Phyre 2 alignment of P0ABY7 with d2gmga1

Return to main results | Retrieve Phyre Job Id

Job Description | P0ABY7
Confidence | 27.19% | Date | Thu Jan 5 11:16:42 GMT 2012
Rank | 63 | Aligned Residues | 27
% Identity | 26% | Template | d2gmga1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | PF0610-like
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | L | Q | L | S | S | C | N | C | C | G | G | N | F | I | T | H | A | H | Q | P | V | G | S | F | A | C | S | L | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | I | K | P | A | Q | C | R | K | C | G | F | V | F | . | . | . | K | A | E | I | N | I | P | S | R | C | P | K | C
Template Known Secondary structure |  |  |  |  |  |  | B | B | T | T | T |  |  | B |  | . | . | . |  |  |  | S | S |  |  | S | S |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . |  |  |  | . | . | 80 | . | . | . | . | . | . | . | . | . | 90

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions