Phyre 2 Results for P0ABY7

Email | l.a.kelley@imperial.ac.uk
Description | P0ABY7
Date | Thu Jan 5 11:16:42 GMT 2012
Unique Job ID | 7d2e382eb99dba87

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2avue1 |
|  | 100.0 | 100 | Fold:FlhC-like Superfamily:FlhC-like Family:FlhC-like
2 | c2avuF_ |
|  | 100.0 | 100 | PDB header:transcription activator Chain: F: PDB Molecule:flagellar transcriptional activator flhc; PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
3 | c1ee8A_ |
|  | 88.8 | 26 | PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
4 | c1k82D_ |
|  | 86.8 | 31 | PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
5 | c1zgwA_ |
|  | 86.3 | 24 | PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna
6 | c1nnjA_ |
|  | 85.1 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
7 | c2opfA_ |
|  | 84.7 | 23 | PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
8 | d1ee8a3 |
|  | 82.0 | 24 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
9 | c2f5qA_ |
|  | 81.4 | 27 | PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
10 | d1tdza3 |
|  | 79.2 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
11 | d1r2za3 |
|  | 78.7 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
12 | d1k82a3 |
|  | 78.5 | 31 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
13 | d1l1ta3 |
|  | 78.4 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
14 | d1k3xa3 |
|  | 78.3 | 23 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
15 | c3eg9B_ |
|  | 75.3 | 21 | PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin
16 | c3eh2B_ |
|  | 72.5 | 24 | PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c
17 | c3a46B_ |
|  | 72.5 | 7 | PDB header:hydrolase Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of mvnei1/thf complex
18 | c1pd0A_ |
|  | 71.7 | 16 | PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)
19 | c1m2vB_ |
|  | 71.1 | 15 | PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer
20 | c2hr5B_ |
|  | 65.6 | 21 | PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
21 | c3iz6X_ |
|  | 63.4 | 15 | PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
22 | d2akla2 |
| not modelled | 63.3 | 19 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain
23 | c1m2oA_ |
| not modelled | 62.9 | 20 | PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex
24 | d1qxfa_ |
|  | 62.9 | 13 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e
25 | c3izbX_ |
| not modelled | 62.2 | 20 | PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
26 | c2aklA_ |
| not modelled | 60.9 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
27 | c2x48B_ |
| not modelled | 56.5 | 21 | PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
28 | c1dvbA_ |
| not modelled | 52.7 | 24 | PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin
29 | c2kn9A_ |
| not modelled | 51.0 | 17 | PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
30 | d1bl0a1 |
| not modelled | 48.8 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator
31 | c3a44D_ |
| not modelled | 46.0 | 15 | PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form
32 | c1yuzB_ |
| not modelled | 45.4 | 12 | PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin
33 | d1vdda_ |
| not modelled | 45.2 | 24 | Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR
34 | c3rfaA_ |
| not modelled | 44.5 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine
35 | d2gnra1 |
| not modelled | 44.4 | 27 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like
36 | d2dsxa1 |
| not modelled | 43.8 | 23 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
37 | c3egxB_ |
| not modelled | 43.6 | 26 | PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1
38 | c2kdxA_ |
| not modelled | 43.4 | 14 | PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein
39 | c1vddC_ |
| not modelled | 42.9 | 24 | PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr
40 | d1mm2a_ |
| not modelled | 42.1 | 29 | Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain
41 | d1ywsa1 |
| not modelled | 41.8 | 25 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
42 | c2pptA_ |
| not modelled | 40.7 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2
43 | d1pd0a5 |
| not modelled | 39.7 | 14 | Fold:Rubredoxin-like Superfamily:Zn-finger domain of Sec23/24 Family:Zn-finger domain of Sec23/24
44 | c2xzm6_ |
| not modelled | 38.9 | 10 | PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
45 | d1dx8a_ |
| not modelled | 38.6 | 20 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
46 | d1bl0a2 |
| not modelled | 36.7 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator
47 | d1d5ya1 |
| not modelled | 36.1 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator
48 | d1lkoa2 |
| not modelled | 35.8 | 17 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
49 | c2gb5B_ |
| not modelled | 35.0 | 27 | PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
50 | d1nnqa2 |
| not modelled | 33.5 | 22 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
51 | d1k78a1 |
| not modelled | 32.6 | 33 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
52 | d6rxna_ |
| not modelled | 32.3 | 25 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
53 | d4rxna_ |
| not modelled | 31.8 | 25 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
54 | d1yuza2 |
| not modelled | 31.6 | 29 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
55 | d1u5ka2 |
| not modelled | 31.2 | 16 | Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like
56 | d1iroa_ |
| not modelled | 30.0 | 25 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
57 | c2v3bB_ |
| not modelled | 28.1 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa.
58 | d1olta_ |
| not modelled | 28.0 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN
59 | d1wgea1 |
| not modelled | 27.9 | 29 | Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger
60 | d1s24a_ |
| not modelled | 27.9 | 18 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
61 | c1s24A_ |
| not modelled | 27.9 | 18 | PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans
62 | c1u78A_ |
| not modelled | 27.5 | 12 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
63 | d2gmga1 |
| not modelled | 27.2 | 26 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like
64 | d1wfha_ |
| not modelled | 26.5 | 27 | Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger
65 | d1qcva_ |
| not modelled | 25.0 | 13 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
66 | d1dl6a_ |
| not modelled | 24.9 | 17 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain
67 | c3mn2B_ |
| not modelled | 24.8 | 21 | PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009
68 | d1wfpa_ |
| not modelled | 24.7 | 32 | Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger
69 | d6paxa1 |
| not modelled | 24.5 | 35 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain
70 | d2rdva_ |
| not modelled | 23.7 | 28 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
71 | d1wg2a_ |
| not modelled | 23.7 | 32 | Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger
72 | c2js4A_ |
| not modelled | 23.3 | 28 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
73 | d1rb9a_ |
| not modelled | 23.0 | 22 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
74 | d1iu5a_ |
| not modelled | 21.9 | 22 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
75 | d1h7va_ |
| not modelled | 21.9 | 19 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
76 | d1wfla_ |
| not modelled | 21.7 | 23 | Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger
77 | c1x4iA_ |
| not modelled | 21.5 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:inhibitor of growth protein 3; PDBTitle: solution structure of phd domain in inhibitor of growth2 protein 3 (ing3)
78 | d1y02a2 |
| not modelled | 21.4 | 33 | Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
79 | d1twfb_ |
| not modelled | 21.2 | 27 | Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta
80 | c3lsgD_ |
| not modelled | 20.9 | 33 | PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
81 | d1d5ya2 |
| not modelled | 19.8 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator
82 | c1x4wA_ |
| not modelled | 19.5 | 32 | PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein flj13222; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein flj13222
83 | d1z60a1 |
| not modelled | 19.5 | 26 | Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:TFIIH p44 subunit cysteine-rich domain
84 | d1wffa_ |
| not modelled | 19.4 | 32 | Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger
85 | c3mv2A_ |
| not modelled | 18.9 | 8 | PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop
86 | c2pmzB_ |
| not modelled | 18.8 | 22 | PDB header:translation, transferase Chain: B: PDB Molecule:dna-directed rna polymerase subunit b; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
87 | c2y0fD_ |
| not modelled | 18.2 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
88 | c3mkrB_ |
| not modelled | 18.2 | 11 | PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
89 | c3k7aM_ |
| not modelled | 17.8 | 24 | PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
90 | d1wiia_ |
| not modelled | 17.7 | 27 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain
91 | d2ayja1 |
| not modelled | 17.7 | 11 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e
92 | d1brfa_ |
| not modelled | 17.7 | 28 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
93 | d2eppa1 |
| not modelled | 17.1 | 20 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
94 | c2adrA_ |
| not modelled | 16.9 | 36 | PDB header:transcription regulation Chain: A: PDB Molecule:adr1; PDBTitle: adr1 dna-binding domain from saccharomyces cerevisiae, nmr,2 25 structures
95 | c3mklB_ |
| not modelled | 16.6 | 15 | PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12
96 | c2yrcA_ |
| not modelled | 16.6 | 23 | PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: solution structure of the zf-sec23_sec24 from human sec23a
97 | c3c8fA_ |
| not modelled | 16.6 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet
98 | d1mm3a_ |
| not modelled | 16.6 | 28 | Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain
99 | c2jr6A_ |
| not modelled | 16.4 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32