BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (192 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   374   e-102
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   362   5e-99
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   334   8e-91
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   317   9e-86
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   234   1e-60
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   230   2e-59
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   195   7e-49
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   190   2e-47
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   187   1e-46
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   186   4e-46
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   186   5e-46
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...    57   4e-07
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...    50   4e-05
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...    46   6e-04
UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...    40   0.032

>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  362 bits (928), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  334 bits (857), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 161/193 (83%), Positives = 177/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCP-QAEEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCP QA E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  317 bits (813), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 151/187 (80%), Positives = 165/187 (88%), Gaps = 2/187 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEG--PLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP    G  P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLD 185
              QLLD
Sbjct: 181 TNSQLLD 187


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/186 (47%), Positives = 128/186 (68%), Gaps = 1/186 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDE 186
           P+ L +
Sbjct: 183 PEDLQQ 188


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 112/158 (70%)

Query: 4   KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDW 63
           +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS DW
Sbjct: 11  RSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSADW 70

Query: 64  FMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTL 123
           F+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR WTL
Sbjct: 71  FVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFWTL 130

Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           VRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 131 VRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 114/168 (67%)

Query: 4   KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDW 63
           KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTDW
Sbjct: 28  KSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTDW 87

Query: 64  FMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTL 123
           F++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWTL
Sbjct: 88  FVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWTL 147

Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           VRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK
Sbjct: 148 VRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRK 195


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)

Query: 19  LITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGMLPFSTDW---FMTWEQNV 71
           L   GAR + +++      G  I  ++E    L G  P  GM P S D+   F    +  
Sbjct: 19  LCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGMSP-SPDFGSFFQKPNRRF 77

Query: 72  HASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGL 131
             S+  +++  L   G  + VDA+I+AY  + E  P  E+    +  RA  L R  +SG 
Sbjct: 78  DCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSMEFSFERALMLARAFDSGE 135

Query: 132 LQLSSCNCCGGNFITHAHQPV-------GSFACSLCQPPSRAV 167
           L+L+ C CC  N +   ++PV       G+F  S  +  SR V
Sbjct: 136 LRLTECECCSSNHVHERNEPVMCPVCNNGNFGGSRKRHKSRVV 178


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 16/188 (8%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMY---RPPPRISFD 115

Query: 119 RAWTLVRFVESGL-------LQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRR 170
           RA+ L    E GL        +L+SC+ C   F+ T A     +  C  CQ   R  +  
Sbjct: 116 RAFDLAAHTE-GLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDP 174

Query: 171 KLSQNPAD 178
           +L+ + A+
Sbjct: 175 RLTASFAE 182


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score = 46.2 bits (108), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 19  LITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCN 78
           LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +    V  S+   
Sbjct: 17  LIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKSRRALVEGSLLMA 76

Query: 79  AWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAE---EGP--LLALTRAWTLVRFVESGL 131
            +  +    +     +DA++KAY  YL    +A+   E P   L +   W L R + S L
Sbjct: 77  LYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINEGWVLARDLRSQL 136

Query: 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
             L  C  CG  ++T + Q +    C +C+
Sbjct: 137 ASLHRCR-CGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score = 40.4 bits (93), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 28/167 (16%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRLIKL-YKELRGSPPPKGMLPFSTDWFMTWE- 68
           R +QLA +L  LGARL+ +   T +   ++  L + + R    P+G  P S +W+     
Sbjct: 10  RAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFPDARTI--PRGRAPDSAEWYHGANL 67

Query: 69  -QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVR 125
                A +    +  L   GL  G +A++ AYR Y     QA   P   ++L RA+ LV 
Sbjct: 68  ILRTDACLIGARYCQLRNQGLATG-EALVFAYRAY-----QAATLPPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVGSFA-----CSLCQ 161
           +++      +  L + +C  CG  FI      VG+ A     C  C+
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIA----AVGTVAHPGEPCPFCK 164


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   324   1e-87
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   319   2e-86
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   315   6e-85
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   305   4e-82
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   278   6e-74
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   265   7e-70
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   257   1e-67
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   257   2e-67
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   249   4e-65
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   247   2e-64
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   238   7e-62
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...   177   2e-43
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...   156   3e-37
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...   150   3e-35

Sequences not found previously or not previously below threshold:

UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...    94   2e-18
UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp...    80   3e-14
UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula...    74   3e-12
UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston...    65   9e-10
UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap...    64   3e-09
UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar...    63   5e-09
UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom...    62   1e-08
UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine...    56   5e-07
UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop...    55   1e-06
UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom...    49   1e-04
UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom...    43   0.005
UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav...    39   0.084

>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  324 bits (830), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  319 bits (818), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  315 bits (806), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 161/193 (83%), Positives = 177/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCP-QAEEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCP QA E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  305 bits (782), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP     + P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLDEQRVQAV 192
              QLLD    +A+
Sbjct: 181 TNSQLLDGFAQKAM 194


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  278 bits (711), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  265 bits (677), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  257 bits (657), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDEQR 188
           P+ L +  
Sbjct: 183 PEDLQQTI 190


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  257 bits (656), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  249 bits (635), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
            KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTD
Sbjct: 27  GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122
           WF++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWT
Sbjct: 87  WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176
           LVRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK +   
Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  247 bits (630), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  238 bits (607), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
             +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS 
Sbjct: 9   PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           DWF+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR W
Sbjct: 69  DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score =  177 bits (449), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMY---RPPPRISFD 115

Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171
           RA+ L    E      +   +L+SC+ C   F+ T A     +  C  CQ   R  +  +
Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175

Query: 172 LSQNPAD 178
           L+ + A+
Sbjct: 176 LTASFAE 182


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score =  156 bits (395), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 17/165 (10%)

Query: 19  LITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGMLPFSTDW---FMTWEQNV 71
           L   GAR + +++      G  I  ++E    L G  P  GM P S D+   F    +  
Sbjct: 19  LCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGMSP-SPDFGSFFQKPNRRF 77

Query: 72  HASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGL 131
             S+  +++  L   G  + VDA+I+AY  + E  P  E+    +  RA  L R  +SG 
Sbjct: 78  DCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSMEFSFERALMLARAFDSGE 135

Query: 132 LQLSSCNCCGGNFITHAHQPV-------GSFACSLCQPPSRAVKR 169
           L+L+ C CC  N +   ++PV       G+F  S  +  SR V  
Sbjct: 136 LRLTECECCSSNHVHERNEPVMCPVCNNGNFGGSRKRHKSRVVAT 180


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score =  150 bits (378), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + ++     A  LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +
Sbjct: 5   LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64

Query: 67  WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGP-----LLALTR 119
               V  S+    +  +    +     +DA++KAY  YL    +A+         L +  
Sbjct: 65  RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
            W L R + S L  L  C  CG  ++T + Q +    C +C+
Sbjct: 125 GWVLARDLRSQLASLHRC-RCGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 8   QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67
           +  R +QLA +L  LGARL+ +   T +   ++  L+        P+G  P S +W+   
Sbjct: 7   RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65

Query: 68  E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
                  A +    +  L   GL  G +A++ AYR Y            ++L RA+ LV 
Sbjct: 66  NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176
           +++      +  L + +C  CG  FI            C  C+   R     ++  + 
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179


>UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MEH2_9ENTR
          Length = 176

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
           + ++V++     L  +++ LG R +++      S   +  L KE   S    G L  S  
Sbjct: 2   KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61

Query: 63  WFMTWEQNVHASMFCNAWQFLLKT-GLCNGVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117
              T  + V A+ F + +    K     + +  V+ A+ +Y E      P+     ++  
Sbjct: 62  LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160
             AWTL R   +  +++  C  C  +FI+     +P     C  C
Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166


>UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms
           RepID=A9ARR3_BURM1
          Length = 401

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A  L+  G R     S  +L++  + + + E+ G+  P G  P S  WF+ T    +H +
Sbjct: 234 ASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVETPTNRLHGT 293

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESG-LLQ 133
           +F   ++  L     N   A+I    +Y +          +++ R   L R + +   L 
Sbjct: 294 IFTWLYRAALAA-GANAPQALIATNDVYQQIFGGQH---AISVDRGCNLTRAMAADNRLT 349

Query: 134 LSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170
           ++ C  C   ++   ++       SF C  C     P  R  K R
Sbjct: 350 IAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394


>UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia
           RepID=B2UCN2_RALPJ
          Length = 393

 Score = 65.5 bits (158), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 21/176 (11%)

Query: 9   EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
            A+  +    LI L  R   + S    +      LY+++ G   P G++P S+ W++ + 
Sbjct: 223 RAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVESV 282

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAY----RLYLEQCPQAEEGPLLALTRAWTL 123
              + ++     +   L     N  +A I A     RL+        +   L   RA+ L
Sbjct: 283 SSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF-------GDAARLTPDRAFHL 334

Query: 124 VRFVESGL-LQLSSCNCCGGNFITHAHQPV----GSFACSLC---QPPSRAVKRRK 171
            R V +G  L +SSC  C  +++T    P      SF C  C       R  K RK
Sbjct: 335 ARSVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390


>UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria
           RepID=C4NV70_ECOLX
          Length = 183

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQNV 71
           A  +   G   +++  ET L+  ++ +LY++L   G    +    F        +    +
Sbjct: 15  ARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSKI 74

Query: 72  HASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWTL 123
            AS+    +  +    +     + A+ KA+R+Y     +   G          +T AW L
Sbjct: 75  QASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWCL 133

Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
              + SG   L  C+ C   + T  +Q      C  C+   R     K
Sbjct: 134 ASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180


>UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris
           RepID=Q8L260_PROVU
          Length = 163

 Score = 63.1 bits (152), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHAS 74
           L   ++ LG R  ++ +    +   +  L +        +G L  +T +    +  + ++
Sbjct: 12  LLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSMKQDTIEST 71

Query: 75  MFCNAWQFLLKT-GLCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAWTLVRFVES 129
            F   +  + K     + +  +I A+ ++        P+     ++    AW L R   +
Sbjct: 72  NFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAWILARDYRT 131

Query: 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
             +++ +C  C  ++I+  +       C  C
Sbjct: 132 EEIKMVTCTHCNNHYIS-PYDEKPKHKCPFC 161


>UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q11ZG5_POLSJ
          Length = 197

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68
             I    EL++  AR   +          +   ++Y E     PP G  P      + + 
Sbjct: 19  EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77

Query: 69  QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124
              + S     +        C GV    A++  YRLY  +     +E  L++    + + 
Sbjct: 78  SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136

Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182
             +E+   +L  C  CG   +   H  V S  C  C   + A   RK +     ++P+
Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192


>UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae
           EF01-2 RepID=A1WPA9_VEREI
          Length = 183

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 32/177 (18%)

Query: 12  DIQL---AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
           D+QL   A  +  + AR  ++   T LS     K++ +  G   P G  P    WF+ + 
Sbjct: 6   DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112
            + +H ++    +    K        A   AY  Y                    Q+E+ 
Sbjct: 66  LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123

Query: 113 PLLALTRA-WTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
            ++   RA +  + + +  L        LQ   C  CG  ++ H  +      C +C
Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEVSS--KCPIC 178


>UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
           RepID=D2TXU7_9ENTR
          Length = 173

 Score = 55.4 bits (132), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 22/165 (13%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG---------MLPFSTDWFM 65
           LA+E+I LG R  ++ SE            K   G     G          L      F+
Sbjct: 7   LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS---GNGYDEKRLRRLKKVNRVFV 63

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LAL 117
                 H S+F   +  +         ++ ++ AY  Y E     C    +      +  
Sbjct: 64  DDNLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDA 123

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160
             AW +     S ++ L  C  C     ++T     V +  C+ C
Sbjct: 124 NMAWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168


>UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas
           naphthalenivorans CJ2 RepID=A1VVD0_POLNA
          Length = 180

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A+ +  + AR  ++     L++     ++K+      P G  P + DW++ T ++    +
Sbjct: 14  AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118
           +F   +Q            A+   Y  +        +GP                 L  +
Sbjct: 74  LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131

Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
           RA+ L+    +          L +  C  C G ++    +  G   C LC
Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179


>UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas
           RepID=B7XGS9_PSEPU
          Length = 344

 Score = 43.1 bits (100), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKG--MLPFSTDWFMTWE 68
           +A EL+    + +++   T L+   +++    L +++       G    P  T      E
Sbjct: 195 VATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAE 250

Query: 69  QNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVR 125
             +H+ ++   ++ L    L      AV+ A+R Y+E C         +++ +  + L  
Sbjct: 251 SPLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSN 310

Query: 126 FVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162
            +++G + L+ C+ C      +A +P     C  C  
Sbjct: 311 AMKTGDITLTPCSKCKEINARYALKPGR---CIWCNH 344


>UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus
           RepID=Q5NV35_RALME
          Length = 392

 Score = 38.9 bits (89), Expect = 0.084,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 22  LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80
            G R + + S    S       Y+ + G   P G  P S  WF+ T  + V ++     +
Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296

Query: 81  QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139
           +  +     +  ++ + A  +         +   +   R+  L R +  S  L +  C  
Sbjct: 297 RSAIAR-EVSTPESFVAAIDINRTFFA---DDCKVPPERSMHLARSMAMSEELAVWPCRK 352

Query: 140 CGGNFIT----HAHQPVGSFACSLCQ---PPSRAVKRRK 171
           CG  ++        + + SF C  C      +R   RR+
Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   277   1e-73
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   273   2e-72
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   270   2e-71
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   266   3e-70
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   243   2e-63
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   228   6e-59
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   226   4e-58
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   221   7e-57
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   221   1e-56
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   213   4e-54
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   205   8e-52
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...   158   1e-37
UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp...   147   3e-34
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...   141   1e-32
UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...   140   2e-32
UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar...   136   4e-31
UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula...   134   1e-30
UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap...   134   2e-30
UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston...   133   2e-30
UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom...   132   5e-30
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...   130   3e-29
UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop...   124   2e-27
UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom...   121   1e-26
UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine...   114   2e-24

Sequences not found previously or not previously below threshold:

UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav...    72   8e-12
UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom...    52   9e-06
UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polarom...    44   0.002
UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole geno...    40   0.033

>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  277 bits (708), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  273 bits (698), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  270 bits (691), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 160/193 (82%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQA-EEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCPQ   E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  266 bits (680), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP     + P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLDEQRVQAV 192
              QLLD    +A+
Sbjct: 181 TNSQLLDGFAQKAM 194


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  243 bits (621), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  228 bits (582), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDEQR 188
           P+ L +  
Sbjct: 183 PEDLQQTI 190


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  226 bits (575), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  221 bits (564), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  221 bits (562), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
            KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTD
Sbjct: 27  GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122
           WF++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWT
Sbjct: 87  WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176
           LVRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK +   
Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  213 bits (541), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  205 bits (521), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
             +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS 
Sbjct: 9   PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           DWF+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR W
Sbjct: 69  DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score =  158 bits (399), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMYR---PPPRISFD 115

Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171
           RA+ L    E      +   +L+SC+ C   F+ T A     +  C  CQ   R  +  +
Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175

Query: 172 LSQNPAD 178
           L+ + A+
Sbjct: 176 LTASFAE 182


>UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MEH2_9ENTR
          Length = 176

 Score =  147 bits (370), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
           + ++V++     L  +++ LG R +++      S   +  L KE   S    G L  S  
Sbjct: 2   KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117
              T  + V A+ F + +    K    +  +  V+ A+ +Y E      P+     ++  
Sbjct: 62  LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160
             AWTL R   +  +++  C  C  +FI+     +P     C  C
Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score =  141 bits (356), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + ++     A  LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +
Sbjct: 5   LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64

Query: 67  WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGP-----LLALTR 119
               V  S+    +  +    +     +DA++KAY  YL    +A+         L +  
Sbjct: 65  RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
            W L R + S L  L  C  CG  ++T + Q +    C +C+
Sbjct: 125 GWVLARDLRSQLASLHRC-RCGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score =  140 bits (354), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 8   QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67
           +  R +QLA +L  LGARL+ +   T +   ++  L+        P+G  P S +W+   
Sbjct: 7   RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65

Query: 68  E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
                  A +    +  L   GL  G +A++ AYR Y            ++L RA+ LV 
Sbjct: 66  NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176
           +++      +  L + +C  CG  FI            C  C+   R     ++  + 
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179


>UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris
           RepID=Q8L260_PROVU
          Length = 163

 Score =  136 bits (342), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHAS 74
           L   ++ LG R  ++ +    +   +  L +        +G L  +T +    +  + ++
Sbjct: 12  LLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSMKQDTIEST 71

Query: 75  MFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAWTLVRFVES 129
            F   +  + K     + +  +I A+ ++        P+     ++    AW L R   +
Sbjct: 72  NFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAWILARDYRT 131

Query: 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
             +++ +C  C  ++I   +       C  C 
Sbjct: 132 EEIKMVTCTHCNNHYI-SPYDEKPKHKCPFCD 162


>UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms
           RepID=A9ARR3_BURM1
          Length = 401

 Score =  134 bits (338), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           +   R+   A  L+  G R     S  +L++  + + + E+ G+  P G  P S  WF+ 
Sbjct: 225 LPRDRNETYASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVE 284

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           T    +H ++F   ++  L  G      A+I    +Y +          +++ R   L R
Sbjct: 285 TPTNRLHGTIFTWLYRAALAAGANA-PQALIATNDVYQQIFGGQH---AISVDRGCNLTR 340

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170
            + +   L ++ C  C   ++   ++       SF C  C     P  R  K R
Sbjct: 341 AMAADNRLTIAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394


>UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria
           RepID=C4NV70_ECOLX
          Length = 183

 Score =  134 bits (337), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQNV 71
           A  +   G   +++  ET L+  ++ +LY++L   G    +    F        +    +
Sbjct: 15  ARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSKI 74

Query: 72  HASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWTL 123
            AS+    +  +    +     + A+ KA+R+Y     +   G          +T AW L
Sbjct: 75  QASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWCL 133

Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
              + SG   L  C+ C   + T  +Q      C  C+   R     K
Sbjct: 134 ASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180


>UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia
           RepID=B2UCN2_RALPJ
          Length = 393

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           V  A+  +    LI L  R   + S    +      LY+++ G   P G++P S+ W++ 
Sbjct: 221 VGRAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVE 280

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           +    + ++     +   L     N  +A I A            +   L   RA+ L R
Sbjct: 281 SVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLAR 336

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ---PPSRAVKRRK 171
            V +G  L +SSC  C  +++T    P      SF C  C       R  K RK
Sbjct: 337 SVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390


>UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q11ZG5_POLSJ
          Length = 197

 Score =  132 bits (333), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68
             I    EL++  AR   +          +   ++Y E     PP G  P      + + 
Sbjct: 19  EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77

Query: 69  QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124
              + S     +        C GV    A++  YRLY  +     +E  L++    + + 
Sbjct: 78  SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136

Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182
             +E+   +L  C  CG   +   H  V S  C  C   + A   RK +     ++P+
Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score =  130 bits (327), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGM 56
           M    +       +    L   GAR + +++      G  I  ++E    L G  P  GM
Sbjct: 1   MKNTQLRFYIEHERRLKRLCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGM 60

Query: 57  LPFST--DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL 114
            P      +F    +    S+  +++  L   G  + VDA+I+AY  + E  P  E+   
Sbjct: 61  SPSPDFGSFFQKPNRRFDCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSME 118

Query: 115 LALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            +  RA  L R  +SG L+L+ C CC  N +   ++PV    C +C   +    R++
Sbjct: 119 FSFERALMLARAFDSGELRLTECECCSSNHVHERNEPV---MCPVCNNGNFGGSRKR 172


>UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
           RepID=D2TXU7_9ENTR
          Length = 173

 Score =  124 bits (310), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG-------MLPFSTDWFMTW 67
           LA+E+I LG R  ++ SE            K   G     G        L      F+  
Sbjct: 7   LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS-GNGYDEKRLRRLKKVNRVFVDD 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LALTR 119
               H S+F   +  +         ++ ++ AY  Y E     C    +      +    
Sbjct: 66  NLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDANM 125

Query: 120 AWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160
           AW +     S ++ L  C  C     ++T     V +  C+ C
Sbjct: 126 AWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168


>UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas
           naphthalenivorans CJ2 RepID=A1VVD0_POLNA
          Length = 180

 Score =  121 bits (304), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A+ +  + AR  ++     L++     ++K+      P G  P + DW++ T ++    +
Sbjct: 14  AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118
           +F   +Q            A+   Y  +        +GP                 L  +
Sbjct: 74  LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131

Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
           RA+ L+    +          L +  C  C G ++    +  G   C LC
Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179


>UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae
           EF01-2 RepID=A1WPA9_VEREI
          Length = 183

 Score =  114 bits (284), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 9   EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
           + +  + A  +  + AR  ++   T LS     K++ +  G   P G  P    WF+ + 
Sbjct: 6   DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112
            + +H ++    +    K        A   AY  Y                    Q+E+ 
Sbjct: 66  LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123

Query: 113 PLLALTRA-WTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
            ++   RA +  + + +  L        LQ   C  CG  ++ H  +   S  C +C
Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEV--SSKCPIC 178


>UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus
           RepID=Q5NV35_RALME
          Length = 392

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 22  LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80
            G R + + S    S       Y+ + G   P G  P S  WF+ T  + V ++     +
Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296

Query: 81  QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139
           +  +     +  ++ + A  +         +   +   R+  L R +  S  L +  C  
Sbjct: 297 RSAIARE-VSTPESFVAAIDI---NRTFFADDCKVPPERSMHLARSMAMSEELAVWPCRK 352

Query: 140 CGGNFITHAH----QPVGSFACSLC---QPPSRAVKRRK 171
           CG  ++        + + SF C  C      +R   RR+
Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391


>UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas
           RepID=B7XGS9_PSEPU
          Length = 344

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKGM--LPFSTDWFMTWEQ 69
           A EL+    + +++   T L+   +++    L +++       G    P  T      E 
Sbjct: 196 ATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAES 251

Query: 70  NVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVRF 126
            +H+ ++   ++ L           AV+ A+R Y+E C         +++ +  + L   
Sbjct: 252 PLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSNA 311

Query: 127 VESGLLQLSSCNCCG 141
           +++G + L+ C+ C 
Sbjct: 312 MKTGDITLTPCSKCK 326


>UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q120F9_POLSJ
          Length = 237

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 13/174 (7%)

Query: 6   IVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
           +++  +  QL  +L     R Q +++       RL ++  E+   P   G    +  +  
Sbjct: 39  LIRLTQRTQLIKDLTGTDIRPQRIKAAI---DKRLEEMGVEI-QRPRGSGQTYTAKGFLS 94

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVD-----AVIKAYRLYLEQCP---QAEEGPLLAL 117
                  A+            G     D     A+ K    YL  C    + +E   ++ 
Sbjct: 95  KMADKYDAAYLLGLHFGANGPGSLATFDTNLGTALDKRMETYLRYCSDMYERQEDASISF 154

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
                L+  +++  + + +C  C  +++      V   +C +C      VK  K
Sbjct: 155 ETYIVLIEGIKNHEVPMHTCKDCSTSYVWPVGSYV-RHSCPVCAVHQHDVKAAK 207


>UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole genome shotgun sequence
           n=2 Tax=Paramecium tetraurelia RepID=A0BXR5_PARTE
          Length = 496

 Score = 40.5 bits (93), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQL 183
           L   SC+ C  +F    HQ   S  C LC   +R V+ RK       ++ QL
Sbjct: 50  LDPISCDSCMNHFCKRCHQQKQSMKCPLC---NRQVETRKAFPLLRQLLSQL 98


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.310    0.132    0.356 

Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,049,243,022
Number of Sequences: 3077464
Number of extensions: 39113950
Number of successful extensions: 126398
Number of sequences better than 1.0e-01: 28
Number of HSP's better than  0.1 without gapping: 51
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 126254
Number of HSP's gapped (non-prelim): 70
length of query: 192
length of database: 1,040,396,356
effective HSP length: 122
effective length of query: 70
effective length of database: 664,945,748
effective search space: 46546202360
effective search space used: 46546202360
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 89 (38.9 bits)
