Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	K	S	I	V	Q	E	A	R	D	I	Q	L	A	M	E	L	I	T	L	G	A	R	L	Q	M	L	E	S	E	T	Q	L	S	R	G	R	L	I	K	L	Y	K	E	L	R	G	S	P	P	P	K	G	M	L	P	F	S
Secondary structure
SS confidence
Disorder		?	?	?																														?	?	?	?													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	D	W	F	M	T	W	E	Q	N	V	H	A	S	M	F	C	N	A	W	Q	F	L	L	K	T	G	L	C	N	G	V	D	A	V	I	K	A	Y	R	L	Y	L	E	Q	C	P	Q	A	E	E	G	P	L	L	A	L	T	R	A
Secondary structure
SS confidence
Disorder																											?	?																				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	T	L	V	R	F	V	E	S	G	L	L	Q	L	S	S	C	N	C	C	G	G	N	F	I	T	H	A	H	Q	P	V	G	S	F	A	C	S	L	C	Q	P	P	S	R	A	V	K	R	R	K	L	S	Q	N	P	A	D	I	I
Secondary structure
SS confidence
Disorder											?																						?	?											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.
Sequence		P	Q	L	L	D	E	Q	R	V	Q	A	V
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2avu chain E domain 1 Region: 5 - 160 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 100% Fold: FlhC-like Superfamily: FlhC-like Family: FlhC-like Phyre2 PDB 2avu chain F Region: 5 - 160 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 100% PDB header:transcription activator Chain: F: PDB Molecule:flagellar transcriptional activator flhc; PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription Phyre2 PDB 1ee8 chain A Region: 136 - 162 Aligned: 27 Modelled: 27 Confidence: 88.8% Identity: 26% PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 Phyre2 PDB 1k82 chain D Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 86.8% Identity: 31% PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna Phyre2 PDB 1zgw chain A Region: 8 - 52 Aligned: 45 Modelled: 45 Confidence: 86.3% Identity: 24% PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna Phyre2 PDB 1nnj chain A Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 85.1% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Phyre2 PDB 2opf chain A Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 84.7% Identity: 23% PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate Phyre2 PDB 1ee8 chain A domain 3 Region: 136 - 164 Aligned: 29 Modelled: 29 Confidence: 82.0% Identity: 24% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 2f5q chain A Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 81.4% Identity: 27% PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 Phyre2 PDB 1tdz chain A domain 3 Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 79.2% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1r2z chain A domain 3 Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 78.7% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1k82 chain A domain 3 Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 78.5% Identity: 31% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1l1t chain A domain 3 Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 78.4% Identity: 27% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1k3x chain A domain 3 Region: 136 - 161 Aligned: 26 Modelled: 26 Confidence: 78.3% Identity: 23% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 3eg9 chain B Region: 127 - 161 Aligned: 34 Modelled: 35 Confidence: 75.3% Identity: 21% PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Phyre2 PDB 3eh2 chain B Region: 127 - 161 Aligned: 34 Modelled: 35 Confidence: 72.5% Identity: 24% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Phyre2 PDB 3a46 chain B Region: 136 - 163 Aligned: 28 Modelled: 28 Confidence: 72.5% Identity: 7% PDB header:hydrolase Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of mvnei1/thf complex Phyre2 PDB 1pd0 chain A Region: 136 - 161 Aligned: 25 Modelled: 26 Confidence: 71.7% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) Phyre2 PDB 1m2v chain B Region: 134 - 161 Aligned: 27 Modelled: 28 Confidence: 71.1% Identity: 15% PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer Phyre2 PDB 2hr5 chain B Region: 117 - 164 Aligned: 43 Modelled: 48 Confidence: 65.6% Identity: 21% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 3iz6 chain X Region: 135 - 175 Aligned: 40 Modelled: 40 Confidence: 63.4% Identity: 15% PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1qxf chain A Region: 135 - 180 Aligned: 45 Modelled: 45 Confidence: 62.9% Identity: 13% Fold: Rubredoxin-like Superfamily: Zn-binding ribosomal proteins Family: Ribosomal protein S27e Phyre2 1 d2avue1 2 c2avuF_ 3 c1ee8A_ 4 c1k82D_ 5 c1zgwA_ 6 c1nnjA_ 7 c2opfA_ 8 d1ee8a3 9 c2f5qA_ 10 d1tdza3 11 d1r2za3 12 d1k82a3 13 d1l1ta3 14 d1k3xa3 15 c3eg9B_ 16 c3eh2B_ 17 c3a46B_ 18 c1pd0A_ 19 c1m2vB_ 20 c2hr5B_ 21 c3iz6X_ 22 23 24 d1qxfa_ 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2avue1 100.0 100 Fold:FlhC-like Superfamily:FlhC-like Family:FlhC-like 2 c2avuF_ 100.0 100 PDB header:transcription activator Chain: F: PDB Molecule:flagellar transcriptional activator flhc; PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription 3 c1ee8A_ 88.8 26 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 4 c1k82D_ 86.8 31 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 5 c1zgwA_ 86.3 24 PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna 6 c1nnjA_ 85.1 27 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 7 c2opfA_ 84.7 23 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 8 d1ee8a3 82.0 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 9 c2f5qA_ 81.4 27 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 10 d1tdza3 79.2 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 11 d1r2za3 78.7 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 12 d1k82a3 78.5 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 13 d1l1ta3 78.4 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 14 d1k3xa3 78.3 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 15 c3eg9B_ 75.3 21 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 16 c3eh2B_ 72.5 24 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c 17 c3a46B_ 72.5 7 PDB header:hydrolase Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of mvnei1/thf complex 18 c1pd0A_ 71.7 16 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) 19 c1m2vB_ 71.1 15 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 20 c2hr5B_ 65.6 21 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 21 c3iz6X_ 63.4 15 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 22 d2akla2 not modelled 63.3 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 23 c1m2oA_ not modelled 62.9 20 PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex 24 d1qxfa_ 62.9 13 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 25 c3izbX_ not modelled 62.2 20 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 26 c2aklA_ not modelled 60.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 27 c2x48B_ not modelled 56.5 21 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 28 c1dvbA_ not modelled 52.7 24 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 29 c2kn9A_ not modelled 51.0 17 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 30 d1bl0a1 not modelled 48.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 31 c3a44D_ not modelled 46.0 15 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 32 c1yuzB_ not modelled 45.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 33 d1vdda_ not modelled 45.2 24 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 34 c3rfaA_ not modelled 44.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 35 d2gnra1 not modelled 44.4 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 36 d2dsxa1 not modelled 43.8 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 37 c3egxB_ not modelled 43.6 26 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 38 c2kdxA_ not modelled 43.4 14 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 39 c1vddC_ not modelled 42.9 24 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 40 d1mm2a_ not modelled 42.1 29 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 41 d1ywsa1 not modelled 41.8 25 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 42 c2pptA_ not modelled 40.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 43 d1pd0a5 not modelled 39.7 14 Fold:Rubredoxin-like Superfamily:Zn-finger domain of Sec23/24 Family:Zn-finger domain of Sec23/24 44 c2xzm6_ not modelled 38.9 10 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 45 d1dx8a_ not modelled 38.6 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 46 d1bl0a2 not modelled 36.7 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 47 d1d5ya1 not modelled 36.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 48 d1lkoa2 not modelled 35.8 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 49 c2gb5B_ not modelled 35.0 27 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 50 d1nnqa2 not modelled 33.5 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 51 d1k78a1 not modelled 32.6 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 52 d6rxna_ not modelled 32.3 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 53 d4rxna_ not modelled 31.8 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 54 d1yuza2 not modelled 31.6 29 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 55 d1u5ka2 not modelled 31.2 16 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like 56 d1iroa_ not modelled 30.0 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 57 c2v3bB_ not modelled 28.1 20 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 58 d1olta_ not modelled 28.0 14 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 59 d1wgea1 not modelled 27.9 29 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 60 d1s24a_ not modelled 27.9 18 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 61 c1s24A_ not modelled 27.9 18 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 62 c1u78A_ not modelled 27.5 12 PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna 63 d2gmga1 not modelled 27.2 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 64 d1wfha_ not modelled 26.5 27 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 65 d1qcva_ not modelled 25.0 13 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 66 d1dl6a_ not modelled 24.9 17 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 67 c3mn2B_ not modelled 24.8 21 PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 68 d1wfpa_ not modelled 24.7 32 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 69 d6paxa1 not modelled 24.5 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 70 d2rdva_ not modelled 23.7 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 71 d1wg2a_ not modelled 23.7 32 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 72 c2js4A_ not modelled 23.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 73 d1rb9a_ not modelled 23.0 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 74 d1iu5a_ not modelled 21.9 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 75 d1h7va_ not modelled 21.9 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 76 d1wfla_ not modelled 21.7 23 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 77 c1x4iA_ not modelled 21.5 17 PDB header:cell adhesion Chain: A: PDB Molecule:inhibitor of growth protein 3; PDBTitle: solution structure of phd domain in inhibitor of growth2 protein 3 (ing3) 78 d1y02a2 not modelled 21.4 33 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 79 d1twfb_ not modelled 21.2 27 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 80 c3lsgD_ not modelled 20.9 33 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 81 d1d5ya2 not modelled 19.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 82 c1x4wA_ not modelled 19.5 32 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein flj13222; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein flj13222 83 d1z60a1 not modelled 19.5 26 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:TFIIH p44 subunit cysteine-rich domain 84 d1wffa_ not modelled 19.4 32 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 85 c3mv2A_ not modelled 18.9 8 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 86 c2pmzB_ not modelled 18.8 22 PDB header:translation, transferase Chain: B: PDB Molecule:dna-directed rna polymerase subunit b; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 87 c2y0fD_ not modelled 18.2 21 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 88 c3mkrB_ not modelled 18.2 11 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 89 c3k7aM_ not modelled 17.8 24 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 90 d1wiia_ not modelled 17.7 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 91 d2ayja1 not modelled 17.7 11 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e 92 d1brfa_ not modelled 17.7 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 93 d2eppa1 not modelled 17.1 20 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 c2adrA_ not modelled 16.9 36 PDB header:transcription regulation Chain: A: PDB Molecule:adr1; PDBTitle: adr1 dna-binding domain from saccharomyces cerevisiae, nmr,2 25 structures 95 c3mklB_ not modelled 16.6 15 PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 96 c2yrcA_ not modelled 16.6 23 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: solution structure of the zf-sec23_sec24 from human sec23a 97 c3c8fA_ not modelled 16.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 98 d1mm3a_ not modelled 16.6 28 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 99 c2jr6A_ not modelled 16.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0