Phyre 2 alignment of P0ABY7 with c1m2vB_

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Job Description | P0ABY7
Confidence | 71.09% | Date | Thu Jan 5 11:16:42 GMT 2012
Rank | 19 | Aligned Residues | 27
% Identity | 15% | Template | c1m2vB_
PDB info | PDB header:protein transport | Chain: B: PDB Molecule:protein transport protein sec24; | PDBTitle: crystal structure of the yeast sec23/24 heterodimer
Resolution | 2.75 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 134 | . | . | . | . | . | 140 | . | . | . | . | . |  |  |  | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | S | S | C | N | C | C | G | G | N | F | I | . | . | . | T | H | A | H | Q | P | V | G | S | F | A | C | S | L | C | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | V | R | C | R | R | C | R | S | . | Y | M | N | P | F | V | T | F | I | E | Q | G | R | R | W | R | C | N | F | C | R
Template Known Secondary structure |  |  |  | B |  | S | S | S |  |  | . | B |  |  | T | T |  |  |  |  | T | T | T | T |  |  |  |  | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 228 | . | 230 | . | . | . | . | . | . |  | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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