>ss_pred
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
>ss_conf
953688989999999999998077589999983899999999875157999998888985203534442156899999999998515877799999999999997146476654065577688765304720266528888774002443436843637788201267854465623302899899988609
>batch____
MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV
>UniRef50_C9XV32(1-193:193) Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria RepID=C9XV32_CROTZ  E=5e-99 s/c=1.88 id=89% cov=101%
MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDaGPLLALTRAWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADIIPQLLDEQVEQAV
>UniRef50_Q2NX28(1-179:196) Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae RepID=Q2NX28_SODGM  E=1e-60 s/c=1.31 id=62% cov=93%
MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFSADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDgGPLLGLTRAWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD--------------
>UniRef50_A9ACW3(15-185:198) Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales RepID=A9ACW3_BURM1  E=2e-59 s/c=1.35 id=60% cov=90%
MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK---------------------
>UniRef50_Q0AI30(1-171:191) Flagellar transcriptional activator, FlhC subunit n=2 Tax=Nitrosomonas RepID=Q0AI30_NITEC  E=4e-46 s/c=1.09 id=50% cov=90%
MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYSEDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRAWTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR---------------------
>UniRef50_Q47DP0(7-179:212) Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica RCB RepID=Q47DP0_DECAR  E=2e-17 s/c=0.52 id=29% cov=69%
----------RAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGANliLRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQ---AATLPPYRISLDRAFNLVSYIDgiwlanAPALSVLTCPGCGCEFIA----------------------------------------------
>UniRef50_C1MEH2(2-166:176) Transcriptional activator n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEH2_9ENTR  E=6e-10 s/c=0.40 id=21% cov=83%
--KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSETLLNTTHKKVEATNFMSIYlRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEeaskVMIDANEAWTLARDFRAEEIRMVRCFRCDLSFISpqSCDRPRKKHICPFC--------------------------------
>UniRef50_A3GZH1(5-164:177) Transcriptional activator n=15 Tax=Gammaproteobacteria RepID=A3GZH1_VIBCH  E=8e-09 s/c=0.39 id=26% cov=73%
------LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKSRRALVEGSLLMALYVNIggDNVYKQLNIDALMKAYDAYLvarkeADLPAEIPWKKLTINEGWVLARDLRSQLASLHRC-RCGSLYLT----------------------------------------------
>UniRef50_Q8L260(12-161:163) Transcriptional activator n=1 Tax=Proteus vulgaris RepID=Q8L260_PROVU  E=2e-05 s/c=0.34 id=15% cov=56%
-----------------------------------------------------RGRLKVATSFLSMKQDTIESTNFMTIYLRIaKDPEKVSDIRDIITAFEIFQNLHqkfrPRNSSDMIIDANAAWILARDYRTEEIKMVTCTHCNNHYIS-PYDEKPKHKCPFC--------------------------------
>UniRef50_O85807(2-194:194) Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria RepID=FLHC_SERMA  E=4e-77 s/c=1.50 id=83% cov=101%
MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQaGEAPLLALTRAWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADIIPQLLDEQVKRAI
>UniRef50_B2TE01(1-165:189) Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia RepID=B2TE01_BURPP  E=3e-59 s/c=1.39 id=52% cov=86%
MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFSADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRAWTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR---------------------------
>UniRef50_Q46TH1(9-168:210) Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH1_RALEJ  E=7e-56 s/c=1.36 id=53% cov=83%
---RSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSADWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFWTLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ-------------------------------
>UniRef50_A1W669(1-182:220) Putative uncharacterized protein n=2 Tax=Acidovorax RepID=A1W669_ACISJ  E=2e-39 s/c=0.90 id=28% cov=91%
MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNSREWYHRANlvQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMY---RPPPRISFDRAFDLAAHTEglwiakAPNFRLASCSRCDSEFLdTFAGADTSARPCPFCQLLDRHARDPRLTASFAE--------------
>UniRef50_Q11ZG5(19-192:197) Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZG5_POLSJ  E=3e-36 s/c=0.88 id=21% cov=89%
----------EQITSIRELVSFRARPATIAQLVPHQYAEMaARRIYETSDLRPPGGTQPSCKQVVLMYRSLTYRSNLNALYTQFSDL-RCAGVafeSALVVVYRLYRRKAGFGiDEKQLISFDHWYVVALEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR----------
>UniRef50_C6BQC6(1-172:185) Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia pickettii 12D RepID=C6BQC6_RALP1  E=3e-31 s/c=0.79 id=30% cov=72%
------------------LCEFGARPKTMQALLTPHGGVHIATFREiftqLTGRTPKPGMSPSPDfgSFFQKPNRRFDCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTPP-EKSMEFSFERALMLARAFDSGELRLTECECCSSN---HVHERNEPVMCPVC--------------------------------
>UniRef50_B2UCN2(221-390:393) Putative uncharacterized protein n=3 Tax=Ralstonia RepID=B2UCN2_RALPJ  E=1e-27 s/c=0.73 id=27% cov=66%
------------------------------------------LYRQIHGESSPCGLMPSSSSWYVeSVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLARSVSTGSdLSMSSCRTCSTHYLtcntTPKIELAASFYCPSCtgaLTAPRKGKPRK---------------------
>UniRef50_C4NV70(15-180:183) Putative uncharacterized protein n=13 Tax=Gammaproteobacteria RepID=C4NV70_ECOLX  E=1e-11 s/c=0.43 id=23% cov=53%
----------------------------------------------------------------------IQASLLMQLYFNIggEAVLRSVNIKALNKAFRMYhaiRKEVPgmKGARWAPFDITDAWCLASELRSGDAMLEVCDNCKCTYFTSVNQ-RTCVECPFCKEQGRHGGGEK---------------------
>UniRef50_Q5NV35(237-391:392) Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=Q5NV35_RALME  E=2e-11 s/c=0.46 id=20% cov=59%
-------------------------------------------YRRIHGRSSPSGQPPSSLTWFIeTPPRRVQSTFQMWLFRSAIARE-VSTPESFVAAIDINRT---FFADDCKVPPERSMHLARSMAmSEELAVWPCRKCGTPYLASnssdKIELLHSFTCPCC--------------------------------
>UniRef50_D2TXU7(7-168:173) Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TXU7_9ENTR  E=3e-11 s/c=0.44 id=22% cov=77%
--------------LAVEMIKLGFRKAIILSEIPsLSSSAFDCLKNEAglsgNGYDEKRlRRLKKVNRVFVDDNLKKHGSLFLYVYLIMaSNPKNKMNIEELVSAYSSYRELYNVhcnsyndTLKSEMIDANMAWQIATAYRSDVIDLVGCFYCRNKymYLTCNADTVCNMKCAFC--------------------------------
>UniRef50_B7XGS9(196-342:344) Putative uncharacterized protein n=2 Tax=Pseudomonas RepID=B7XGS9_PSEPU  E=5e-07 s/c=0.38 id=20% cov=64%
---------------ATELLQQKLQPKLVAQWTGLNADEVVRmkrsLLRDIPLVQSQSGRiqAPNKT----LAESPLHSLLYLTIYRLLaDNPLRRTNARAVVAAHREYVELCRAVGIEAsdMISPSNGYQLSNAMKTGDITLTPCSKC----------------------------------------------------
>UniRef50_A1VVD0(14-180:180) Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VVD0_POLNA  E=2e-06 s/c=0.33 id=20% cov=27%
---------------AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYL-------------------------------------------------------------------------------------------------------------------------------
>UniRef50_Q9X9F3(1-194:194) Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria RepID=FLHC_XENNE  E=1e-67 s/c=1.32 id=78% cov=101%
MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPgnNGDAPILALTRAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPADTNSQLLDGFAQKAM
>UniRef50_Q1LMQ4(3-190:213) Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ4_RALME  E=6e-59 s/c=1.21 id=47% cov=98%
-TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSPEWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPfVVPEDLQQTI----
>UniRef50_Q0K2R3(27-200:203) Flagellar transcriptional activator n=3 Tax=Burkholderiales RepID=Q0K2R3_RALEH  E=3e-55 s/c=1.24 id=51% cov=91%
---KSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTDWFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWTLVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA----------------
>UniRef50_A9ARR3(225-399:401) Putative uncharacterized protein n=6 Tax=cellular organisms RepID=A9ARR3_BURM1  E=5e-35 s/c=0.85 id=21% cov=82%
---------------ASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVeTPTNRLHGTIFTWLYRA-ALAAGANAPQALIATNDVYQQIFGGQH---AISVDRGCNLTRAMAADnRLTIAPCRSCRTEYLVSnnetKIEMHHSFDCPACtgqLGPKRRGTKARARNDA----------------
>UniRef50_A1WPA9(6-178:183) Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WPA9_VEREI  E=8e-23 s/c=0.62 id=24% cov=64%
-----------------------ARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLkSPLRRMHGALILQLYARAQKAMPPHA--AFTHAYYHYARLTAglaprstwqgdpafrQSEDDYVIPFLRAHFLTLLYTDETlsdgqrkcnLQTRRCKSCGTLYLGH---------------------------------------------
