hydrolase
Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps;
PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
29d1r0oa_



not modelled 13.8 27 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
30c3u4zB_



not modelled 13.8 32 PDB header:dna binding protein
Chain: B: PDB Molecule:telomerase-associated protein 82;
PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-b
31d1hcqa_



not modelled 13.5 8 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
32c2hwnF_



not modelled 13.5 25 PDB header:transferase
Chain: F: PDB Molecule:a kinase binding peptide;
PDBTitle: crystal structure of rii alpha dimerization/docking domain of pka2 bound to the d-akap2 peptide
33d2fs2a1



not modelled 13.5 15 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
34c1r4iA_



not modelled 13.4 9 PDB header:transcription/dna
Chain: A: PDB Molecule:androgen receptor;
PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element
35d1r4ia_



not modelled 13.4 9 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
36c3bmxB_



not modelled 13.4 42 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis
37d1r4ra_



not modelled 13.3 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
38d1o5ua_



not modelled 13.2 8 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
39c3cjhK_



not modelled 13.2 50 PDB header:protein transport
Chain: K: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: tim8-tim13 complex
40d1lata_



not modelled 13.1 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
41c2eblA_



not modelled 13.1 27 PDB header:transcription
Chain: A: PDB Molecule:coup transcription factor 1;
PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1
42c3jroA_



not modelled 13.1 11 PDB header:transport protein, structural protein
Chain: A: PDB Molecule:fusion protein of protein transport protein sec13
PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
43c3swnA_



not modelled 13.0 13 PDB header:rna binding protein
Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
44d1r0na_



not modelled 13.0 27 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
45d2hanb1



not modelled 13.0 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
46d1pk6c_



not modelled 12.9 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
47d1glua_



not modelled 12.8 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
48c3dzuD_



not modelled 12.8 18 PDB header:transcription/dna
Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide
49c2dg2D_



not modelled 12.8 21 PDB header:protein binding
Chain: D: PDB Molecule:apolipoprotein a-i binding protein;
PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein
50c3swnC_



not modelled 12.8 13 PDB header:rna binding protein
Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
51d1dszb_



not modelled 12.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
52d1dsza_



not modelled 12.5 9 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
53c2bskD_



not modelled 12.5 29 PDB header:protein transport
Chain: D: PDB Molecule:mitochondrial import inner membrane translocase
PDBTitle: crystal structure of the tim9 tim10 hexameric complex
54c2ka3C_



not modelled 12.5 36 PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
55c2w2sA_



not modelled 12.2 46 PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the lagos bat virus matrix protein
56d1brwa3



not modelled 12.1 23 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
57d1lo1a_



not modelled 11.9 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
58d1ynwa1



not modelled 11.8 9 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
59d1bcga_



not modelled 11.7 38 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
60d1kb6b_



not modelled 11.7 9 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
61c1xmlA_



not modelled 11.6 17 PDB header:chaperone
Chain: A: PDB Molecule:heat shock-like protein 1;
PDBTitle: structure of human dcps
62d1pk6b_



not modelled 11.6 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
63c1t3dB_



not modelled 11.5 32 PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
64d1a6ya_



not modelled 11.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
65d2tpta3



not modelled 11.3 23 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
66c2kx7A_



not modelled 11.3 28 PDB header:protein binding
Chain: A: PDB Molecule:sensor-like histidine kinase yojn;
PDBTitle: solution structure of the e.coli rcsd-abl domain (residues 688-795)
67d1pvza_



not modelled 11.2 44 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
68c3nzpA_



not modelled 11.1 22 PDB header:lyase
Chain: A: PDB Molecule:arginine decarboxylase;
PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53
69c3bp1A_



not modelled 11.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase;
PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor
70c3dxrB_



not modelled 11.0 29 PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase
PDBTitle: crystal structure of the yeast inter-membrane space2 chaperone assembly tim9.10
71d2bskb1



not modelled 11.0 29 Fold:Tim10-like
Superfamily:Tim10-like
Family:Tim10/DDP
72d2nllb_



not modelled 11.0 9 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
73d1m3ya2



not modelled 11.0 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Major capsid protein vp54
74c2a66A_



not modelled 10.9 27 PDB header:transcription/dna
Chain: A: PDB Molecule:orphan nuclear receptor nr5a2;
PDBTitle: human liver receptor homologue dna-binding domain (hlrh-12 dbd) in complex with dsdna from the hcyp7a1 promoter
75d2bska1



not modelled 10.9 25 Fold:Tim10-like
Superfamily:Tim10-like
Family:Tim10/DDP
76c2g9tT_



not modelled 10.9 29 PDB header:viral protein
Chain: T: PDB Molecule:
PDBTitle: crystal structure of the sars coronavirus nsp10 at 2.1a
77d1jofa_



not modelled 10.8 13 Fold:7-bladed beta-propeller
Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme
Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
78c3dxrA_



not modelled 10.7 25 PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial import inner membrane translocase
PDBTitle: crystal structure of the yeast inter-membrane space2 chaperone assembly tim9.10
79c2hnbA_



not modelled 10.7 10 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
80d1xata_



not modelled 10.5 26 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
81c1r0nB_



not modelled 10.5 18 PDB header:transcription/dna
Chain: B: PDB Molecule:ecdysone receptor;
PDBTitle: crystal structure of heterodimeric ecdsyone receptor dna2 binding complex
82c1z7eC_



not modelled 10.4 20 PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
83d1c3ha_



not modelled 10.3 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
84d2hana1



not modelled 10.3 20 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
85d1jnpa_



not modelled 10.2 26 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
86c3cjhJ_



not modelled 10.2 38 PDB header:protein transport
Chain: J: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: tim8-tim13 complex
87d1f1sa3



not modelled 10.1 18 Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
88d2nlla_



not modelled 10.1 20 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
89c3dzyA_



not modelled 10.1 27 PDB header:transcription/dna
Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide
90d1cita_



not modelled 10.0 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
91c2khbA_



not modelled 9.9 30 PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
92c1m4xC_



not modelled 9.9 33 PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model
93c3cw1Z_



not modelled 9.9 15 PDB header:splicing
Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
94d1w9pa2



not modelled 9.8 18 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
95d1t3da_



not modelled 9.7 32 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Serine acetyltransferase
96c2e2wA_



not modelled 9.7 16 PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
97d2oqea2



not modelled 9.7 25 Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
98c3fybA_



not modelled 9.6 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
99c1i84V_



not modelled 9.6 18 PDB header:contractile protein
Chain: V: PDB Molecule:smooth muscle myosin heavy chain;
PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0