Phyre 2 alignment of P0ABY7 with c1m2oA_

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Job Description | P0ABY7
Confidence | 62.94% | Date | Thu Jan 5 11:16:42 GMT 2012
Rank | 23 | Aligned Residues | 25
% Identity | 20% | Template | c1m2oA_
PDB info | PDB header:protein transport/signaling protein | Chain: A: PDB Molecule:protein transport protein sec23; | PDBTitle: crystal structure of the sec23-sar1 complex
Resolution | 2.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 136 | . | . | . | 140 | . | . | . | . | . |  |  |  | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | C | N | C | C | G | G | N | F | I | . | . | . | T | H | A | H | Q | P | V | G | S | F | A | C | S | L | C | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | G | P | H | C | K | S | . | I | L | N | P | Y | C | V | I | D | P | R | N | S | S | W | S | C | P | I | C | N
Template Known Secondary structure |  |  | S | T | T | T |  |  | . | B |  |  | T | T | S |  |  |  | T | T | T | T |  |  |  |  | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 57 | . | . | 60 | . | . | . |  | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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