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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3eh2B_

Fold library idPDB HeaderMoleculeTitle
c3eh2B_PDB header: protein transportChain: B: PDB Molecule: protein transport protein sec24c;PDBTitle: crystal structure of the human copii-coat protein sec24c


Added to library: Tue Mar 16 13:44:06 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEAS
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Known secondary structure (DSSP)




STT




TTS



SSS

TTTSBSSS



TT



TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence PYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSL
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Known secondary structure (DSSP)




TT
S
B
TTT

B

TT
GGGT
TTT



TTS


B
SSSBS
STTT
GGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVT
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Known secondary structure (DSSP) S

GGGSGGG






STTTGGG



TT
SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence YNKVLHFYNQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEA
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Known secondary structure (DSSP) SSS




SS





SSSSB
TTTSTT






S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLF
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Known secondary structure (DSSP) T


S


SSSTT






TTSTTSTTSS
SSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence PNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGA
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Known secondary structure (DSSP)
SS


TTT


TT

S

TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLY
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Known secondary structure (DSSP)
B
SSSS
SS

SS

BTTTB
TTS
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCGQLILPECMKLLPVYLNCVLKSD
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Known secondary structure (DSSP) TTB
TTTS
TT






GGGTTST
 .........570.........580.........590.........600.........610.........620.........630
Sequence VLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLEN
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Known secondary structure (DSSP) TTS

TT



S

SS


TTTT





SSGGG

TT

 .........640.........650.........660.........670.........680.........690.........700
Sequence GLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQE
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Known secondary structure (DSSP) SS
TT

S
SSGGGS
TT

S



SSTSSS

SS
 .........710.........720.........730.........
Sequence DKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS
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Known secondary structure (DSSP) STTTT
TTS

SSS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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