Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3dzyA_

Fold library idPDB HeaderMoleculeTitle
c3dzyA_PDB header: transcription/dnaChain: A: PDB Molecule: retinoic acid receptor rxr-alpha;PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide


Added to library: Tue Mar 16 13:02:33 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMK
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)

TTTSS
STT

TT




SSSS




SSSSSS
TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence REAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAPVTNICQAADKQLFTLVEWAKRIPHFSELP
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) GGG



S





S
SS
TTSTT
S
SS



TTSTTSTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TSSSTTB


SSS


BTTTT
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCL
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) S
TTSTT
S

TT
TTT
 .........290.........300..
Sequence EHLFFFKLIGDTPIDTFLMEML
Predicted secondary structure






SS confidence





















Known secondary structure (DSSP) TTTTTSTTS




S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D