Phyre 2 alignment of P0ABY7 with c3mkrB_

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Job Description | P0ABY7
Confidence | 18.17% | Date | Thu Jan 5 11:16:42 GMT 2012
Rank | 88 | Aligned Residues | 38
% Identity | 11% | Template | c3mkrB_
PDB info | PDB header:transport protein | Chain: B: PDB Molecule:coatomer subunit alpha; | PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | S | C | N | C | C | G | G | N | F | I | T | H | A | H | Q | P | V | G | S | F | A | C | S | L | C | Q | P | P | S | R | A | V | K | R | R | K | L | S | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Sequence |  | E | K | C | P | L | S | G | A | C | Y | S | P | . | E | F | K | G | Q | I | C | K | V | T | T | V | T | E | I | G | K | D | V | . | I | G | L | R | I | S | P
Template Known Secondary structure |  |  |  |  | T | T | T |  |  |  |  |  | G | . | G | G | T | T | S | B |  | T | T | T | S | S | B | B | S | S |  |  |  | . |  |  |  |  |  | S | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1183 | . | . | . | . | . | . | 1190 | . | . | . | . |  | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . |  | . | . | . | . | . | . | 1220

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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