Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	R	C	G	W	V	S	Q	D	P	L	Y	I	A	Y	H	D	N	E	W	G	V	P	E	T	D	S	K	K	L	F	E	M	I	C	L	E	G	Q	Q	A	G	L	S	W	I	T	V	L	K	K	R	E	N	Y	R	A	C	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	Q	F	D	P	V	K	V	A	A	M	Q	E	E	D	V	E	R	L	V	Q	D	A	G	I	I	R	H	R	G	K	I	Q	A	I	I	G	N	A	R	A	Y	L	Q	M	E	Q	N	G	E	P	F	V	D	F	V	W	S	F	V
Secondary structure
SS confidence
Disorder																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	H	Q	P	Q	V	T	Q	A	T	T	L	S	E	I	P	T	S	T	S	A	S	D	A	L	S	K	A	L	K	K	R	G	F	K	F	V	G	T	T	I	C	Y	S	F	M	Q	A	C	G	L	V	N	D	H	V	V	G	C	C
Secondary structure
SS confidence
Disorder																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		C	Y	P	G	N	K	P
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nku chain A Region: 1 - 187 Aligned: 187 Modelled: 187 Confidence: 100.0% Identity: 98% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: 3-Methyladenine DNA glycosylase I (Tag) Phyre2 PDB 2jg6 chain A Region: 1 - 185 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 43% PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus Phyre2 PDB 1kea chain A Region: 10 - 167 Aligned: 120 Modelled: 136 Confidence: 97.3% Identity: 12% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 1orn chain A Region: 10 - 167 Aligned: 117 Modelled: 125 Confidence: 96.5% Identity: 18% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Endonuclease III Phyre2 PDB 3n5n chain X Region: 28 - 176 Aligned: 116 Modelled: 127 Confidence: 96.3% Identity: 19% PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue Phyre2 PDB 1rrq chain A domain 1 Region: 12 - 166 Aligned: 116 Modelled: 118 Confidence: 96.2% Identity: 15% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 1kg2 chain A Region: 13 - 167 Aligned: 116 Modelled: 124 Confidence: 96.0% Identity: 18% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 1pu6 chain A Region: 32 - 176 Aligned: 118 Modelled: 123 Confidence: 96.0% Identity: 19% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: 3-Methyladenine DNA glycosylase III (MagIII) Phyre2 PDB 3fhg chain A Region: 13 - 174 Aligned: 128 Modelled: 137 Confidence: 94.8% Identity: 13% PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) Phyre2 PDB 2abk chain A Region: 21 - 176 Aligned: 123 Modelled: 130 Confidence: 94.1% Identity: 18% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Endonuclease III Phyre2 PDB 2yg8 chain B Region: 4 - 104 Aligned: 95 Modelled: 101 Confidence: 91.6% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans Phyre2 PDB 3n0u chain B Region: 27 - 176 Aligned: 110 Modelled: 118 Confidence: 91.2% Identity: 16% PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima Phyre2 PDB 3knt chain C Region: 22 - 170 Aligned: 110 Modelled: 124 Confidence: 91.2% Identity: 13% PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine Phyre2 PDB 1rrq chain A Region: 12 - 176 Aligned: 131 Modelled: 150 Confidence: 89.8% Identity: 15% PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair Phyre2 PDB 1ngn chain A Region: 32 - 104 Aligned: 69 Modelled: 73 Confidence: 89.1% Identity: 14% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 3s6i chain A Region: 22 - 167 Aligned: 114 Modelled: 117 Confidence: 81.5% Identity: 15% PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. Phyre2 PDB 1mpg chain A domain 1 Region: 31 - 104 Aligned: 68 Modelled: 74 Confidence: 75.7% Identity: 24% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: DNA repair glycosylase, 2 C-terminal domains Phyre2 PDB 1oxj chain A Region: 45 - 97 Aligned: 49 Modelled: 53 Confidence: 68.7% Identity: 16% PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein smaug; PDBTitle: crystal structure of the smaug rna binding domain Phyre2 PDB 1oxj chain A domain 1 Region: 56 - 100 Aligned: 42 Modelled: 45 Confidence: 62.4% Identity: 14% Fold: SAM domain-like Superfamily: SAM/Pointed domain Family: SAM (sterile alpha motif) domain Phyre2 PDB 3hjz chain A Region: 92 - 169 Aligned: 61 Modelled: 63 Confidence: 61.2% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:transaldolase b; PDBTitle: the structure of an aldolase from prochlorococcus marinus Phyre2 1 d1nkua_ 2 c2jg6A_ 3 d1keaa_ 4 d1orna_ 5 c3n5nX_ 6 d1rrqa1 7 d1kg2a_ 8 d1pu6a_ 9 c3fhgA_ 10 d2abka_ 11 c2yg8B_ 12 c3n0uB_ 13 c3kntC_ 14 c1rrqA_ 15 d1ngna_ 16 c3s6iA_ 17 d1mpga1 18 c1oxjA_ 19 d1oxja1 20 c3hjzA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nkua_ 100.0 98 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 2 c2jg6A_ 100.0 43 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 3 d1keaa_ 97.3 12 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 4 d1orna_ 96.5 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 5 c3n5nX_ 96.3 19 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 6 d1rrqa1 96.2 15 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 7 d1kg2a_ 96.0 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 8 d1pu6a_ 96.0 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 9 c3fhgA_ 94.8 13 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 10 d2abka_ 94.1 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 11 c2yg8B_ 91.6 15 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 12 c3n0uB_ 91.2 16 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 13 c3kntC_ 91.2 13 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 14 c1rrqA_ 89.8 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 15 d1ngna_ 89.1 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 16 c3s6iA_ 81.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 17 d1mpga1 75.7 24 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 18 c1oxjA_ 68.7 16 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein smaug; PDBTitle: crystal structure of the smaug rna binding domain 19 d1oxja1 62.4 14 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 20 c3hjzA_ 61.2 25 PDB header:transferase Chain: A: PDB Molecule:transaldolase b; PDBTitle: the structure of an aldolase from prochlorococcus marinus 21 c2eseA_ not modelled 59.4 18 PDB header:protein/rna complex Chain: A: PDB Molecule:vts1p; PDBTitle: structure of the sam domain of vts1p in complex with rna 22 c2vtgA_ not modelled 55.2 13 PDB header:metal-binding protein Chain: A: PDB Molecule:ionized calcium-binding adapter molecule 2; PDBTitle: crystal structure of human iba2, trigonal crystal form 23 c2fe9A_ not modelled 55.2 18 PDB header:rna binding protein Chain: A: PDB Molecule:protein vts1; PDBTitle: solution structure of the vts1 sam domain in the presence2 of rna 24 c2b6gA_ not modelled 54.7 18 PDB header:rna binding protein Chain: A: PDB Molecule:vts1p; PDBTitle: rna recognition by the vts1 sam domain 25 d2noha1 not modelled 51.2 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 26 c2g2bA_ not modelled 50.0 15 PDB header:immune system Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: nmr structure of the human allograft inflammatory factor 1 27 c2hjwA_ not modelled 49.1 23 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: crystal structure of the bc domain of acc2 28 d1a9xa2 not modelled 47.6 25 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 29 c3k1rB_ not modelled 46.7 19 PDB header:structural protein Chain: B: PDB Molecule:usher syndrome type-1g protein; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 30 c2d58A_ not modelled 46.1 16 PDB header:metal binding protein Chain: A: PDB Molecule:allograft inflammatory factor 1; PDBTitle: human microglia-specific protein iba1 31 c2e8nA_ not modelled 45.6 25 PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1) 32 d1wg8a1 not modelled 43.9 26 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 33 c3m16A_ not modelled 42.4 26 PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: structure of a transaldolase from oleispira antarctica 34 d1coka_ not modelled 41.7 14 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 35 d1onra_ not modelled 41.7 23 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 36 c2yvqA_ not modelled 41.4 19 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 37 c3igxA_ not modelled 40.9 20 PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: 1.85 angstrom resolution crystal structure of transaldolase b (tala)2 from francisella tularensis. 38 c2jhnB_ not modelled 35.8 22 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 39 c2h56C_ not modelled 31.3 15 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 40 d1zkda1 not modelled 31.2 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:RPA4359-like 41 d1kjna_ not modelled 30.3 36 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 42 c2hnhA_ not modelled 30.2 14 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 43 d1f05a_ not modelled 30.1 23 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 44 c2fe3B_ not modelled 30.1 27 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 45 c2dl0A_ not modelled 29.2 14 PDB header:signaling protein Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1 46 d1zcza1 not modelled 29.2 14 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 47 c2uv1B_ not modelled 28.9 45 PDB header:inhibitor Chain: B: PDB Molecule:host-nuclease inhibitor protein gam; PDBTitle: hexagonal crystal form of gams from bacteriophage lambda. 48 c2lc0A_ not modelled 28.2 13 PDB header:protein binding Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: rv0020c_nter structure 49 d1wlza1 not modelled 27.9 14 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 50 d1b0xa_ not modelled 26.2 27 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 51 c1b0xA_ not modelled 26.2 27 PDB header:transferase Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase); PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization. 52 c2remB_ not modelled 25.7 9 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 53 d1vpxa_ not modelled 24.7 33 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 54 d1v38a_ not modelled 24.7 10 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 55 d2j9ga2 not modelled 24.6 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 56 c1wlzD_ not modelled 24.5 14 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 57 c3cq0B_ not modelled 24.4 25 PDB header:transferase Chain: B: PDB Molecule:putative transaldolase ygr043c; PDBTitle: crystal structure of tal2_yeast 58 c2l98A_ not modelled 23.3 15 PDB header:contractile protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: structure of trans-resveratrol in complex with the cardiac regulatory2 protein troponin c 59 c3f10A_ not modelled 23.2 18 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 60 d1g8ma1 not modelled 22.2 14 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 61 c1scvA_ not modelled 21.6 16 PDB header:contractile protein, structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i 62 c3l78A_ not modelled 21.2 11 PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 63 d1ulza2 not modelled 20.8 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 64 d2e1da1 not modelled 20.2 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 65 c3s1vD_ not modelled 20.1 24 PDB header:transferase Chain: D: PDB Molecule:probable transaldolase; PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate 66 d1pkxa1 not modelled 19.0 17 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 67 c2b1uA_ not modelled 18.5 18 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 68 c2ktgA_ not modelled 17.9 18 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 69 c2eaoA_ not modelled 17.7 32 PDB header:signaling protein, transferase Chain: A: PDB Molecule:ephrin type-b receptor 1; PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112) 70 c2jziB_ not modelled 17.5 36 PDB header:metal binding protein Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin 71 c2kdhA_ not modelled 17.1 15 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate 72 c1mpgB_ not modelled 16.7 22 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 73 c3senD_ not modelled 16.5 28 PDB header:signaling protein Chain: D: PDB Molecule:caskin-1; PDBTitle: structure of caskin1 tandem sams 74 c2ebuA_ not modelled 16.3 24 PDB header:replication Chain: A: PDB Molecule:replication factor c subunit 1; PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1 75 d1wx0a1 not modelled 16.3 36 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 76 c2l05A_ not modelled 16.2 64 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf; PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f 77 c2o03A_ not modelled 16.1 31 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 78 c1cjyB_ not modelled 16.0 10 PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 79 d2opoa1 not modelled 15.4 9 Fold:EF Hand-like Superfamily:EF-hand Family:Polcalcin 80 c2o7pA_ not modelled 14.9 31 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 81 c3gidB_ not modelled 14.8 24 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: the biotin carboxylase (bc) domain of human acetyl-coa2 carboxylase 2 (acc2) in complex with soraphen a 82 c3mwmA_ not modelled 14.7 30 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 83 d1qjta_ not modelled 14.4 15 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 84 c1yqmA_ not modelled 14.2 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 85 c1rrbA_ not modelled 14.2 37 PDB header:transferase Chain: A: PDB Molecule:raf proto-oncogene serine/threonine-protein PDBTitle: the ras-binding domain of raf-1 from rat, nmr, 1 structure 86 c1qzuB_ not modelled 14.0 10 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein mds018; PDBTitle: crystal structure of human phosphopantothenoylcysteine decarboxylase 87 d1cjya2 not modelled 13.9 10 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 88 d1f54a_ not modelled 13.9 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 89 d1fi5a_ not modelled 13.8 17 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 90 c1fi5A_ not modelled 13.8 17 PDB header:contractile protein Chain: A: PDB Molecule:protein (troponin c); PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i. 91 c1ykuB_ not modelled 13.6 9 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 92 c3kp9A_ not modelled 13.6 20 PDB header:blood coagulation,oxidoreductase Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase 93 d1jc2a_ not modelled 13.5 17 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 94 c1jc2A_ not modelled 13.5 17 PDB header:structural protein Chain: A: PDB Molecule:troponin c, skeletal muscle; PDBTitle: complex of the c-domain of troponin c with residues 1-40 of2 troponin i 95 d1wrka1 not modelled 12.9 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 96 c3gkxB_ not modelled 12.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 97 d1ap4a_ not modelled 12.9 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 98 d1qzua_ not modelled 12.9 10 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 99 d1l7ba_ not modelled 12.9 24 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0