BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (192 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   277   1e-73
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   273   2e-72
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   270   2e-71
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   266   3e-70
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   243   2e-63
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   228   6e-59
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   226   4e-58
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   221   7e-57
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   221   1e-56
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   213   4e-54
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   205   8e-52
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...   158   1e-37
UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp...   147   3e-34
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...   141   1e-32
UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...   140   2e-32
UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar...   136   4e-31
UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula...   134   1e-30
UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap...   134   2e-30
UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston...   133   2e-30
UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom...   132   5e-30
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...   130   3e-29
UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop...   124   2e-27
UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom...   121   1e-26
UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine...   114   2e-24
UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav...    72   8e-12
UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom...    52   9e-06
UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polarom...    44   0.002
UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole geno...    40   0.033

>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  277 bits (708), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  273 bits (698), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  270 bits (691), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 160/193 (82%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQA-EEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCPQ   E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  266 bits (680), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP     + P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLDEQRVQAV 192
              QLLD    +A+
Sbjct: 181 TNSQLLDGFAQKAM 194


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  243 bits (621), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  228 bits (582), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDEQR 188
           P+ L +  
Sbjct: 183 PEDLQQTI 190


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  226 bits (575), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  221 bits (564), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  221 bits (562), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
            KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTD
Sbjct: 27  GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122
           WF++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWT
Sbjct: 87  WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176
           LVRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK +   
Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  213 bits (541), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  205 bits (521), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
             +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS 
Sbjct: 9   PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           DWF+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR W
Sbjct: 69  DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score =  158 bits (399), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMYR---PPPRISFD 115

Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171
           RA+ L    E      +   +L+SC+ C   F+ T A     +  C  CQ   R  +  +
Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175

Query: 172 LSQNPAD 178
           L+ + A+
Sbjct: 176 LTASFAE 182


>UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MEH2_9ENTR
          Length = 176

 Score =  147 bits (370), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
           + ++V++     L  +++ LG R +++      S   +  L KE   S    G L  S  
Sbjct: 2   KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117
              T  + V A+ F + +    K    +  +  V+ A+ +Y E      P+     ++  
Sbjct: 62  LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160
             AWTL R   +  +++  C  C  +FI+     +P     C  C
Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score =  141 bits (356), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + ++     A  LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +
Sbjct: 5   LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64

Query: 67  WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGP-----LLALTR 119
               V  S+    +  +    +     +DA++KAY  YL    +A+         L +  
Sbjct: 65  RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
            W L R + S L  L  C  CG  ++T + Q +    C +C+
Sbjct: 125 GWVLARDLRSQLASLHRC-RCGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score =  140 bits (354), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 8   QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67
           +  R +QLA +L  LGARL+ +   T +   ++  L+        P+G  P S +W+   
Sbjct: 7   RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65

Query: 68  E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
                  A +    +  L   GL  G +A++ AYR Y            ++L RA+ LV 
Sbjct: 66  NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176
           +++      +  L + +C  CG  FI            C  C+   R     ++  + 
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179


>UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris
           RepID=Q8L260_PROVU
          Length = 163

 Score =  136 bits (342), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHAS 74
           L   ++ LG R  ++ +    +   +  L +        +G L  +T +    +  + ++
Sbjct: 12  LLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSMKQDTIEST 71

Query: 75  MFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAWTLVRFVES 129
            F   +  + K     + +  +I A+ ++        P+     ++    AW L R   +
Sbjct: 72  NFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAWILARDYRT 131

Query: 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
             +++ +C  C  ++I   +       C  C 
Sbjct: 132 EEIKMVTCTHCNNHYI-SPYDEKPKHKCPFCD 162


>UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms
           RepID=A9ARR3_BURM1
          Length = 401

 Score =  134 bits (338), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           +   R+   A  L+  G R     S  +L++  + + + E+ G+  P G  P S  WF+ 
Sbjct: 225 LPRDRNETYASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVE 284

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           T    +H ++F   ++  L  G      A+I    +Y +          +++ R   L R
Sbjct: 285 TPTNRLHGTIFTWLYRAALAAGANA-PQALIATNDVYQQIFGGQH---AISVDRGCNLTR 340

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170
            + +   L ++ C  C   ++   ++       SF C  C     P  R  K R
Sbjct: 341 AMAADNRLTIAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394


>UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria
           RepID=C4NV70_ECOLX
          Length = 183

 Score =  134 bits (337), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQNV 71
           A  +   G   +++  ET L+  ++ +LY++L   G    +    F        +    +
Sbjct: 15  ARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSKI 74

Query: 72  HASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWTL 123
            AS+    +  +    +     + A+ KA+R+Y     +   G          +T AW L
Sbjct: 75  QASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWCL 133

Query: 124 VRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
              + SG   L  C+ C   + T  +Q      C  C+   R     K
Sbjct: 134 ASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180


>UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia
           RepID=B2UCN2_RALPJ
          Length = 393

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           V  A+  +    LI L  R   + S    +      LY+++ G   P G++P S+ W++ 
Sbjct: 221 VGRAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVE 280

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           +    + ++     +   L     N  +A I A            +   L   RA+ L R
Sbjct: 281 SVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLAR 336

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ---PPSRAVKRRK 171
            V +G  L +SSC  C  +++T    P      SF C  C       R  K RK
Sbjct: 337 SVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390


>UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q11ZG5_POLSJ
          Length = 197

 Score =  132 bits (333), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68
             I    EL++  AR   +          +   ++Y E     PP G  P      + + 
Sbjct: 19  EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77

Query: 69  QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124
              + S     +        C GV    A++  YRLY  +     +E  L++    + + 
Sbjct: 78  SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136

Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182
             +E+   +L  C  CG   +   H  V S  C  C   + A   RK +     ++P+
Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score =  130 bits (327), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGM 56
           M    +       +    L   GAR + +++      G  I  ++E    L G  P  GM
Sbjct: 1   MKNTQLRFYIEHERRLKRLCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGM 60

Query: 57  LPFST--DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL 114
            P      +F    +    S+  +++  L   G  + VDA+I+AY  + E  P  E+   
Sbjct: 61  SPSPDFGSFFQKPNRRFDCSLILHSYNKLCYLG-AHHVDALIEAYAFFRESTP-PEKSME 118

Query: 115 LALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            +  RA  L R  +SG L+L+ C CC  N +   ++PV    C +C   +    R++
Sbjct: 119 FSFERALMLARAFDSGELRLTECECCSSNHVHERNEPV---MCPVCNNGNFGGSRKR 172


>UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
           RepID=D2TXU7_9ENTR
          Length = 173

 Score =  124 bits (310), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG-------MLPFSTDWFMTW 67
           LA+E+I LG R  ++ SE            K   G     G        L      F+  
Sbjct: 7   LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS-GNGYDEKRLRRLKKVNRVFVDD 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LALTR 119
               H S+F   +  +         ++ ++ AY  Y E     C    +      +    
Sbjct: 66  NLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDANM 125

Query: 120 AWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160
           AW +     S ++ L  C  C     ++T     V +  C+ C
Sbjct: 126 AWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168


>UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas
           naphthalenivorans CJ2 RepID=A1VVD0_POLNA
          Length = 180

 Score =  121 bits (304), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A+ +  + AR  ++     L++     ++K+      P G  P + DW++ T ++    +
Sbjct: 14  AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118
           +F   +Q            A+   Y  +        +GP                 L  +
Sbjct: 74  LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131

Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
           RA+ L+    +          L +  C  C G ++    +  G   C LC
Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179


>UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae
           EF01-2 RepID=A1WPA9_VEREI
          Length = 183

 Score =  114 bits (284), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 9   EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
           + +  + A  +  + AR  ++   T LS     K++ +  G   P G  P    WF+ + 
Sbjct: 6   DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112
            + +H ++    +    K        A   AY  Y                    Q+E+ 
Sbjct: 66  LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123

Query: 113 PLLALTRA-WTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
            ++   RA +  + + +  L        LQ   C  CG  ++ H  +   S  C +C
Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEV--SSKCPIC 178


>UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus
           RepID=Q5NV35_RALME
          Length = 392

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 22  LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80
            G R + + S    S       Y+ + G   P G  P S  WF+ T  + V ++     +
Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296

Query: 81  QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139
           +  +     +  ++ + A  +         +   +   R+  L R +  S  L +  C  
Sbjct: 297 RSAIARE-VSTPESFVAAIDI---NRTFFADDCKVPPERSMHLARSMAMSEELAVWPCRK 352

Query: 140 CGGNFITHAH----QPVGSFACSLC---QPPSRAVKRRK 171
           CG  ++        + + SF C  C      +R   RR+
Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391


>UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas
           RepID=B7XGS9_PSEPU
          Length = 344

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKGM--LPFSTDWFMTWEQ 69
           A EL+    + +++   T L+   +++    L +++       G    P  T      E 
Sbjct: 196 ATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAES 251

Query: 70  NVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVRF 126
            +H+ ++   ++ L           AV+ A+R Y+E C         +++ +  + L   
Sbjct: 252 PLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSNA 311

Query: 127 VESGLLQLSSCNCCG 141
           +++G + L+ C+ C 
Sbjct: 312 MKTGDITLTPCSKCK 326


>UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q120F9_POLSJ
          Length = 237

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 13/174 (7%)

Query: 6   IVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
           +++  +  QL  +L     R Q +++       RL ++  E+   P   G    +  +  
Sbjct: 39  LIRLTQRTQLIKDLTGTDIRPQRIKAAI---DKRLEEMGVEI-QRPRGSGQTYTAKGFLS 94

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVD-----AVIKAYRLYLEQCP---QAEEGPLLAL 117
                  A+            G     D     A+ K    YL  C    + +E   ++ 
Sbjct: 95  KMADKYDAAYLLGLHFGANGPGSLATFDTNLGTALDKRMETYLRYCSDMYERQEDASISF 154

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
                L+  +++  + + +C  C  +++      V   +C +C      VK  K
Sbjct: 155 ETYIVLIEGIKNHEVPMHTCKDCSTSYVWPVGSYV-RHSCPVCAVHQHDVKAAK 207


>UniRef50_A0BXR5 Chromosome undetermined scaffold_135, whole genome shotgun sequence
           n=2 Tax=Paramecium tetraurelia RepID=A0BXR5_PARTE
          Length = 496

 Score = 40.5 bits (93), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 132 LQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQL 183
           L   SC+ C  +F    HQ   S  C LC   +R V+ RK       ++ QL
Sbjct: 50  LDPISCDSCMNHFCKRCHQQKQSMKCPLC---NRQVETRKAFPLLRQLLSQL 98


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   268   8e-71
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   264   1e-69
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   263   2e-69
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   257   1e-67
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   240   2e-62
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   224   2e-57
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   218   1e-55
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   217   2e-55
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   215   8e-55
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   207   1e-52
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   199   6e-50
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...   152   6e-36
UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp...   146   6e-34
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...   144   2e-33
UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston...   144   2e-33
UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula...   144   2e-33
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...   139   5e-32
UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar...   137   2e-31
UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...   135   5e-31
UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap...   131   1e-29
UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom...   129   4e-29
UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop...   125   1e-27
UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom...   119   5e-26
UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine...   117   2e-25
UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav...   113   3e-24
UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom...    96   8e-19

Sequences not found previously or not previously below threshold:

UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polarom...    46   7e-04
UniRef50_D1VAH5 DNA glycosylase n=1 Tax=Frankia sp. EuI1c RepID=...    40   0.053

>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  268 bits (685), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  264 bits (675), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  263 bits (672), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 160/193 (82%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQA-EEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCPQ   E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  257 bits (657), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP     + P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLDEQRVQAV 192
              QLLD    +A+
Sbjct: 181 TNSQLLDGFAQKAM 194


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  240 bits (613), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  224 bits (570), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDEQR 188
           P+ L +  
Sbjct: 183 PEDLQQTI 190


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  218 bits (554), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  217 bits (552), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  215 bits (547), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
            KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTD
Sbjct: 27  GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122
           WF++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWT
Sbjct: 87  WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176
           LVRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK +   
Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  207 bits (527), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  199 bits (505), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
             +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS 
Sbjct: 9   PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           DWF+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR W
Sbjct: 69  DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score =  152 bits (383), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMYR---PPPRISFD 115

Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171
           RA+ L    E      +   +L+SC+ C   F+ T A     +  C  CQ   R  +  +
Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175

Query: 172 LSQNPAD 178
           L+ + A+
Sbjct: 176 LTASFAE 182


>UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MEH2_9ENTR
          Length = 176

 Score =  146 bits (367), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
           + ++V++     L  +++ LG R +++      S   +  L KE   S    G L  S  
Sbjct: 2   KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117
              T  + V A+ F + +    K    +  +  V+ A+ +Y E      P+     ++  
Sbjct: 62  LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160
             AWTL R   +  +++  C  C  +FI+     +P     C  C
Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score =  144 bits (362), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGM 56
           M    +       +    L   GAR + +++      G  I  ++E    L G  P  GM
Sbjct: 1   MKNTQLRFYIEHERRLKRLCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGM 60

Query: 57  LPFST--DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL 114
            P      +F    +    S+  +++  L   G  + VDA+I+AY  + E  P  E+   
Sbjct: 61  SPSPDFGSFFQKPNRRFDCSLILHSYNKLCYLGA-HHVDALIEAYAFFRESTP-PEKSME 118

Query: 115 LALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            +  RA  L R  +SG L+L+ C CC  N +   ++PV    C +C   +    R++
Sbjct: 119 FSFERALMLARAFDSGELRLTECECCSSNHVHERNEPV---MCPVCNNGNFGGSRKR 172


>UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia
           RepID=B2UCN2_RALPJ
          Length = 393

 Score =  144 bits (362), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           V  A+  +    LI L  R   + S    +      LY+++ G   P G++P S+ W++ 
Sbjct: 221 VGRAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVE 280

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           +    + ++     +   L     N  +A I A            +   L   RA+ L R
Sbjct: 281 SVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLAR 336

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ---PPSRAVKRRK 171
            V +G  L +SSC  C  +++T    P      SF C  C       R  K RK
Sbjct: 337 SVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390


>UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms
           RepID=A9ARR3_BURM1
          Length = 401

 Score =  144 bits (362), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           +   R+   A  L+  G R     S  +L++  + + + E+ G+  P G  P S  WF+ 
Sbjct: 225 LPRDRNETYASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVE 284

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           T    +H ++F   ++  L     N   A+I    +Y +          +++ R   L R
Sbjct: 285 TPTNRLHGTIFTWLYRAALAA-GANAPQALIATNDVYQQIFGGQH---AISVDRGCNLTR 340

Query: 126 FVESGL-LQLSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170
            + +   L ++ C  C   ++   ++       SF C  C     P  R  K R
Sbjct: 341 AMAADNRLTIAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score =  139 bits (350), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + ++     A  LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +
Sbjct: 5   LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64

Query: 67  WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPLLA-----LTR 119
               V  S+    +  +    +     +DA++KAY  YL    +A+    +      +  
Sbjct: 65  RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
            W L R + S L  L  C  CG  ++T + Q +    C +C+
Sbjct: 125 GWVLARDLRSQLASLHRCR-CGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris
           RepID=Q8L260_PROVU
          Length = 163

 Score =  137 bits (345), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + +     L   ++ LG R  ++ +    +   +  L +        +G L  +T +   
Sbjct: 4   IPKDEVDYLLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSM 63

Query: 67  WEQNVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAW 121
            +  + ++ F   +  + K     + +  +I A+ ++        P+     ++    AW
Sbjct: 64  KQDTIESTNFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAW 123

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162
            L R   +  +++ +C  C  ++I   +       C  C  
Sbjct: 124 ILARDYRTEEIKMVTCTHCNNHYI-SPYDEKPKHKCPFCDN 163


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score =  135 bits (341), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 8   QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67
           +  R +QLA +L  LGARL+ +   T +   ++  L+        P+G  P S +W+   
Sbjct: 7   RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65

Query: 68  E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
                  A +    +  L   GL  G +A++ AYR Y            ++L RA+ LV 
Sbjct: 66  NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176
           +++      +  L + +C  CG  FI            C  C+   R     ++  + 
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179


>UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria
           RepID=C4NV70_ECOLX
          Length = 183

 Score =  131 bits (330), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQN 70
            A  +   G   +++  ET L+  ++ +LY++L   G    +    F        +    
Sbjct: 14  TARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSK 73

Query: 71  VHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWT 122
           + AS+    +  +    +     + A+ KA+R+Y     +   G          +T AW 
Sbjct: 74  IQASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWC 132

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           L   + SG   L  C+ C   + T  +Q      C  C+   R     K
Sbjct: 133 LASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180


>UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q11ZG5_POLSJ
          Length = 197

 Score =  129 bits (325), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68
             I    EL++  AR   +          +   ++Y E     PP G  P      + + 
Sbjct: 19  EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77

Query: 69  QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124
              + S     +        C GV    A++  YRLY  +     +E  L++    + + 
Sbjct: 78  SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136

Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182
             +E+   +L  C  CG   +   H  V S  C  C   + A   RK +     ++P+
Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192


>UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
           RepID=D2TXU7_9ENTR
          Length = 173

 Score =  125 bits (313), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG-------MLPFSTDWFMTW 67
           LA+E+I LG R  ++ SE            K   G     G        L      F+  
Sbjct: 7   LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS-GNGYDEKRLRRLKKVNRVFVDD 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LALTR 119
               H S+F   +  +         ++ ++ AY  Y E     C    +      +    
Sbjct: 66  NLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDANM 125

Query: 120 AWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160
           AW +     S ++ L  C  C     ++T     V +  C+ C
Sbjct: 126 AWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168


>UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas
           naphthalenivorans CJ2 RepID=A1VVD0_POLNA
          Length = 180

 Score =  119 bits (298), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A+ +  + AR  ++     L++     ++K+      P G  P + DW++ T ++    +
Sbjct: 14  AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118
           +F   +Q            A+   Y  +        +GP                 L  +
Sbjct: 74  LFILMYQK--ALTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131

Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
           RA+ L+    +          L +  C  C G ++    +  G   C LC
Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179


>UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae
           EF01-2 RepID=A1WPA9_VEREI
          Length = 183

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 9   EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
           + +  + A  +  + AR  ++   T LS     K++ +  G   P G  P    WF+ + 
Sbjct: 6   DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112
            + +H ++    +    K        A   AY  Y                    Q+E+ 
Sbjct: 66  LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123

Query: 113 PLLALTRAWTLVRFVESG---------LLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
            ++   RA  L                 LQ   C  CG  ++ H  +   S  C +C
Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEV--SSKCPIC 178


>UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus
           RepID=Q5NV35_RALME
          Length = 392

 Score =  113 bits (283), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 22  LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80
            G R + + S    S       Y+ + G   P G  P S  WF+ T  + V ++     +
Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296

Query: 81  QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139
           +  +     +  ++ + A  +         +   +   R+  L R +  S  L +  C  
Sbjct: 297 RSAIARE-VSTPESFVAAIDI---NRTFFADDCKVPPERSMHLARSMAMSEELAVWPCRK 352

Query: 140 CGGNFITHAH----QPVGSFACSLCQ---PPSRAVKRRK 171
           CG  ++        + + SF C  C      +R   RR+
Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391


>UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas
           RepID=B7XGS9_PSEPU
          Length = 344

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKGM--LPFSTDWFMTWEQ 69
           A EL+    + +++   T L+   +++    L +++       G    P  T      E 
Sbjct: 196 ATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAES 251

Query: 70  NVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVRF 126
            +H+ ++   ++ L           AV+ A+R Y+E C         +++ +  + L   
Sbjct: 252 PLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSNA 311

Query: 127 VESGLLQLSSCNCCG 141
           +++G + L+ C+ C 
Sbjct: 312 MKTGDITLTPCSKCK 326


>UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q120F9_POLSJ
          Length = 237

 Score = 45.9 bits (107), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 18/170 (10%)

Query: 19  LITLGARLQMLESETQLSRG-----RLIKLYKELRG----SPPPKGMLPFSTDWFMTWEQ 69
           LI L  R Q+++  T            I    E  G     P   G    +  +      
Sbjct: 39  LIRLTQRTQLIKDLTGTDIRPQRIKAAIDKRLEEMGVEIQRPRGSGQTYTAKGFLSKMAD 98

Query: 70  NVHASMFCNAWQFLLKTGLCNGVD-----AVIKAYRLYLEQCP---QAEEGPLLALTRAW 121
              A+            G     D     A+ K    YL  C    + +E   ++     
Sbjct: 99  KYDAAYLLGLHFGANGPGSLATFDTNLGTALDKRMETYLRYCSDMYERQEDASISFETYI 158

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            L+  +++  + + +C  C  +++      V   +C +C      VK  K
Sbjct: 159 VLIEGIKNHEVPMHTCKDCSTSYVWPVGSYV-RHSCPVCAVHQHDVKAAK 207


>UniRef50_D1VAH5 DNA glycosylase n=1 Tax=Frankia sp. EuI1c RepID=D1VAH5_9ACTO
          Length = 304

 Score = 39.7 bits (91), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%)

Query: 83  LLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGG 142
           L    +    +A++   R  +E          L   +   L     +G      C  CG 
Sbjct: 215 LSGDQVAALHEALVGTLRAAVEAAGGLG-AADLKAEKKANLAVHARTGEA----CPRCGD 269

Query: 143 NFITHAHQPVGSFACSLCQPPSRAVKRRKLSQ 174
                +        C  CQ   R +  R+LS+
Sbjct: 270 TVRQVSFADRSLQYCPTCQTGGRLLADRRLSR 301


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_O52222 Flagellar transcriptional activator flhC n=129 T...   271   1e-71
UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Ta...   267   1e-70
UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Ta...   265   5e-70
UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Ta...   259   3e-68
UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Ta...   241   1e-62
UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax...   226   3e-58
UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax...   220   2e-56
UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subuni...   218   1e-55
UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burk...   217   2e-55
UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax...   207   1e-52
UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Rals...   201   1e-50
UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovo...   152   5e-36
UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax...   146   5e-34
UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellula...   146   5e-34
UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp...   145   6e-34
UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralston...   145   9e-34
UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgar...   144   2e-33
UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteoba...   142   4e-33
UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechlor...   136   5e-31
UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammap...   132   7e-30
UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polarom...   130   2e-29
UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Vermine...   125   6e-28
UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenop...   125   9e-28
UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polarom...   120   3e-26
UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriav...   115   8e-25
UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polarom...   115   1e-24
UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudom...    96   7e-19

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_O52222 Flagellar transcriptional activator flhC n=129 Tax=Proteobacteria
           RepID=FLHC_SALTY
          Length = 192

 Score =  271 bits (692), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 180/192 (93%), Positives = 186/192 (96%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           MSEKSIVQEARDIQLAMELI LGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTWEQN+HASMFCNAWQFLLKTGLC+GVDAVIKAYRLYLEQCPQ  EGPLLALTRA
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYRLYLEQCPQPPEGPLLALTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADII 180
           WTLVRFVESGLL+LSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLS++ ADII
Sbjct: 121 WTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADII 180

Query: 181 PQLLDEQRVQAV 192
           PQLLDEQ  QAV
Sbjct: 181 PQLLDEQIEQAV 192


>UniRef50_C9XV32 Flagellar transcriptional activator flhC n=10 Tax=Proteobacteria
           RepID=C9XV32_CROTZ
          Length = 193

 Score =  267 bits (682), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 172/193 (89%), Positives = 185/193 (95%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M++KSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 1   MTDKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
           TDWFMTWEQN+HASMFCNAWQ+LL+TGLC+GVDAVIKAYRLYLEQCPQ  + GPLLALTR
Sbjct: 61  TDWFMTWEQNIHASMFCNAWQYLLRTGLCSGVDAVIKAYRLYLEQCPQENDAGPLLALTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+L+LS CN CGGNF+THAHQPVGSFACSLCQPPSRAVKRRKLS++ ADI
Sbjct: 121 AWTLVRFVDSGMLELSRCNSCGGNFVTHAHQPVGSFACSLCQPPSRAVKRRKLSRDAADI 180

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  QAV
Sbjct: 181 IPQLLDEQVEQAV 193


>UniRef50_O85807 Flagellar transcriptional activator flhC n=47 Tax=Proteobacteria
           RepID=FLHC_SERMA
          Length = 194

 Score =  265 bits (678), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 160/193 (82%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELI+LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
Sbjct: 2   MVEKSIVQEAKDIQLAMELISLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 61

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQA-EEGPLLALTR 119
           TDWFMTWEQN+H+SMF NA+ FL+K+G C+GV+AVIKAYRLYLEQCPQ   E PLLALTR
Sbjct: 62  TDWFMTWEQNIHSSMFYNAYLFLMKSGQCSGVEAVIKAYRLYLEQCPQQAGEAPLLALTR 121

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADI 179
           AWTLVRFV+SG+LQLS+C+CCGG FITHAHQP+  F CSLCQPPSRAVKRRKLS   ADI
Sbjct: 122 AWTLVRFVDSGMLQLSACSCCGGAFITHAHQPLNGFICSLCQPPSRAVKRRKLSPQLADI 181

Query: 180 IPQLLDEQRVQAV 192
           IPQLLDEQ  +A+
Sbjct: 182 IPQLLDEQVKRAI 194


>UniRef50_Q9X9F3 Flagellar transcriptional activator flhC n=74 Tax=Proteobacteria
           RepID=FLHC_XENNE
          Length = 194

 Score =  259 bits (662), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 151/194 (77%), Positives = 168/194 (86%), Gaps = 2/194 (1%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M EKSIVQEA+DIQLAMELITLGARLQMLESETQLSRGRLI+LYKELRGSPPPKGMLPFS
Sbjct: 1   MVEKSIVQEAKDIQLAMELITLGARLQMLESETQLSRGRLIRLYKELRGSPPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQ--AEEGPLLALT 118
           TDWFMTWEQN+H+SMF NA++FLLK+G C GV+ V+KAYRLYLEQCP     + P+LALT
Sbjct: 61  TDWFMTWEQNIHSSMFYNAYRFLLKSGHCEGVEVVVKAYRLYLEQCPPGNNGDAPILALT 120

Query: 119 RAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           RAWTLVRFV+SG+LQ + C CCGG FITHAHQPV SF CSLCQPPSRAVK+RKLS  PAD
Sbjct: 121 RAWTLVRFVDSGMLQPTECRCCGGTFITHAHQPVNSFVCSLCQPPSRAVKKRKLSPQPAD 180

Query: 179 IIPQLLDEQRVQAV 192
              QLLD    +A+
Sbjct: 181 TNSQLLDGFAQKAM 194


>UniRef50_A9ACW3 Flagellar transcriptional activator FlhC n=26 Tax=Burkholderiales
           RepID=A9ACW3_BURM1
          Length = 198

 Score =  241 bits (614), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 104/171 (60%), Positives = 131/171 (76%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M+ KS+V E ++I LA+ELI LGARLQ+LE+ET LSR RLIKLYKEL+G  PPKGMLPFS
Sbjct: 15  MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS 74

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
           TDWFMTW+ N+H+S+F N ++F+   G C  + A++KAYRLYLE    + +   L+LTRA
Sbjct: 75  TDWFMTWQPNIHSSLFYNIYRFMQDHGRCEPIHAIVKAYRLYLEHVSLSGDEAALSLTRA 134

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRF +SG+LQ++ C  CGG+F+ HAH P   F C LCQPPSRA K RK
Sbjct: 135 WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPQQGFVCGLCQPPSRAGKTRK 185


>UniRef50_Q1LMQ4 Flagellar transcriptional activator FlhC n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LMQ4_RALME
          Length = 213

 Score =  226 bits (576), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/188 (46%), Positives = 128/188 (68%), Gaps = 1/188 (0%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
           + KS+++E  + +LA+EL+ LGARLQ+LESE  +SR RL +LYKELRG  PPKG LP S 
Sbjct: 3   TRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSP 62

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           +WF+TW  NVHAS+F +A++FL+  G  + +  ++ AYRLY+E      E   L+ TRAW
Sbjct: 63  EWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAW 122

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD-II 180
           T++RF++SG L  S+C CCGG+F+ H +    +F C LC PP RA K +KL+ +    ++
Sbjct: 123 TMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPFVV 182

Query: 181 PQLLDEQR 188
           P+ L +  
Sbjct: 183 PEDLQQTI 190


>UniRef50_Q2NX28 Flagellar transcriptional activator FlhC n=3 Tax=Enterobacteriaceae
           RepID=Q2NX28_SODGM
          Length = 196

 Score =  220 bits (560), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/179 (62%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+QE+RDIQLAMELI LGARL +LE+ET LSR RL++LYKE++G+P PKG+LPFS
Sbjct: 1   MYRKSIMQESRDIQLAMELIALGARLPILENETCLSRSRLLRLYKEVKGTPAPKGLLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEE-GPLLALTR 119
            DWF++WEQN+H+S F NA+  L++ G    ++A+IKAYRLYLE CPQ ++ GPLL LTR
Sbjct: 61  ADWFLSWEQNIHSSAFYNAYLCLIRVGNIPTIEAMIKAYRLYLELCPQRQDGGPLLGLTR 120

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPAD 178
           AW L+RF++S LL  + C  CGG FIT+A  P  +F CS C PPSRAVK+RKLS   AD
Sbjct: 121 AWILLRFIDSQLLGQTRCKLCGGAFITYAFHPPHNFVCSFCHPPSRAVKKRKLSHAAAD 179


>UniRef50_Q0AI30 Flagellar transcriptional activator, FlhC subunit n=2
           Tax=Nitrosomonas RepID=Q0AI30_NITEC
          Length = 191

 Score =  218 bits (554), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M  KSI+ E + IQLA EL+ LGARLQ+LE  T LSR RL+KLYKE++G  PPKGMLP+S
Sbjct: 1   MKVKSILSEGKQIQLATELVRLGARLQVLEVSTTLSRERLVKLYKEVKGVSPPKGMLPYS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DWF  W+ N+H+S+F N + ++ +      +DA+IK+Y+LYLE         +L+ TRA
Sbjct: 61  EDWFTGWQPNMHSSLFINIYNYITQYTNVRDIDAIIKSYQLYLEHIEVNHLQCILSFTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           WTLVRFVES +L ++SC  C GNF+ H+     +  C LC  PSRA K ++
Sbjct: 121 WTLVRFVESKVLSVTSCVKCTGNFLVHSLDIQSNHVCGLCHVPSRAGKTKR 171


>UniRef50_Q0K2R3 Flagellar transcriptional activator n=3 Tax=Burkholderiales
           RepID=Q0K2R3_RALEH
          Length = 203

 Score =  217 bits (552), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 115/174 (66%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
            KS++Q+   I+LA+E+I LGARLQ+LESE  L R RLI+LYKEL G  PPKGMLPFSTD
Sbjct: 27  GKSMLQDVEQIRLAIEMIGLGARLQVLESEVSLPRVRLIRLYKELCGVSPPKGMLPFSTD 86

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWT 122
           WF++W  N HASM   A++F+   G  +G+ AV+ +YR+Y EQ     E   L+ TRAWT
Sbjct: 87  WFVSWRPNAHASMLLGAYRFMTSRGSLDGIRAVLSSYRMYREQLCATGEASQLSFTRAWT 146

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNP 176
           LVRF E G+L+L+ C  C G ++  A      + C LC PP+RA K RK +   
Sbjct: 147 LVRFYERGMLRLARCRDCRGEYVVQADDARHRYVCGLCLPPARAGKGRKPAPAA 200


>UniRef50_B2TE01 Flagellar transcriptional activator FlhC n=7 Tax=Burkholderia
           RepID=B2TE01_BURPP
          Length = 189

 Score =  207 bits (527), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M ++S+ ++A+++  A+ LI LGAR+Q+LESE  LSR R+I+LY+E++G  PPKGMLPFS
Sbjct: 1   MLKRSLTEDAQEVFRAIALIELGARMQVLESELTLSRDRMIRLYREVKGVSPPKGMLPFS 60

Query: 61  TDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRA 120
            DW+MTW  N+HAS+F N + FL     C+ +DA+ K YRLYLE C  +E  P+L LTRA
Sbjct: 61  ADWYMTWLANIHASLFYNTYLFLKNEARCSHLDALTKGYRLYLEHCQHSETEPVLDLTRA 120

Query: 121 WTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165
           WTLVRF ++ +LQL+ C  C G F+ H H    +  C  CQPPSR
Sbjct: 121 WTLVRFFDADILQLTKCCRCTGKFVAHKHDLQHNVVCGACQPPSR 165


>UniRef50_Q46TH1 Flagellar transcriptional activator n=1 Tax=Ralstonia eutropha
           JMP134 RepID=Q46TH1_RALEJ
          Length = 210

 Score =  201 bits (510), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/160 (53%), Positives = 112/160 (70%)

Query: 2   SEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFST 61
             +S +Q+A D QLA+ELI LGAR Q++E+E  LSR R+ +LY+EL G  PPKGMLPFS 
Sbjct: 9   PARSALQDASDTQLAIELIGLGARPQVVEAEVTLSRSRVYRLYRELTGGSPPKGMLPFSA 68

Query: 62  DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAW 121
           DWF+TW  N HAS   +  +++ +     G+ AV+ +YR+Y E      E  L++ TR W
Sbjct: 69  DWFVTWRPNAHASYLLSVHEYMQQRAGLPGIRAVLNSYRVYAEHMKANNEECLISFTRFW 128

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
           TLVRF E GLLQLS+C CCGG F+THAH+P+ SF C+LCQ
Sbjct: 129 TLVRFCEGGLLQLSTCPCCGGRFVTHAHEPLASFICTLCQ 168


>UniRef50_A1W669 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1W669_ACISJ
          Length = 220

 Score =  152 bits (384), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS 60
           M    I Q  R +QLA +   LGAR++ +   T L    L+ L        PP G  P S
Sbjct: 1   MPGTKISQRMRALQLARDCAALGARIRTIHHLTGLRPRELLHLLFNSHAM-PPCGRAPNS 59

Query: 61  TDWFMTWE--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALT 118
            +W+      Q + AS+    ++ +   G     +A++ AYR Y          P ++  
Sbjct: 60  REWYHRANLVQRIEASIVIANFRRMRHLGF-PAPEALVGAYRYYQSMYR---PPPRISFD 115

Query: 119 RAWTLVRFVE------SGLLQLSSCNCCGGNFI-THAHQPVGSFACSLCQPPSRAVKRRK 171
           RA+ L    E      +   +L+SC+ C   F+ T A     +  C  CQ   R  +  +
Sbjct: 116 RAFDLAAHTEGLWIAKAPNFRLASCSRCDSEFLDTFAGADTSARPCPFCQLLDRHARDPR 175

Query: 172 LSQNPAD 178
           L+ + A+
Sbjct: 176 LTASFAE 182


>UniRef50_C6BQC6 Flagellar transcriptional activator FlhC n=1 Tax=Ralstonia
           pickettii 12D RepID=C6BQC6_RALP1
          Length = 185

 Score =  146 bits (367), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 1   MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKE----LRGSPPPKGM 56
           M    +       +    L   GAR + +++      G  I  ++E    L G  P  GM
Sbjct: 1   MKNTQLRFYIEHERRLKRLCEFGARPKTMQALLTPHGGVHIATFREIFTQLTGRTPKPGM 60

Query: 57  LPFST--DWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL 114
            P      +F    +    S+  +++  L   G  + VDA+I+AY  + E  P  E+   
Sbjct: 61  SPSPDFGSFFQKPNRRFDCSLILHSYNKLCYLGA-HHVDALIEAYAFFRESTP-PEKSME 118

Query: 115 LALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            +  RA  L R  +SG L+L+ C CC  N +   ++PV    C +C   +    R++
Sbjct: 119 FSFERALMLARAFDSGELRLTECECCSSNHVHERNEPV---MCPVCNNGNFGGSRKR 172


>UniRef50_A9ARR3 Putative uncharacterized protein n=6 Tax=cellular organisms
           RepID=A9ARR3_BURM1
          Length = 401

 Score =  146 bits (367), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           +   R+   A  L+  G R     S  +L++  + + + E+ G+  P G  P S  WF+ 
Sbjct: 225 LPRDRNETYASALMAYGCRASTAASLFRLNQNAMRQRFFEMHGTSSPCGNTPNSLSWFVE 284

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           T    +H ++F   ++  L     N   A+I    +Y +          +++ R   L R
Sbjct: 285 TPTNRLHGTIFTWLYRAALAA-GANAPQALIATNDVYQQIFGGQH---AISVDRGCNLTR 340

Query: 126 FVESGL-LQLSSCNCCGGNFITHAHQPV----GSFACSLCQ----PPSRAVKRR 170
            + +   L ++ C  C   ++   ++       SF C  C     P  R  K R
Sbjct: 341 AMAADNRLTIAPCRSCRTEYLVSNNETKIEMHHSFDCPACTGQLGPKRRGTKAR 394


>UniRef50_C1MEH2 Transcriptional activator n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MEH2_9ENTR
          Length = 176

 Score =  145 bits (366), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 3   EKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTD 62
           + ++V++     L  +++ LG R +++      S   +  L KE   S    G L  S  
Sbjct: 2   KAALVRDEDKFALTQKMVKLGFRRKIIVHSLNASDRVIDFLRKEFHLSDVSIGRLKHSET 61

Query: 63  WFMTWEQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLEQ----CPQAEEGPLLAL 117
              T  + V A+ F + +    K    +  +  V+ A+ +Y E      P+     ++  
Sbjct: 62  LLNTTHKKVEATNFMSIYLRRSKDPNNSDNIVDVVSAFEIYRELNLKFRPEEASKVMIDA 121

Query: 118 TRAWTLVRFVESGLLQLSSCNCCGGNFIT--HAHQPVGSFACSLC 160
             AWTL R   +  +++  C  C  +FI+     +P     C  C
Sbjct: 122 NEAWTLARDFRAEEIRMVRCFRCDLSFISPQSCDRPRKKHICPFC 166


>UniRef50_B2UCN2 Putative uncharacterized protein n=3 Tax=Ralstonia
           RepID=B2UCN2_RALPJ
          Length = 393

 Score =  145 bits (365), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM- 65
           V  A+  +    LI L  R   + S    +      LY+++ G   P G++P S+ W++ 
Sbjct: 221 VGRAQMERYTEALIGLRCRASSVASMFPGTAATARALYRQIHGESSPCGLMPSSSSWYVE 280

Query: 66  TWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
           +    + ++     +   L     N  +A I A            +   L   RA+ L R
Sbjct: 281 SVSSRIQSTTLIWLYWSALA-ARANEPEAFITALDTVGRLF---GDAARLTPDRAFHLAR 336

Query: 126 FVESG-LLQLSSCNCCGGNFITHAHQPV----GSFACSLCQ---PPSRAVKRRK 171
            V +G  L +SSC  C  +++T    P      SF C  C       R  K RK
Sbjct: 337 SVSTGSDLSMSSCRTCSTHYLTCNTTPKIELAASFYCPSCTGALTAPRKGKPRK 390


>UniRef50_Q8L260 Transcriptional activator n=1 Tax=Proteus vulgaris
           RepID=Q8L260_PROVU
          Length = 163

 Score =  144 bits (363), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 6/161 (3%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + +     L   ++ LG R  ++ +    +   +  L +        +G L  +T +   
Sbjct: 4   IPKDEVDYLLKRMVALGFRKAIITTSLNAAERLVDTLKRNCNQEDNGRGRLKVATSFLSM 63

Query: 67  WEQNVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQ----CPQAEEGPLLALTRAW 121
            +  + ++ F   +  + K     + +  +I A+ ++        P+     ++    AW
Sbjct: 64  KQDTIESTNFMTIYLRIAKDPEKVSDIRDIITAFEIFQNLHQKFRPRNSSDMIIDANAAW 123

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP 162
            L R   +  +++ +C  C  ++I   +       C  C  
Sbjct: 124 ILARDYRTEEIKMVTCTHCNNHYI-SPYDEKPKHKCPFCDN 163


>UniRef50_A3GZH1 Transcriptional activator n=15 Tax=Gammaproteobacteria
           RepID=A3GZH1_VIBCH
          Length = 177

 Score =  142 bits (359), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 7   VQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMT 66
           + ++     A  LI  G R  ++  +T L    + +L+KE+ G  P  G LP S     +
Sbjct: 5   LSKSELFTRASLLIKYGFRTTIIALDTGLPIHIIRRLHKEVTGKSPCPGQLPESDAIVKS 64

Query: 67  WEQNVHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPLLA-----LTR 119
               V  S+    +  +    +     +DA++KAY  YL    +A+    +      +  
Sbjct: 65  RRALVEGSLLMALYVNIGGDNVYKQLNIDALMKAYDAYLVARKEADLPAEIPWKKLTINE 124

Query: 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161
            W L R + S L  L  C  CG  ++T + Q +    C +C+
Sbjct: 125 GWVLARDLRSQLASLHRCR-CGSLYLTVSQQRI-QLKCPVCE 164


>UniRef50_Q47DP0 Putative uncharacterized protein n=2 Tax=Dechloromonas aromatica
           RCB RepID=Q47DP0_DECAR
          Length = 212

 Score =  136 bits (341), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 8   QEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTW 67
           +  R +QLA +L  LGARL+ +   T +   ++  L+        P+G  P S +W+   
Sbjct: 7   RHLRAMQLAKQLAALGARLKTIHLITGIPPRQVQSLFFP-DARTIPRGRAPDSAEWYHGA 65

Query: 68  E--QNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVR 125
                  A +    +  L   GL  G +A++ AYR Y            ++L RA+ LV 
Sbjct: 66  NLILRTDACLIGARYCQLRNQGLATG-EALVFAYRAYQAATL---PPYRISLDRAFNLVS 121

Query: 126 FVE------SGLLQLSSCNCCGGNFITHAHQPVG-SFACSLCQPPSRAVKRRKLSQNP 176
           +++      +  L + +C  CG  FI            C  C+   R     ++  + 
Sbjct: 122 YIDGIWLANAPALSVLTCPGCGCEFIAAVGTVAHPGEPCPFCKLLERFHLDHRIQASY 179


>UniRef50_C4NV70 Putative uncharacterized protein n=13 Tax=Gammaproteobacteria
           RepID=C4NV70_ECOLX
          Length = 183

 Score =  132 bits (331), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELR--GSPPPKGMLPF--STDWFMTWEQN 70
            A  +   G   +++  ET L+  ++ +LY++L   G    +    F        +    
Sbjct: 14  TARHMALAGYITKIIMIETGLTYKQVRRLYQDLERDGYTLERKSRTFRGGATLIHSHTSK 73

Query: 71  VHASMFCNAWQFLLKTGLCN--GVDAVIKAYRLYLEQCPQAEEGPL------LALTRAWT 122
           + AS+    +  +    +     + A+ KA+R+Y     +   G          +T AW 
Sbjct: 74  IQASLLMQLYFNIGGEAVLRSVNIKALNKAFRMYHAIRKEV-PGMKGARWAPFDITDAWC 132

Query: 123 LVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
           L   + SG   L  C+ C   + T  +Q      C  C+   R     K
Sbjct: 133 LASELRSGDAMLEVCDNCKCTYFTSVNQRTC-VECPFCKEQGRHGGGEK 180


>UniRef50_Q11ZG5 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q11ZG5_POLSJ
          Length = 197

 Score =  130 bits (327), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 11  RDIQLAMELITLGARLQMLESETQLSRGRL--IKLYKELRGSPPPKGMLPFSTDWFMTWE 68
             I    EL++  AR   +          +   ++Y E     PP G  P      + + 
Sbjct: 19  EQITSIRELVSFRARPATIAQLVPHQYAEMAARRIY-ETSDLRPPGGTQPSCKQVVLMYR 77

Query: 69  QNVHASMFCNAWQFLLKTGLCNGV---DAVIKAYRLYLEQCPQA-EEGPLLALTRAWTLV 124
              + S     +        C GV    A++  YRLY  +     +E  L++    + + 
Sbjct: 78  SLTYRSNLNALYTQFSDL-RCAGVAFESALVVVYRLYRRKAGFGIDEKQLISFDHWYVVA 136

Query: 125 RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQ 182
             +E+   +L  C  CG   +   H  V S  C  C   + A   RK +     ++P+
Sbjct: 137 LEIETRESRLHRCGACGSRNLLTKHISVTSIDCVFCDLLATA--NRKATSKADPMVPR 192


>UniRef50_A1WPA9 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae
           EF01-2 RepID=A1WPA9_VEREI
          Length = 183

 Score =  125 bits (315), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 29/177 (16%)

Query: 9   EARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TW 67
           + +  + A  +  + AR  ++   T LS     K++ +  G   P G  P    WF+ + 
Sbjct: 6   DLQLYETAKVMAKMQARACVISRITGLSIADTRKIWHDEMGRSSPSGQQPNDDQWFLKSP 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC---------------PQAEEG 112
            + +H ++    +    K        A   AY  Y                    Q+E+ 
Sbjct: 66  LRRMHGALILQLYARAQK--AMPPHAAFTHAYYHYARLTAGLAPRSTWQGDPAFRQSEDD 123

Query: 113 PLLALTRAWTLVRFVESG---------LLQLSSCNCCGGNFITHAHQPVGSFACSLC 160
            ++   RA  L                 LQ   C  CG  ++ H  +   S  C +C
Sbjct: 124 YVIPFLRAHFLTLLYTDETLSDGQRKCNLQTRRCKSCGTLYLGHVEEV--SSKCPIC 178


>UniRef50_D2TXU7 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae
           RepID=D2TXU7_9ENTR
          Length = 173

 Score =  125 bits (313), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 15  LAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKG-------MLPFSTDWFMTW 67
           LA+E+I LG R  ++ SE            K   G     G        L      F+  
Sbjct: 7   LAVEMIKLGFRKAIILSEIPSLSSSAFDCLKNEAGLS-GNGYDEKRLRRLKKVNRVFVDD 65

Query: 68  EQNVHASMFCNAWQFLLKTGLCN-GVDAVIKAYRLYLE----QCPQAEEGPL---LALTR 119
               H S+F   +  +         ++ ++ AY  Y E     C    +      +    
Sbjct: 66  NLKKHGSLFLYVYLIMASNPKNKMNIEELVSAYSSYRELYNVHCNSYNDTLKSEMIDANM 125

Query: 120 AWTLVRFVESGLLQLSSCNCCGGN--FITHAHQPVGSFACSLC 160
           AW +     S ++ L  C  C     ++T     V +  C+ C
Sbjct: 126 AWQIATAYRSDVIDLVGCFYCRNKYMYLTCNADTVCNMKCAFC 168


>UniRef50_A1VVD0 Putative uncharacterized protein n=1 Tax=Polaromonas
           naphthalenivorans CJ2 RepID=A1VVD0_POLNA
          Length = 180

 Score =  120 bits (300), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 29/170 (17%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHAS 74
           A+ +  + AR  ++     L++     ++K+      P G  P + DW++ T ++    +
Sbjct: 14  AVYMARMLARNPIIVHALGLTKREGETIWKKTNNRSSPSGQFPSNHDWYLETTDRRFQGA 73

Query: 75  MFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPL----------------LALT 118
           +F   +Q            A+   Y  +        +GP                 L  +
Sbjct: 74  LFILMYQKA--LTAMPRELALPHTYYHFSNITAGEWKGPKGQDVDGAFRNIESDYALPYS 131

Query: 119 RAWTLVRFVESGL--------LQLSSCNCCGGNFITHAHQPVGSFACSLC 160
           RA+ L+    +          L +  C  C G ++    +  G   C LC
Sbjct: 132 RAFNLIAGYHNEQNPQSRHTHLVVKCCKGCLGKYLARFDE--GGSKCPLC 179


>UniRef50_Q5NV35 Putative uncharacterized protein n=3 Tax=Cupriavidus
           RepID=Q5NV35_RALME
          Length = 392

 Score =  115 bits (288), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 22  LGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM-TWEQNVHASMFCNAW 80
            G R + + S    S       Y+ + G   P G  P S  WF+ T  + V ++     +
Sbjct: 237 FGCRAKSVSSLFNTSLEVARDAYRRIHGRSSPSGQPPSSLTWFIETPPRRVQSTFQMWLF 296

Query: 81  QFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVE-SGLLQLSSCNC 139
           +  +     +  ++ + A  +         +   +   R+  L R +  S  L +  C  
Sbjct: 297 RSAIARE-VSTPESFVAAIDI---NRTFFADDCKVPPERSMHLARSMAMSEELAVWPCRK 352

Query: 140 CGGNFITHAH----QPVGSFACSLCQ---PPSRAVKRRK 171
           CG  ++        + + SF C  C      +R   RR+
Sbjct: 353 CGTPYLASNSSDKIELLHSFTCPCCNGTLTATRGGNRRR 391


>UniRef50_Q120F9 Putative uncharacterized protein n=1 Tax=Polaromonas sp. JS666
           RepID=Q120F9_POLSJ
          Length = 237

 Score =  115 bits (287), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 18/170 (10%)

Query: 19  LITLGARLQMLESETQLSRG-----RLIKLYKELRG----SPPPKGMLPFSTDWFMTWEQ 69
           LI L  R Q+++  T            I    E  G     P   G    +  +      
Sbjct: 39  LIRLTQRTQLIKDLTGTDIRPQRIKAAIDKRLEEMGVEIQRPRGSGQTYTAKGFLSKMAD 98

Query: 70  NVHASMFCNAWQFLLKTGLCNGVD-----AVIKAYRLYLEQCP---QAEEGPLLALTRAW 121
              A+            G     D     A+ K    YL  C    + +E   ++     
Sbjct: 99  KYDAAYLLGLHFGANGPGSLATFDTNLGTALDKRMETYLRYCSDMYERQEDASISFETYI 158

Query: 122 TLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRK 171
            L+  +++  + + +C  C  +++      V   +C +C      VK  K
Sbjct: 159 VLIEGIKNHEVPMHTCKDCSTSYVWPVGSYV-RHSCPVCAVHQHDVKAAK 207


>UniRef50_B7XGS9 Putative uncharacterized protein n=2 Tax=Pseudomonas
           RepID=B7XGS9_PSEPU
          Length = 344

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 16  AMELITLGARLQMLESETQLSRGRLIK----LYKELRGSPPPKG--MLPFSTDWFMTWEQ 69
           A EL+    + +++   T L+   +++    L +++       G    P  T      E 
Sbjct: 196 ATELLQQKLQPKLVAQWTGLNADEVVRMKRSLLRDIPLVQSQSGRIQAPNKT----LAES 251

Query: 70  NVHASMFCNAWQFLLKTG-LCNGVDAVIKAYRLYLEQCPQAEEGP--LLALTRAWTLVRF 126
            +H+ ++   ++ L           AV+ A+R Y+E C         +++ +  + L   
Sbjct: 252 PLHSLLYLTIYRLLADNPLRRTNARAVVAAHREYVELCRAVGIEASDMISPSNGYQLSNA 311

Query: 127 VESGLLQLSSCNCCG 141
           +++G + L+ C+ C 
Sbjct: 312 MKTGDITLTPCSKCK 326


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.306    0.130    0.336 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 844,698,099
Number of Sequences: 3077464
Number of extensions: 25840018
Number of successful extensions: 134227
Number of sequences better than 1.0e-01: 28
Number of HSP's better than  0.1 without gapping: 76
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 133969
Number of HSP's gapped (non-prelim): 88
length of query: 192
length of database: 1,040,396,356
effective HSP length: 122
effective length of query: 70
effective length of database: 664,945,748
effective search space: 46546202360
effective search space used: 46546202360
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 89 (38.9 bits)
