Secondary structure and disorder prediction

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Sequence		M	K	A	T	K	L	V	L	G	A	V	I	L	G	S	T	L	L	A	G	C	S	S	N	A	K	I	D	Q	L	S	S	D	V	Q	T	L	N	A	K	V	D	Q	L	S	N	D	V	N	A	M	R	S	D	V	Q	A	A	K	D
Secondary structure
SS confidence
Disorder		?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Sequence		D	A	A	R	A	N	Q	R	L	D	N	M	A	T	K	Y	R	K
Secondary structure
SS confidence
Disorder																	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jcc chain C Region: 22 - 74 Aligned: 53 Modelled: 52 Confidence: 99.8% Identity: 87% PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations Phyre2 PDB 1t8z chain A Region: 25 - 74 Aligned: 50 Modelled: 50 Confidence: 99.6% Identity: 72% PDB header:membrane protein Chain: A: PDB Molecule:major outer membrane lipoprotein; PDBTitle: atomic structure of a novel tryptophan-zipper pentamer Phyre2 PDB 2gr7 chain C Region: 30 - 57 Aligned: 28 Modelled: 28 Confidence: 78.2% Identity: 25% PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 Phyre2 PDB 2gr7 chain A domain 1 Region: 30 - 57 Aligned: 28 Modelled: 28 Confidence: 78.2% Identity: 25% Fold: Pili subunits Superfamily: Pili subunits Family: YadA C-terminal domain-like Phyre2 PDB 2poh chain A Region: 24 - 76 Aligned: 53 Modelled: 53 Confidence: 67.8% Identity: 15% PDB header:viral protein Chain: A: PDB Molecule:head completion protein; PDBTitle: structure of phage p22 tail needle gp26 Phyre2 PDB 1avy chain A Region: 40 - 60 Aligned: 21 Modelled: 21 Confidence: 53.9% Identity: 29% PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4) Phyre2 PDB 1gk6 chain B Region: 34 - 78 Aligned: 45 Modelled: 45 Confidence: 53.9% Identity: 24% PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) Phyre2 PDB 2ykq chain C Region: 24 - 69 Aligned: 46 Modelled: 46 Confidence: 53.3% Identity: 13% PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer Phyre2 PDB 1fos chain F Region: 25 - 61 Aligned: 37 Modelled: 37 Confidence: 51.0% Identity: 30% PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes Phyre2 PDB 1x8y chain A Region: 28 - 78 Aligned: 51 Modelled: 51 Confidence: 49.3% Identity: 22% PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b Phyre2 PDB 1coi chain A Region: 24 - 44 Aligned: 21 Modelled: 21 Confidence: 46.8% Identity: 43% PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald Phyre2 PDB 2xzr chain A Region: 23 - 57 Aligned: 35 Modelled: 35 Confidence: 44.0% Identity: 9% PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors Phyre2 PDB 1gk4 chain A Region: 28 - 78 Aligned: 51 Modelled: 51 Confidence: 40.5% Identity: 16% PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) Phyre2 PDB 3mov chain B Region: 28 - 78 Aligned: 51 Modelled: 51 Confidence: 40.4% Identity: 18% PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment Phyre2 PDB 1ij2 chain C Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.5% Identity: 30% PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position Phyre2 PDB 1rb6 chain C Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form Phyre2 PDB 3k7z chain A Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 1swi chain A Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene Phyre2 PDB 1rb1 chain B Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 PDB 3k7z chain B Region: 27 - 53 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution Phyre2 1 c1jccC_ 2 c1t8zA_ 3 c2gr7C_ 4 d2gr7a1 5 c2pohA_ 6 c1avyA_ 7 c1gk6B_ 8 c2ykqC_ 9 c1fosF_ 10 c1x8yA_ 11 c1coiA_ 12 c2xzrA_ 13 c1gk4A_ 14 c3movB_ 15 c1ij2C_ 16 c1rb6C_ 17 c3k7zA_ 18 c1swiA_ 19 c1rb1B_ 20 c3k7zB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1jccC_ 99.8 87 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 2 c1t8zA_ 99.6 72 PDB header:membrane protein Chain: A: PDB Molecule:major outer membrane lipoprotein; PDBTitle: atomic structure of a novel tryptophan-zipper pentamer 3 c2gr7C_ 78.2 25 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 4 d2gr7a1 78.2 25 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 5 c2pohA_ 67.8 15 PDB header:viral protein Chain: A: PDB Molecule:head completion protein; PDBTitle: structure of phage p22 tail needle gp26 6 c1avyA_ 53.9 29 PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4) 7 c1gk6B_ 53.9 24 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 8 c2ykqC_ 53.3 13 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 9 c1fosF_ 51.0 30 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 10 c1x8yA_ 49.3 22 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 11 c1coiA_ 46.8 43 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 12 c2xzrA_ 44.0 9 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 13 c1gk4A_ 40.5 16 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 14 c3movB_ 40.4 18 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 15 c1ij2C_ 39.5 30 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 16 c1rb6C_ 39.2 30 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 17 c3k7zA_ 39.2 30 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 18 c1swiA_ 39.2 30 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 19 c1rb1B_ 39.2 30 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 20 c3k7zB_ 39.2 30 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 21 c1rb1A_ not modelled 39.2 30 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 22 d1k4ta1 not modelled 38.7 31 Fold:Long alpha-hairpin Superfamily:Eukaryotic DNA topoisomerase I, dispensable insert domain Family:Eukaryotic DNA topoisomerase I, dispensable insert domain 23 c1ij3C_ not modelled 37.9 30 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 24 c1ij3B_ not modelled 37.9 30 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 25 c1ij2B_ not modelled 37.5 30 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 26 c2o7hF_ not modelled 34.4 30 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 27 c1ce0B_ not modelled 33.7 17 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 28 c3m9bK_ not modelled 32.1 24 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 29 c3u59C_ not modelled 31.7 11 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 30 c3na7A_ not modelled 29.7 24 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 31 c2qihA_ not modelled 28.1 18 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 32 c1junB_ not modelled 27.7 28 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 33 c2efrB_ not modelled 27.6 23 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 34 c1ztaA_ not modelled 26.8 30 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 35 c2wpqA_ not modelled 25.9 13 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 36 c1ci6B_ not modelled 25.0 31 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 37 c2diuA_ not modelled 23.2 46 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rrm domain of kiaa0430 protein 38 c1gd2G_ not modelled 23.0 16 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 39 c3okqA_ not modelled 22.9 32 PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6 40 c1deqD_ not modelled 22.6 18 PDB header: PDB COMPND: 41 c1ei3E_ not modelled 22.4 4 PDB header: PDB COMPND: 42 c2ki0A_ not modelled 22.0 33 PDB header:de novo protein Chain: A: PDB Molecule:ds119; PDBTitle: nmr structure of a de novo designed beta alpha beta 43 c3bvhE_ not modelled 20.5 25 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 44 c2hpcF_ not modelled 20.2 20 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 45 c3emoA_ not modelled 19.7 19 PDB header:membrane protein/cell adhesion Chain: A: PDB Molecule:hia (adhesin); PDBTitle: crystal structure of transmembrane hia 973-1098 46 c3sjbC_ not modelled 19.5 24 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 47 c2gl2B_ not modelled 19.4 26 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 48 c2x7aB_ not modelled 18.4 24 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 49 c1deqO_ not modelled 18.0 6 PDB header: PDB COMPND: 50 c2wt7B_ not modelled 18.0 22 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 51 c2js5B_ not modelled 18.0 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 52 c3bvhC_ not modelled 18.0 19 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 53 c2w83C_ not modelled 17.2 22 PDB header:protein transport Chain: C: PDB Molecule:c-jun-amino-terminal kinase-interacting protein PDBTitle: crystal structure of the arf6 gtpase in complex with a2 specific effector, jip4 54 c2fxmB_ not modelled 16.0 23 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 55 c2d3eD_ not modelled 15.8 15 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 56 c2e43A_ not modelled 15.5 14 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 57 c3swfA_ not modelled 15.5 15 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 58 c2npsD_ not modelled 15.3 15 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 59 c1j1dF_ not modelled 15.0 14 PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form 60 c3hnwB_ not modelled 14.8 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 61 c2xdjF_ not modelled 14.1 10 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 62 c2xv5A_ not modelled 13.9 21 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 63 c3ghgD_ not modelled 13.9 22 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 64 c1z56B_ not modelled 13.7 18 PDB header:ligase Chain: B: PDB Molecule:ligase interacting factor 1; PDBTitle: co-crystal structure of lif1p-lig4p 65 c3ipdB_ not modelled 13.6 16 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 66 c1ci6A_ not modelled 13.5 22 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 67 c1fosE_ not modelled 13.4 11 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 68 c2zdiC_ not modelled 13.2 12 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 69 c3sjaG_ not modelled 13.0 27 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 70 c1j1eC_ not modelled 12.6 16 PDB header:contractile protein Chain: C: PDB Molecule:troponin i; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form 71 c1n73A_ not modelled 12.5 8 PDB header:blood clotting Chain: A: PDB Molecule:fibrin alpha-1 chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 72 c1bb1B_ not modelled 12.2 23 PDB header:de novo protein design Chain: B: PDB Molecule:designed, thermostable heterotrimeric coiled PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil 73 c3eukC_ not modelled 12.2 26 PDB header:cell cycle Chain: C: PDB Molecule:chromosome partition protein mukb, linker; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer 74 c2wukD_ not modelled 11.5 14 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 75 c2j7aC_ not modelled 11.2 56 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 76 c1j1eB_ not modelled 11.0 16 PDB header:contractile protein Chain: B: PDB Molecule:troponin t; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form 77 c3ntnB_ not modelled 10.9 21 PDB header:membrane protein Chain: B: PDB Molecule:uspa1; PDBTitle: crystal structure of uspa1 head and neck domain from moraxella2 catarrhalis 78 c1qoyA_ not modelled 10.8 23 PDB header:toxin Chain: A: PDB Molecule:hemolysin e; PDBTitle: e.coli hemolysin e (hlye, clya, shea) 79 d1vb8a_ not modelled 10.8 50 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Cycloviolacin 80 c1vb8A_ not modelled 10.8 50 PDB header:plant protein Chain: A: PDB Molecule:viola hederacea root peptide 1; PDBTitle: solution structure of vhr1, the first cyclotide from root2 tissue 81 c2dw3A_ not modelled 10.7 50 PDB header:photosynthesis Chain: A: PDB Molecule:intrinsic membrane protein pufx; PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein 82 c3swyB_ not modelled 10.7 22 PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain 83 c1t2kD_ not modelled 10.6 22 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 84 c1by0A_ not modelled 10.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 85 c2akfC_ not modelled 10.3 35 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 86 c2akfA_ not modelled 10.3 35 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 87 c2akfB_ not modelled 10.3 35 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 88 c3ghgK_ not modelled 10.3 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 89 c3n27A_ not modelled 10.2 38 PDB header:viral protein Chain: A: PDB Molecule:fusion glycoprotein f0, linker, fusion glycoprotein f0; PDBTitle: molecular basis of the inhibition of henipa viruses 90 c3hizB_ not modelled 9.7 13 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 91 c1nbjA_ not modelled 9.6 42 PDB header:plant protein Chain: A: PDB Molecule:cycloviolacin o1; PDBTitle: high-resolution solution structure of cycloviolacin o1 92 d1nbja_ not modelled 9.6 42 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Cyclotides Family:Cycloviolacin 93 c3iynR_ not modelled 9.6 22 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 94 c2hpcH_ not modelled 9.6 25 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 95 c3u1aC_ not modelled 9.3 13 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 96 c1sfcD_ not modelled 9.2 15 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 97 c1n7sB_ not modelled 8.9 20 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 98 c3dbzB_ not modelled 8.7 28 PDB header:sugar binding protein Chain: B: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: human surfactant protein d 99 c1m7lA_ not modelled 8.5 26 PDB header:sugar binding protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0